Wall clock time and date at job start Tue Mar 31 2020 14:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47034 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.46997 * 29.99928 * 3 2 1 6 6 H 1.48497 * 109.46828 * 149.99832 * 3 2 1 7 7 C 1.38810 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00042 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99837 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99770 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47091 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47350 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00126 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99553 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99978 * 179.97438 * 14 13 12 17 17 H 1.08997 * 110.27608 * 302.08439 * 16 14 13 18 18 C 1.54594 * 110.39252 * 64.23355 * 16 14 13 19 19 C 1.54933 * 102.92252 * 140.91703 * 18 16 14 20 20 N 1.48534 * 103.22824 * 322.58255 * 19 18 16 21 21 C 1.46901 * 111.00172 * 159.71827 * 20 19 18 22 22 C 1.53000 * 109.46769 * 52.60936 * 21 20 19 23 23 F 1.39895 * 109.47411 * 59.99686 * 22 21 20 24 24 F 1.39898 * 109.46890 * 180.02562 * 22 21 20 25 25 F 1.39904 * 109.47059 * 299.99428 * 22 21 20 26 26 C 1.47912 * 105.81750 * 39.20906 * 20 19 18 27 27 H 0.97002 * 120.00341 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00461 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47403 * 60.00074 * 10 9 7 30 30 H 1.08999 * 109.47315 * 300.00099 * 10 9 7 31 31 H 1.08998 * 109.47638 * 59.99885 * 11 10 9 32 32 H 1.09009 * 109.46916 * 299.99954 * 11 10 9 33 33 H 1.08994 * 109.47558 * 59.99475 * 12 11 10 34 34 H 1.09009 * 109.46850 * 299.99683 * 12 11 10 35 35 H 0.96995 * 119.99497 * 359.97438 * 13 12 11 36 36 H 1.09002 * 110.71950 * 259.27335 * 18 16 14 37 37 H 1.09000 * 110.72900 * 22.37975 * 18 16 14 38 38 H 1.08997 * 110.67236 * 204.14971 * 19 18 16 39 39 H 1.09001 * 110.67169 * 81.02116 * 19 18 16 40 40 H 1.09002 * 109.47401 * 292.60643 * 21 20 19 41 41 H 1.09001 * 109.46874 * 172.60656 * 21 20 19 42 42 H 1.08997 * 109.91505 * 94.02357 * 26 20 19 43 43 H 1.08996 * 109.91557 * 215.32097 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 6 6.3815 -3.5161 -0.0017 13 7 7.8218 -3.2483 -0.0011 14 6 8.6977 -4.2727 -0.0020 15 8 8.2934 -5.4162 -0.0029 16 6 10.1792 -3.9973 -0.0020 17 1 10.4512 -3.3936 -0.8678 18 6 10.5939 -3.2806 1.3035 19 6 11.9562 -3.9367 1.6413 20 7 11.7573 -5.3550 1.2477 21 6 13.0457 -6.0291 1.0387 22 6 13.9310 -5.8301 2.2706 23 9 13.2971 -6.3734 3.3932 24 9 15.1582 -6.4715 2.0714 25 9 14.1475 -4.4629 2.4733 26 6 10.9687 -5.3195 -0.0031 27 1 -0.4851 0.8400 -0.0004 28 1 3.8646 -0.3620 -0.0007 29 1 3.8486 -3.0425 -0.8908 30 1 3.8492 -3.0422 0.8891 31 1 5.8798 -1.6195 0.8889 32 1 5.8797 -1.6195 -0.8911 33 1 6.1181 -4.0873 -0.8918 34 1 6.1182 -4.0880 0.8882 35 1 8.1450 -2.3338 -0.0008 36 1 10.7125 -2.2102 1.1349 37 1 9.8665 -3.4669 2.0937 38 1 12.1665 -3.8594 2.7080 39 1 12.7569 -3.4838 1.0566 40 1 13.5396 -5.6058 0.1641 41 1 12.8770 -7.0943 0.8807 42 1 11.6363 -5.3527 -0.8640 43 1 10.2794 -6.1634 -0.0316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164588782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:20 Heat of formation + Delta-G solvation = -197.585178 kcal Electronic energy + Delta-G solvation = -26965.217754 eV Core-core repulsion = 22436.565484 eV Total energy + Delta-G solvation = -4528.652270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.13466 -48.68951 -48.56269 -41.30467 -39.29325 -37.60064 -35.95502 -34.28836 -33.71439 -31.70438 -30.09649 -29.24310 -27.05574 -24.58369 -24.06502 -23.02834 -22.68013 -22.38137 -20.84217 -19.65628 -19.59700 -19.44710 -18.51617 -18.21530 -17.21189 -16.88904 -16.61569 -16.44418 -16.02568 -15.77320 -15.54547 -15.48865 -15.31005 -15.24607 -15.02110 -14.82902 -14.77154 -14.74648 -14.55180 -13.99277 -13.78926 -13.71542 -13.32724 -12.94763 -12.87638 -12.60784 -12.55773 -12.54160 -12.34043 -12.25012 -12.07908 -12.00223 -11.80656 -11.77589 -10.97890 -10.81948 -10.09499 -9.61309 -9.31897 -8.03147 -5.38353 1.38503 1.44210 1.51617 1.63558 1.70523 2.15238 2.49368 2.53737 2.79713 3.05303 3.27855 3.29990 3.45969 3.56424 3.64129 3.82833 4.08666 4.09049 4.23538 4.25208 4.26069 4.31312 4.37933 4.39691 4.61052 4.72237 4.72478 4.86797 4.87250 4.93590 5.02984 5.08840 5.26053 5.29336 5.45039 5.63792 5.69689 5.74561 6.20243 6.57429 7.07264 7.26927 7.81682 8.02873 9.18275 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.001795 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.823841 B =15592.489938 C =15969.816982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.758 5.758 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.131 3.869 13 N -0.714 5.714 14 C 0.517 3.483 15 O -0.582 6.582 16 C -0.112 4.112 17 H 0.139 0.861 18 C -0.110 4.110 19 C 0.022 3.978 20 N -0.531 5.531 21 C 0.004 3.996 22 C 0.454 3.546 23 F -0.187 7.187 24 F -0.185 7.185 25 F -0.185 7.185 26 C 0.048 3.952 27 H 0.259 0.741 28 H 0.369 0.631 29 H 0.025 0.975 30 H 0.022 0.978 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.338 -7.726 0.329 38.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.006 3.994 13 N -0.366 5.366 14 C 0.304 3.696 15 O -0.462 6.462 16 C -0.134 4.134 17 H 0.157 0.843 18 C -0.148 4.148 19 C -0.105 4.105 20 N -0.257 5.257 21 C -0.125 4.125 22 C 0.400 3.600 23 F -0.169 7.169 24 F -0.167 7.167 25 F -0.166 7.166 26 C -0.079 4.079 27 H 0.067 0.933 28 H 0.203 0.797 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.254 0.746 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.100 0.900 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 36.596 -8.944 0.764 37.681 hybrid contribution 0.214 1.474 -0.210 1.505 sum 36.810 -7.469 0.554 37.565 Atomic orbital electron populations 1.69908 1.07372 1.26882 1.59364 1.25653 0.96271 1.01801 1.02275 0.85281 0.78739 0.78703 0.78260 1.20127 1.22361 1.16914 1.19047 0.82905 0.93502 1.41942 0.93012 1.42640 1.02416 1.04219 1.91104 1.20669 0.90837 0.87532 0.98364 1.21751 0.93200 0.96992 1.03966 1.21063 0.79695 0.96886 1.01749 1.45863 1.05900 1.10214 1.74655 1.20942 0.89648 0.84424 0.74591 1.90693 1.80839 1.23284 1.51394 1.22194 0.89699 0.98878 1.02633 0.84325 1.22549 0.96389 1.01117 0.94736 1.23737 0.97648 0.86851 1.02265 1.64873 1.13888 1.15882 1.31029 1.23564 0.90161 1.05606 0.93192 1.20684 0.79467 0.73539 0.86302 1.93199 1.81929 1.85847 1.55927 1.93193 1.46436 1.81977 1.95090 1.93175 1.95139 1.32446 1.95877 1.22871 0.96580 0.98038 0.90409 0.93266 0.79721 0.95706 0.95991 0.90039 0.89725 0.92076 0.92521 0.74610 0.86772 0.91760 0.89770 0.90531 0.87367 0.85087 0.90011 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.96 44.26 27.74 68.60 1.90 46.16 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.24 -9.81 6.52 99.48 0.65 -9.16 16 7 C -0.24 -13.98 10.47 84.03 0.88 -13.10 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 N -0.76 -34.58 5.41 -343.46 -1.86 -36.44 16 10 C 0.15 5.54 6.26 86.38 0.54 6.08 16 11 C -0.12 -2.94 5.44 30.59 0.17 -2.77 16 12 C 0.13 2.99 5.67 86.38 0.49 3.48 16 13 N -0.71 -12.12 5.53 -463.05 -2.56 -14.68 16 14 C 0.52 10.15 7.01 87.66 0.61 10.76 16 15 O -0.58 -17.19 15.24 -3.05 -0.05 -17.23 16 16 C -0.11 -1.23 3.38 -10.66 -0.04 -1.26 16 17 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 18 C -0.11 -1.02 6.58 31.80 0.21 -0.81 16 19 C 0.02 0.22 4.69 86.65 0.41 0.63 16 20 N -0.53 -6.84 5.32 -883.00 -4.70 -11.54 16 21 C 0.00 0.04 5.15 86.30 0.44 0.48 16 22 C 0.45 5.60 3.07 71.98 0.22 5.82 16 23 F -0.19 -3.25 17.24 44.97 0.78 -2.48 16 24 F -0.19 -2.41 17.32 44.97 0.78 -1.63 16 25 F -0.18 -2.34 13.56 44.97 0.61 -1.73 16 26 C 0.05 0.60 6.30 86.44 0.54 1.15 16 27 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.37 15.48 5.53 -92.71 -0.51 14.96 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.42 4.29 8.47 -92.71 -0.79 3.50 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.06 0.88 7.86 -2.39 -0.02 0.86 16 38 H 0.08 1.06 6.97 -2.39 -0.02 1.04 16 39 H 0.08 0.52 7.36 -2.39 -0.02 0.50 16 40 H 0.11 0.38 7.81 -2.39 -0.02 0.36 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.57 7.57 -2.39 -0.02 0.56 16 43 H 0.08 1.61 6.42 -2.39 -0.02 1.59 16 Total: -1.00 -77.60 359.21 -0.15 -77.76 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -0.31 Total: 18.04 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 4.95 Total: 6.87 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -8.81 Total: -125.76 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 2.16 Total: -5.84 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -77.60 -0.15 -77.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164588782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.827 kcal (2) G-P(sol) polarization free energy of solvation -77.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds