Wall clock time and date at job start Tue Mar 31 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99781 * 2 1 4 4 H 1.48504 * 109.47410 * 270.00093 * 3 2 1 5 5 H 1.48496 * 109.47473 * 30.00098 * 3 2 1 6 6 H 1.48503 * 109.47383 * 150.00130 * 3 2 1 7 7 C 1.38810 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00215 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00176 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47288 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47248 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00175 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99849 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00152 * 180.02562 * 14 13 12 17 17 H 1.09007 * 110.62274 * 56.89658 * 16 14 13 18 18 C 1.55139 * 110.70553 * 293.60079 * 16 14 13 19 19 C 1.54903 * 101.65117 * 205.96066 * 18 16 14 20 20 N 1.47844 * 104.79617 * 37.06999 * 19 18 16 21 21 C 1.46899 * 111.00226 * 213.63396 * 20 19 18 22 22 C 1.52997 * 109.47254 * 290.84366 * 21 20 19 23 23 F 1.39900 * 109.47010 * 59.99630 * 22 21 20 24 24 F 1.39897 * 109.47422 * 179.97438 * 22 21 20 25 25 F 1.39905 * 109.47157 * 300.00021 * 22 21 20 26 26 C 1.47446 * 108.56735 * 335.90277 * 20 19 18 27 27 H 0.97001 * 120.00343 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00007 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47400 * 60.00026 * 10 9 7 30 30 H 1.08997 * 109.46928 * 299.99667 * 10 9 7 31 31 H 1.09003 * 109.46772 * 59.99643 * 11 10 9 32 32 H 1.09005 * 109.47082 * 300.00391 * 11 10 9 33 33 H 1.09003 * 109.46842 * 59.99870 * 12 11 10 34 34 H 1.08997 * 109.47219 * 300.00023 * 12 11 10 35 35 H 0.97005 * 119.99654 * 0.02562 * 13 12 11 36 36 H 1.08993 * 110.98967 * 324.05450 * 18 16 14 37 37 H 1.09006 * 110.98755 * 87.87190 * 18 16 14 38 38 H 1.09001 * 110.37826 * 278.23995 * 19 18 16 39 39 H 1.09001 * 110.37545 * 155.89939 * 19 18 16 40 40 H 1.09002 * 109.47043 * 50.84437 * 21 20 19 41 41 H 1.09001 * 109.47354 * 170.84499 * 21 20 19 42 42 H 1.09003 * 109.88523 * 120.39601 * 26 20 19 43 43 H 1.08999 * 109.89031 * 241.58295 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1913 -0.0013 12 6 6.3814 -3.5162 -0.0006 13 7 7.8218 -3.2485 -0.0025 14 6 8.6976 -4.2729 -0.0028 15 8 8.2933 -5.4163 -0.0021 16 6 10.1793 -3.9975 -0.0041 17 1 10.4556 -3.3792 0.8500 18 6 10.6113 -3.3266 -1.3346 19 6 12.0995 -3.7462 -1.4277 20 7 12.1366 -5.1259 -0.8978 21 6 13.3972 -5.3840 -0.1892 22 6 14.5493 -5.4218 -1.1952 23 9 14.6301 -4.1925 -1.8581 24 9 15.7499 -5.6670 -0.5203 25 9 14.3213 -6.4400 -2.1273 26 6 10.9794 -5.3169 -0.0042 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0011 29 1 3.8485 -3.0426 -0.8897 30 1 3.8492 -3.0421 0.8902 31 1 5.8804 -1.6192 0.8882 32 1 5.8790 -1.6200 -0.8917 33 1 6.1174 -4.0886 -0.8900 34 1 6.1188 -4.0870 0.8900 35 1 8.1451 -2.3339 -0.0035 36 1 10.0406 -3.7222 -2.1747 37 1 10.5143 -2.2425 -1.2746 38 1 12.7182 -3.0885 -0.8172 39 1 12.4344 -3.7289 -2.4648 40 1 13.5748 -4.5907 0.5370 41 1 13.3343 -6.3419 0.3272 42 1 10.3547 -6.1295 -0.3751 43 1 11.3236 -5.5420 1.0052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164588783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:23 Heat of formation + Delta-G solvation = -203.290680 kcal Electronic energy + Delta-G solvation = -26817.434202 eV Core-core repulsion = 22288.534523 eV Total energy + Delta-G solvation = -4528.899679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.03664 -48.59232 -48.49971 -41.30732 -39.37633 -37.60923 -35.96251 -34.21890 -33.69630 -31.71115 -30.15007 -29.24677 -27.06450 -24.58325 -24.02230 -23.10290 -22.68350 -22.17520 -20.92729 -19.65748 -19.51071 -19.39160 -18.68169 -18.16707 -17.24952 -16.88993 -16.61130 -16.42262 -15.84362 -15.77115 -15.50694 -15.45819 -15.31119 -15.05021 -14.96592 -14.81677 -14.72040 -14.68168 -14.54401 -14.03164 -13.84934 -13.78138 -13.56872 -12.99448 -12.88110 -12.73030 -12.55181 -12.54090 -12.32763 -12.14548 -12.08426 -12.00124 -11.83295 -11.80622 -10.98046 -10.86447 -10.10794 -9.56156 -9.32000 -8.03290 -5.38494 1.38287 1.44074 1.51443 1.60454 1.74386 2.13102 2.49233 2.54936 2.88877 3.09635 3.27785 3.29954 3.52790 3.55099 3.57648 3.85203 4.07773 4.08498 4.19210 4.24783 4.27127 4.30373 4.32461 4.35868 4.56642 4.71991 4.72244 4.86695 4.91866 4.93451 5.04911 5.14178 5.25707 5.29164 5.43785 5.66679 5.73452 5.74438 6.20095 6.55324 7.07175 7.24497 7.81611 8.02685 9.18138 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.001747 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.381329 B =16025.052174 C =16515.434854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.244 1.244 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.758 5.758 10 C 0.152 3.848 11 C -0.121 4.121 12 C 0.130 3.870 13 N -0.713 5.713 14 C 0.520 3.480 15 O -0.583 6.583 16 C -0.123 4.123 17 H 0.137 0.863 18 C -0.113 4.113 19 C 0.035 3.965 20 N -0.541 5.541 21 C 0.007 3.993 22 C 0.455 3.545 23 F -0.188 7.188 24 F -0.187 7.187 25 F -0.188 7.188 26 C 0.062 3.938 27 H 0.259 0.741 28 H 0.369 0.631 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.417 0.583 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.077 0.923 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.970 -6.628 0.705 37.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.168 1.168 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.006 3.994 13 N -0.365 5.365 14 C 0.307 3.693 15 O -0.463 6.463 16 C -0.145 4.145 17 H 0.155 0.845 18 C -0.151 4.151 19 C -0.092 4.092 20 N -0.266 5.266 21 C -0.123 4.123 22 C 0.401 3.599 23 F -0.170 7.170 24 F -0.169 7.169 25 F -0.170 7.170 26 C -0.066 4.066 27 H 0.067 0.933 28 H 0.203 0.797 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.151 0.849 42 H 0.095 0.905 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 36.481 -7.912 0.277 37.330 hybrid contribution -0.053 1.560 0.301 1.590 sum 36.428 -6.352 0.577 36.982 Atomic orbital electron populations 1.69908 1.07377 1.26882 1.59357 1.25649 0.96264 1.01795 1.02272 0.85284 0.78763 0.78714 0.78233 1.20215 1.22352 1.16848 1.19049 0.82915 0.93499 1.41949 0.93009 1.42637 1.02410 1.04227 1.91108 1.20671 0.90843 0.87528 0.98376 1.21754 0.93196 0.97000 1.03977 1.21071 0.79636 0.96901 1.01822 1.45878 1.05925 1.10225 1.74506 1.20818 0.89345 0.84436 0.74735 1.90711 1.80956 1.23265 1.51393 1.22543 0.89894 0.99652 1.02398 0.84532 1.22743 0.95217 1.02297 0.94839 1.23372 0.96829 0.87208 1.01765 1.63452 1.01034 1.27412 1.34716 1.23554 0.87395 1.08139 0.93217 1.20746 0.84018 0.73233 0.81948 1.93166 1.96598 1.44347 1.82848 1.93186 1.49500 1.94228 1.79982 1.93189 1.94542 1.60752 1.68508 1.22666 0.90333 0.97057 0.96498 0.93268 0.79725 0.95852 0.95826 0.89884 0.89868 0.92344 0.92112 0.74582 0.91553 0.86862 0.90496 0.89879 0.87331 0.84914 0.90519 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.20 13.97 21.65 0.30 -62.89 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.96 44.03 27.73 68.60 1.90 45.94 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.24 -9.70 6.52 99.48 0.65 -9.05 16 7 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 9 N -0.76 -34.31 5.41 -343.46 -1.86 -36.17 16 10 C 0.15 5.47 6.26 86.38 0.54 6.01 16 11 C -0.12 -2.88 5.44 30.59 0.17 -2.71 16 12 C 0.13 2.88 5.67 86.38 0.49 3.37 16 13 N -0.71 -11.53 5.56 -463.06 -2.57 -14.10 16 14 C 0.52 9.77 7.13 87.66 0.63 10.39 16 15 O -0.58 -16.74 15.42 -3.03 -0.05 -16.79 16 16 C -0.12 -1.27 3.33 -10.36 -0.03 -1.30 16 17 H 0.14 0.60 8.14 -2.38 -0.02 0.58 16 18 C -0.11 -0.96 6.51 31.98 0.21 -0.76 16 19 C 0.04 0.32 5.08 86.77 0.44 0.76 16 20 N -0.54 -6.28 5.09 -885.56 -4.50 -10.79 16 21 C 0.01 0.05 4.69 86.30 0.40 0.45 16 22 C 0.46 5.49 3.26 71.98 0.23 5.72 16 23 F -0.19 -2.48 14.70 44.97 0.66 -1.82 16 24 F -0.19 -2.38 17.32 44.97 0.78 -1.60 16 25 F -0.19 -3.19 17.24 44.97 0.78 -2.42 16 26 C 0.06 0.77 6.29 86.64 0.55 1.31 16 27 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.37 15.34 5.53 -92.71 -0.51 14.83 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.42 3.96 8.47 -92.70 -0.79 3.17 16 36 H 0.07 0.86 8.04 -2.39 -0.02 0.84 16 37 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.08 0.42 7.36 -2.39 -0.02 0.41 16 39 H 0.08 0.94 7.52 -2.39 -0.02 0.92 16 40 H 0.11 0.28 7.85 -2.39 -0.02 0.27 16 41 H 0.13 0.68 8.03 -2.39 -0.02 0.66 16 42 H 0.08 1.50 6.81 -2.39 -0.02 1.49 16 43 H 0.08 0.71 7.55 -2.39 -0.02 0.70 16 Total: -1.00 -77.15 361.47 0.10 -77.05 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.31 Total: 16.93 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 4.97 Total: 6.66 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -8.63 Total: -123.95 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.05 Total: -16.79 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 2.21 Total: -5.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.94 kcal Total: -77.15 0.10 -77.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164588783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.236 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds