Wall clock time and date at job start Tue Mar 31 2020 14:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47034 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.46997 * 29.99928 * 3 2 1 6 6 H 1.48497 * 109.46828 * 149.99832 * 3 2 1 7 7 C 1.38810 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00042 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99837 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99770 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47091 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47350 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00126 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99553 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99978 * 179.97438 * 14 13 12 17 17 H 1.08997 * 110.27608 * 302.08439 * 16 14 13 18 18 C 1.54594 * 110.39252 * 64.23355 * 16 14 13 19 19 C 1.54933 * 102.92252 * 140.91703 * 18 16 14 20 20 N 1.48534 * 103.22824 * 322.58255 * 19 18 16 21 21 C 1.46901 * 111.00172 * 159.71827 * 20 19 18 22 22 C 1.53000 * 109.46769 * 52.60936 * 21 20 19 23 23 F 1.39895 * 109.47411 * 59.99686 * 22 21 20 24 24 F 1.39898 * 109.46890 * 180.02562 * 22 21 20 25 25 F 1.39904 * 109.47059 * 299.99428 * 22 21 20 26 26 C 1.47912 * 105.81750 * 39.20906 * 20 19 18 27 27 H 0.97002 * 120.00341 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00461 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47403 * 60.00074 * 10 9 7 30 30 H 1.08999 * 109.47315 * 300.00099 * 10 9 7 31 31 H 1.08998 * 109.47638 * 59.99885 * 11 10 9 32 32 H 1.09009 * 109.46916 * 299.99954 * 11 10 9 33 33 H 1.08994 * 109.47558 * 59.99475 * 12 11 10 34 34 H 1.09009 * 109.46850 * 299.99683 * 12 11 10 35 35 H 0.96995 * 119.99497 * 359.97438 * 13 12 11 36 36 H 1.09002 * 110.71950 * 259.27335 * 18 16 14 37 37 H 1.09000 * 110.72900 * 22.37975 * 18 16 14 38 38 H 1.08997 * 110.67236 * 204.14971 * 19 18 16 39 39 H 1.09001 * 110.67169 * 81.02116 * 19 18 16 40 40 H 1.09002 * 109.47401 * 292.60643 * 21 20 19 41 41 H 1.09001 * 109.46874 * 172.60656 * 21 20 19 42 42 H 1.08997 * 109.91505 * 94.02357 * 26 20 19 43 43 H 1.08996 * 109.91557 * 215.32097 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 6 6.3815 -3.5161 -0.0017 13 7 7.8218 -3.2483 -0.0011 14 6 8.6977 -4.2727 -0.0020 15 8 8.2934 -5.4162 -0.0029 16 6 10.1792 -3.9973 -0.0020 17 1 10.4512 -3.3936 -0.8678 18 6 10.5939 -3.2806 1.3035 19 6 11.9562 -3.9367 1.6413 20 7 11.7573 -5.3550 1.2477 21 6 13.0457 -6.0291 1.0387 22 6 13.9310 -5.8301 2.2706 23 9 13.2971 -6.3734 3.3932 24 9 15.1582 -6.4715 2.0714 25 9 14.1475 -4.4629 2.4733 26 6 10.9687 -5.3195 -0.0031 27 1 -0.4851 0.8400 -0.0004 28 1 3.8646 -0.3620 -0.0007 29 1 3.8486 -3.0425 -0.8908 30 1 3.8492 -3.0422 0.8891 31 1 5.8798 -1.6195 0.8889 32 1 5.8797 -1.6195 -0.8911 33 1 6.1181 -4.0873 -0.8918 34 1 6.1182 -4.0880 0.8882 35 1 8.1450 -2.3338 -0.0008 36 1 10.7125 -2.2102 1.1349 37 1 9.8665 -3.4669 2.0937 38 1 12.1665 -3.8594 2.7080 39 1 12.7569 -3.4838 1.0566 40 1 13.5396 -5.6058 0.1641 41 1 12.8770 -7.0943 0.8807 42 1 11.6363 -5.3527 -0.8640 43 1 10.2794 -6.1634 -0.0316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164588782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:21 Heat of formation + Delta-G solvation = -170.825641 kcal Electronic energy + Delta-G solvation = -26964.057373 eV Core-core repulsion = 22436.565484 eV Total energy + Delta-G solvation = -4527.491890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.58964 -48.16079 -47.97273 -40.59529 -38.63497 -36.21874 -34.55078 -33.63339 -31.99513 -30.21274 -29.55957 -28.62894 -25.61253 -23.81374 -22.95382 -22.05164 -21.79849 -21.31794 -20.02226 -19.07171 -18.91917 -17.99991 -17.76282 -17.32185 -16.45629 -15.98683 -15.73110 -15.44738 -15.04210 -14.93348 -14.82174 -14.55649 -14.50896 -14.37218 -14.18071 -14.14686 -13.99516 -13.59926 -13.23750 -12.97821 -12.83708 -12.52799 -12.46898 -12.07681 -12.02436 -11.86321 -11.80705 -11.30306 -11.22905 -11.06872 -10.86088 -10.74298 -10.19691 -9.94215 -9.61819 -9.20590 -9.15561 -8.92994 -7.27153 -5.79097 -3.15423 2.18825 2.43792 2.90710 3.04453 3.26812 3.33916 3.36065 3.42380 3.53021 3.80761 3.96495 4.14166 4.38902 4.48057 4.56075 4.66229 4.69925 4.79308 4.87539 4.91849 5.04422 5.16337 5.27713 5.35077 5.45985 5.51233 5.54224 5.61157 5.75988 5.88577 5.92083 6.08582 6.09619 6.12898 6.32341 6.65278 6.68351 7.31969 7.96857 8.03676 8.39580 9.18212 9.90227 10.09588 11.39199 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.001795 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.823841 B =15592.489938 C =15969.816982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.141 4.141 12 C 0.122 3.878 13 N -0.726 5.726 14 C 0.521 3.479 15 O -0.534 6.534 16 C -0.122 4.122 17 H 0.105 0.895 18 C -0.114 4.114 19 C 0.021 3.979 20 N -0.508 5.508 21 C 0.001 3.999 22 C 0.456 3.544 23 F -0.171 7.171 24 F -0.183 7.183 25 F -0.183 7.183 26 C 0.047 3.953 27 H 0.260 0.740 28 H 0.360 0.640 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.056 0.944 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.960 -9.630 1.057 35.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.002 4.002 13 N -0.377 5.377 14 C 0.306 3.694 15 O -0.411 6.411 16 C -0.144 4.144 17 H 0.123 0.877 18 C -0.152 4.152 19 C -0.107 4.107 20 N -0.233 5.233 21 C -0.129 4.129 22 C 0.401 3.599 23 F -0.153 7.153 24 F -0.165 7.165 25 F -0.165 7.165 26 C -0.080 4.080 27 H 0.070 0.930 28 H 0.193 0.807 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.234 0.766 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.074 0.926 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 33.150 -10.848 1.489 34.912 hybrid contribution 1.295 2.212 -0.463 2.605 sum 34.445 -8.636 1.026 35.526 Atomic orbital electron populations 1.69703 1.05097 1.25853 1.57460 1.24697 0.95279 0.97267 1.02016 0.86511 0.79138 0.84912 0.77714 1.21086 1.21688 1.20412 1.19072 0.80572 0.94841 1.43119 0.89134 1.42681 1.04116 1.02131 1.91312 1.20499 0.87633 0.89534 0.99107 1.21992 0.97210 0.96208 1.02550 1.21361 0.78133 0.97902 1.02775 1.46029 1.07160 1.09260 1.75250 1.20238 0.88026 0.85205 0.75950 1.90703 1.79798 1.21287 1.49286 1.22146 0.92957 0.98406 1.00854 0.87668 1.22535 0.97166 0.99561 0.95984 1.23740 0.97045 0.87248 1.02618 1.64971 1.12703 1.15005 1.30572 1.23503 0.91022 1.05050 0.93359 1.20429 0.79410 0.73801 0.86252 1.93232 1.81613 1.85579 1.54841 1.93200 1.46209 1.81916 1.95126 1.93182 1.95112 1.32335 1.95834 1.22954 0.96584 0.98998 0.89451 0.93021 0.80707 0.95159 0.95202 0.91341 0.91378 0.91128 0.91103 0.76598 0.89606 0.89701 0.88637 0.92269 0.89940 0.85786 0.92572 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.82 27.74 -169.99 -4.71 17.11 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -17.75 5.41 -59.91 -0.32 -18.08 16 10 C 0.16 2.97 6.26 -4.04 -0.03 2.94 16 11 C -0.14 -1.90 5.44 -26.73 -0.15 -2.05 16 12 C 0.12 1.48 5.67 -4.04 -0.02 1.45 16 13 N -0.73 -7.03 5.53 -60.29 -0.33 -7.36 16 14 C 0.52 5.52 7.01 -10.99 -0.08 5.44 16 15 O -0.53 -7.86 15.24 5.55 0.08 -7.77 16 16 C -0.12 -0.84 3.38 -90.42 -0.31 -1.15 16 17 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 18 C -0.11 -0.69 6.58 -24.87 -0.16 -0.86 16 19 C 0.02 0.13 4.69 -1.90 -0.01 0.12 16 20 N -0.51 -3.70 5.32 -230.45 -1.23 -4.93 16 21 C 0.00 0.00 5.15 -3.82 -0.02 -0.02 16 22 C 0.46 3.10 3.07 37.16 0.11 3.22 16 23 F -0.17 -1.51 17.24 2.25 0.04 -1.47 16 24 F -0.18 -1.30 17.32 2.25 0.04 -1.26 16 25 F -0.18 -1.31 13.56 2.25 0.03 -1.28 16 26 C 0.05 0.34 6.30 -2.75 -0.02 0.32 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.36 8.12 5.53 -40.82 -0.23 7.89 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.40 2.82 8.47 -40.82 -0.35 2.47 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 38 H 0.10 0.67 6.97 -51.93 -0.36 0.31 16 39 H 0.06 0.31 7.36 -51.93 -0.38 -0.07 16 40 H 0.08 0.28 7.81 -51.93 -0.41 -0.12 16 41 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.29 7.57 -51.93 -0.39 -0.10 16 43 H 0.11 1.11 6.42 -51.93 -0.33 0.78 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -34.43 359.21 -7.39 -41.82 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.25 Total: 4.09 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.93 Total: 2.28 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -1.11 Total: -58.91 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.08 Total: -7.77 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.11 Total: -4.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.43 -7.39 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164588782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.007 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds