Wall clock time and date at job start Tue Mar 31 2020 14:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 108.82969 * 2 1 4 4 N 1.46906 * 109.47093 * 63.56463 * 3 2 1 5 5 C 1.54177 * 108.85253 * 118.50074 * 2 1 3 6 6 C 1.53822 * 111.96834 * 79.19264 * 5 2 1 7 7 C 1.50822 * 111.62064 * 319.04167 * 6 5 2 8 8 N 1.47632 * 108.03776 * 95.06241 * 7 6 5 9 9 C 1.38414 * 110.99860 * 150.32452 * 8 7 6 10 10 N 1.32746 * 119.43542 * 63.67139 * 9 8 7 11 11 C 1.31465 * 121.74455 * 179.97438 * 10 9 8 12 12 C 1.40793 * 120.38307 * 359.97438 * 11 10 9 13 13 C 1.41197 * 120.56372 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99918 * 329.53906 * 13 12 11 15 15 C 1.39866 * 120.00329 * 149.54393 * 13 12 11 16 16 N 1.30903 * 119.99756 * 347.69024 * 15 13 12 17 17 Si 1.86797 * 120.00280 * 167.69638 * 15 13 12 18 18 H 1.48502 * 109.47256 * 89.99640 * 17 15 13 19 19 H 1.48501 * 109.47248 * 209.99868 * 17 15 13 20 20 H 1.48504 * 109.47041 * 329.99292 * 17 15 13 21 21 C 1.41278 * 118.87367 * 0.02562 * 12 11 10 22 22 C 1.36670 * 118.40088 * 359.74419 * 21 12 11 23 23 Cl 1.73598 * 120.26556 * 180.26049 * 22 21 12 24 24 C 1.39777 * 114.76881 * 277.17777 * 8 7 6 25 25 C 1.50803 * 108.81015 * 241.47841 * 2 1 3 26 26 H 1.08998 * 109.47723 * 281.75021 * 1 2 3 27 27 H 1.08997 * 109.47426 * 41.75205 * 1 2 3 28 28 H 1.09006 * 109.46943 * 161.75404 * 1 2 3 29 29 H 1.08996 * 109.47410 * 183.56460 * 3 2 1 30 30 H 1.09009 * 109.46935 * 303.56936 * 3 2 1 31 31 H 1.00901 * 110.99574 * 174.20439 * 4 3 2 32 32 H 1.00895 * 110.99741 * 298.15507 * 4 3 2 33 33 H 1.09001 * 108.98368 * 318.55244 * 5 2 1 34 34 H 1.09003 * 108.91661 * 199.78673 * 5 2 1 35 35 H 1.08999 * 109.05083 * 198.49069 * 6 5 2 36 36 H 1.09000 * 109.05032 * 79.59363 * 6 5 2 37 37 H 1.08995 * 109.74813 * 335.43203 * 7 6 5 38 38 H 1.08997 * 109.74877 * 214.69423 * 7 6 5 39 39 H 1.07996 * 119.81318 * 180.02562 * 11 10 9 40 40 H 0.96995 * 120.00040 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.80039 * 179.97438 * 21 12 11 42 42 H 1.08996 * 109.02499 * 182.86867 * 24 8 7 43 43 H 1.09001 * 109.02352 * 301.77271 * 24 8 7 44 44 H 1.09001 * 109.61820 * 212.47696 * 25 2 1 45 45 H 1.09000 * 109.49813 * 92.19686 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0238 1.4481 0.0000 4 7 1.5982 2.1105 1.2402 5 6 2.0282 -0.6962 1.2822 6 6 1.9610 -2.2287 1.1681 7 6 0.6947 -2.6801 0.4843 8 7 0.9924 -2.8711 -0.9490 9 6 0.1834 -3.8512 -1.4973 10 7 -1.1298 -3.6631 -1.5429 11 6 -1.9403 -4.5633 -2.0539 12 6 -1.4294 -5.7677 -2.5743 13 6 -2.2963 -6.7369 -3.1245 14 1 -3.3038 -6.8363 -2.7481 15 6 -1.8504 -7.5684 -4.1570 16 7 -0.7295 -7.2986 -4.7768 17 14 -2.8546 -9.0638 -4.6517 18 1 -3.8217 -8.6820 -5.7120 19 1 -1.9476 -10.1210 -5.1664 20 1 -3.5929 -9.5773 -3.4699 21 6 -0.0348 -5.9899 -2.5366 22 6 0.7638 -5.0199 -1.9989 23 17 2.4846 -5.2396 -1.9343 24 6 0.9538 -1.7031 -1.7159 25 6 2.0162 -0.6816 -1.2542 26 1 -0.3634 0.2093 1.0061 27 1 -0.3634 0.7666 -0.6843 28 1 -0.3633 -0.9761 -0.3218 29 1 3.1118 1.4610 -0.0639 30 1 1.6032 1.9754 -0.8563 31 1 1.9909 3.0375 1.3081 32 1 0.5919 2.1383 1.3084 33 1 1.4116 -0.3759 2.1221 34 1 3.0606 -0.3994 1.4672 35 1 1.9994 -2.6619 2.1676 36 1 2.8193 -2.5809 0.5960 37 1 -0.0781 -1.9206 0.6018 38 1 0.3568 -3.6209 0.9187 39 1 -3.0039 -4.3776 -2.0755 40 1 -0.4204 -7.8750 -5.4931 41 1 0.3905 -6.9029 -2.9267 42 1 1.1356 -1.9574 -2.7600 43 1 -0.0346 -1.2522 -1.6271 44 1 2.9541 -1.1981 -1.0500 45 1 2.1708 0.0621 -2.0359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164250534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:59 Heat of formation + Delta-G solvation = 49.187097 kcal Electronic energy + Delta-G solvation = -26153.084598 eV Core-core repulsion = 22617.699082 eV Total energy + Delta-G solvation = -3535.385516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53837 -38.47479 -35.99974 -35.36026 -34.05303 -32.70188 -31.91282 -30.59347 -29.51231 -27.92203 -26.60401 -25.41916 -24.54320 -22.38872 -21.99372 -21.21326 -19.69379 -18.01668 -17.57154 -16.78899 -16.28247 -15.75618 -15.24595 -15.02255 -14.84034 -14.35994 -14.30147 -14.23994 -13.65625 -13.11472 -12.94924 -12.74377 -12.32952 -12.26242 -12.06259 -11.84936 -11.61163 -11.53743 -11.35433 -11.09499 -11.04182 -10.90632 -10.71144 -10.59699 -10.38436 -10.33507 -10.23431 -9.98001 -9.82593 -9.74060 -9.47737 -8.75995 -8.46201 -8.18254 -7.52367 -7.45196 -6.96817 -4.65324 2.35385 2.71605 2.96517 2.98370 3.02902 3.34772 3.76473 4.39875 4.48498 4.53722 4.83239 4.92683 5.09227 5.32676 5.43192 5.51415 5.59299 5.62883 5.64643 5.72735 5.77607 5.90082 5.94846 6.05275 6.15694 6.23592 6.27684 6.33634 6.38577 6.46379 6.51385 6.54316 6.57710 6.67577 6.78193 6.83851 6.87620 6.95832 7.04439 7.06706 7.31034 7.56092 7.69919 7.99670 8.10687 8.34011 8.51230 8.58805 9.32231 9.95179 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003379 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.507175 B = 8283.298485 C = 8791.019844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.054 4.054 3 C 0.071 3.929 4 N -0.848 5.848 5 C -0.086 4.086 6 C -0.119 4.119 7 C 0.056 3.944 8 N -0.473 5.473 9 C 0.153 3.847 10 N -0.475 5.475 11 C -0.008 4.008 12 C 0.076 3.924 13 C -0.445 4.445 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.787 5.787 17 Si 0.916 3.084 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.127 4.127 22 C -0.012 4.012 23 Cl -0.098 7.098 24 C 0.070 3.930 25 C -0.107 4.107 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.335 0.665 32 H 0.339 0.661 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.131 0.869 40 H 0.286 0.714 41 H 0.134 0.866 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.843 10.070 6.039 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.055 4.055 3 C -0.060 4.060 4 N -0.377 5.377 5 C -0.124 4.124 6 C -0.157 4.157 7 C -0.070 4.070 8 N -0.195 5.195 9 C -0.076 4.076 10 N -0.185 5.185 11 C -0.172 4.172 12 C 0.071 3.929 13 C -0.475 4.475 14 H 0.105 0.895 15 C -0.147 4.147 16 N -0.412 5.412 17 Si 0.740 3.260 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.153 4.153 22 C -0.043 4.043 23 Cl -0.069 7.069 24 C -0.059 4.059 25 C -0.146 4.146 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.097 0.903 41 H 0.152 0.848 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.680 10.033 6.531 12.853 hybrid contribution -1.079 -0.469 -1.429 1.851 sum 3.601 9.564 5.102 11.422 Atomic orbital electron populations 1.22905 0.95466 1.04124 1.00956 1.20361 0.95616 0.93631 0.95842 1.22016 0.99865 0.94337 0.89744 1.58718 1.15214 1.24669 1.39106 1.21780 1.00565 0.94024 0.96000 1.21468 0.99427 0.95198 0.99657 1.22132 0.96901 1.00879 0.87105 1.56463 1.52460 1.08821 1.01794 1.18450 0.86850 0.93461 1.08796 1.67173 1.04010 1.32715 1.14637 1.22438 0.97750 0.90877 1.06101 1.18459 0.91916 0.92257 0.90248 1.19507 0.99725 1.13512 1.14758 0.89529 1.25993 0.95166 0.98338 0.95210 1.69785 1.19353 1.34918 1.17095 0.86173 0.80019 0.80133 0.79714 1.19253 1.19900 1.18261 1.21305 0.93454 0.98896 1.01667 1.21206 0.83242 0.96486 1.03349 1.98257 1.14203 1.97077 1.97393 1.21089 0.97862 0.90035 0.96913 1.21522 0.99838 0.97380 0.95831 0.93061 0.93863 0.87817 0.91418 0.95889 0.85354 0.84812 0.92108 0.92809 0.92730 0.90897 0.91507 0.92066 0.85109 0.90267 0.84826 0.92198 0.93552 0.90776 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 5.72 37.16 0.21 -2.08 16 2 C -0.05 -0.66 0.56 -155.00 -0.09 -0.74 16 3 C 0.07 0.74 5.27 -3.82 -0.02 0.72 16 4 N -0.85 -7.83 8.89 -10.37 -0.09 -7.93 16 5 C -0.09 -1.08 4.39 -25.69 -0.11 -1.19 16 6 C -0.12 -1.70 5.41 -27.40 -0.15 -1.84 16 7 C 0.06 0.93 5.08 -4.51 -0.02 0.91 16 8 N -0.47 -8.73 3.27 -178.17 -0.58 -9.32 16 9 C 0.15 3.35 4.90 -155.05 -0.76 2.58 16 10 N -0.47 -10.78 9.85 -11.75 -0.12 -10.89 16 11 C -0.01 -0.19 10.97 -16.74 -0.18 -0.37 16 12 C 0.08 1.88 5.53 -106.65 -0.59 1.30 16 13 C -0.45 -10.80 9.06 -37.85 -0.34 -11.14 16 14 H 0.09 1.98 7.87 -52.48 -0.41 1.57 16 15 C 0.07 1.68 5.23 -17.34 -0.09 1.59 16 16 N -0.79 -19.11 11.08 55.54 0.62 -18.49 16 17 Si 0.92 17.38 29.58 -169.99 -5.03 12.35 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 C -0.13 -3.12 8.47 -38.99 -0.33 -3.45 16 22 C -0.01 -0.29 6.32 -39.57 -0.25 -0.54 16 23 Cl -0.10 -1.99 28.43 -51.86 -1.47 -3.46 16 24 C 0.07 1.19 4.67 -6.74 -0.03 1.16 16 25 C -0.11 -1.47 5.03 -27.08 -0.14 -1.60 16 26 H 0.05 0.62 7.18 -51.93 -0.37 0.25 16 27 H 0.04 0.53 7.92 -51.93 -0.41 0.12 16 28 H 0.10 1.62 2.67 -51.93 -0.14 1.48 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.24 8.02 -51.92 -0.42 -0.18 16 31 H 0.33 2.48 9.08 -39.29 -0.36 2.13 16 32 H 0.34 3.01 7.82 -39.29 -0.31 2.70 16 33 H 0.06 0.77 7.55 -51.93 -0.39 0.38 16 34 H 0.05 0.67 7.98 -51.93 -0.41 0.25 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.12 7.26 -51.93 -0.38 0.75 16 37 H 0.07 1.10 4.00 -51.93 -0.21 0.89 16 38 H 0.06 1.13 7.80 -51.93 -0.40 0.73 16 39 H 0.13 2.82 8.06 -52.49 -0.42 2.40 16 40 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 41 H 0.13 3.41 6.51 -52.49 -0.34 3.07 16 42 H 0.06 1.13 7.97 -51.93 -0.41 0.72 16 43 H 0.05 0.82 4.84 -51.93 -0.25 0.57 16 44 H 0.07 1.06 7.10 -51.93 -0.37 0.70 16 45 H 0.06 0.74 7.71 -51.93 -0.40 0.34 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -24.89 350.95 -10.67 -35.56 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.39 Total: 11.61 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.89 Total: -14.72 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.18 Total: -46.63 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -1.47 Total: -3.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -24.89 -10.67 -35.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164250534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.750 kcal (2) G-P(sol) polarization free energy of solvation -24.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds