Wall clock time and date at job start Tue Mar 31 2020 14:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35277 * 126.70790 * 2 1 4 4 C 1.41928 * 103.95804 * 180.02562 * 3 2 1 5 5 O 1.35713 * 126.88021 * 180.26164 * 4 3 2 6 6 C 1.42895 * 117.00408 * 179.71139 * 5 4 3 7 7 C 1.50699 * 109.47227 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99951 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99680 * 180.02562 * 7 6 5 10 10 C 1.46509 * 119.99557 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46754 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46738 * 175.02144 * 11 10 9 13 13 C 1.53004 * 115.55198 * 278.03048 * 12 11 10 14 14 N 1.46505 * 109.47030 * 303.90357 * 13 12 11 15 15 C 1.36935 * 119.99848 * 175.59082 * 14 13 12 16 16 H 1.08004 * 120.00017 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00283 * 179.97438 * 15 14 13 18 18 N 1.31629 * 119.99458 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00355 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47000 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46857 * 120.00113 * 19 17 15 22 22 H 1.48502 * 109.47201 * 240.00275 * 19 17 15 23 23 C 1.53002 * 117.49671 * 132.32496 * 12 11 10 24 24 C 1.52999 * 60.00090 * 252.50884 * 23 12 11 25 25 N 1.30616 * 106.24690 * 0.02562 * 4 3 2 26 26 O 1.20921 * 111.49577 * 359.97438 * 25 4 3 27 27 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47156 * 299.94731 * 1 2 3 29 29 H 1.08998 * 109.47582 * 59.94571 * 1 2 3 30 30 H 1.07992 * 128.02292 * 0.04712 * 3 2 1 31 31 H 1.09001 * 109.46798 * 300.00311 * 6 5 4 32 32 H 1.09000 * 109.47152 * 60.00034 * 6 5 4 33 33 H 0.97002 * 120.00344 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.46820 * 299.99695 * 10 9 7 35 35 H 1.09000 * 109.47299 * 59.99729 * 10 9 7 36 36 H 1.08992 * 109.46882 * 295.02285 * 11 10 9 37 37 H 1.09003 * 109.47254 * 55.02210 * 11 10 9 38 38 H 1.09001 * 109.46918 * 63.89708 * 13 12 11 39 39 H 1.08999 * 109.47225 * 183.90273 * 13 12 11 40 40 H 0.96996 * 119.99888 * 355.58866 * 14 13 12 41 41 H 0.96997 * 119.99582 * 179.97438 * 18 17 15 42 42 H 1.08995 * 117.49584 * 359.97438 * 23 12 11 43 43 H 1.08997 * 117.49879 * 145.01925 * 23 12 11 44 44 H 1.08997 * 117.49978 * 252.51065 * 24 23 12 45 45 H 1.08999 * 117.50090 * 107.48595 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5357 -0.0006 5 8 4.7953 1.2218 0.0041 6 6 5.9988 0.4514 0.0088 7 6 7.1879 1.3771 0.0142 8 8 7.0212 2.5784 0.0137 9 7 8.4366 0.8700 0.0187 10 6 9.5926 1.7700 0.0246 11 6 10.8812 0.9450 0.0294 12 6 12.0860 1.8805 -0.0897 13 6 12.4291 2.3373 -1.5090 14 7 12.6399 1.1648 -2.3618 15 6 12.8709 1.3256 -3.7019 16 1 12.8981 2.3167 -4.1301 17 6 13.0712 0.2148 -4.5099 18 7 13.0385 -0.9931 -3.9879 19 14 13.3856 0.4341 -6.3381 20 1 13.3723 1.8808 -6.6726 21 1 14.7097 -0.1417 -6.6852 22 1 12.3252 -0.2626 -7.1098 23 6 13.2468 1.6646 0.8835 24 6 12.3244 2.8740 1.0493 25 7 3.4765 -0.7621 -0.0015 26 8 2.3084 -1.0749 -0.0010 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5130 0.8905 29 1 -0.3634 0.5146 -0.8894 30 1 2.0312 2.1263 0.0007 31 1 6.0241 -0.1774 0.8988 32 1 6.0313 -0.1772 -0.8812 33 1 8.5700 -0.0908 0.0187 34 1 9.5673 2.3997 -0.8648 35 1 9.5600 2.3976 0.9152 36 1 10.9487 0.3822 0.9603 37 1 10.8732 0.2537 -0.8133 38 1 11.6080 2.9333 -1.9073 39 1 13.3378 2.9389 -1.4874 40 1 12.6159 0.2747 -1.9772 41 1 13.1781 -1.7693 -4.5526 42 1 13.1518 0.8565 1.6087 43 1 14.2552 1.8479 0.5126 44 1 12.7259 3.8529 0.7874 45 1 11.6227 2.8612 1.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165601258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:41 Heat of formation + Delta-G solvation = 26.476860 kcal Electronic energy + Delta-G solvation = -26147.648165 eV Core-core repulsion = 22170.568694 eV Total energy + Delta-G solvation = -3977.079471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.20007 -40.13977 -38.77867 -38.12674 -34.89217 -34.19126 -33.95385 -32.85601 -30.86531 -30.59507 -28.59143 -27.93931 -25.94865 -23.72595 -23.50745 -22.74716 -21.99808 -21.53663 -20.66358 -18.67834 -18.18886 -18.16121 -17.21952 -17.13517 -16.90827 -16.46965 -15.89632 -15.35903 -14.93078 -14.65883 -14.37340 -14.26476 -14.14608 -13.84232 -13.71985 -13.37701 -13.22361 -13.07650 -12.85909 -12.72883 -12.36297 -12.00005 -11.92167 -11.46321 -11.42944 -11.15490 -10.95630 -10.86016 -10.62425 -10.14676 -9.97674 -9.92554 -9.85824 -9.66219 -9.50957 -9.35383 -9.09939 -8.85716 -6.91329 -5.77606 -3.05303 1.07642 1.96065 2.07106 2.44719 2.75881 3.30998 3.42891 3.49033 3.50906 3.86673 4.03116 4.42826 4.46916 4.59840 4.60436 4.74493 4.79976 4.84739 4.91491 4.99482 5.06464 5.12907 5.16761 5.29294 5.30229 5.50252 5.55156 5.58270 5.65441 5.72660 5.88975 6.13484 6.14192 6.18160 6.35952 6.41134 6.43171 6.56146 6.66294 6.75019 6.81906 7.35818 7.70604 7.92138 8.06381 8.41774 9.53458 10.11244 10.46876 11.45370 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.002269 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.068725 B =12335.644919 C =13997.112732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.256 6.256 6 C 0.045 3.955 7 C 0.516 3.484 8 O -0.520 6.520 9 N -0.720 5.720 10 C 0.128 3.872 11 C -0.093 4.093 12 C -0.119 4.119 13 C 0.187 3.813 14 N -0.728 5.728 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.166 4.166 24 C -0.178 4.178 25 N -0.411 5.411 26 O 0.099 5.901 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.026 0.974 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.777 1.062 13.726 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.161 6.161 6 C -0.034 4.034 7 C 0.300 3.700 8 O -0.395 6.395 9 N -0.373 5.373 10 C 0.005 3.995 11 C -0.130 4.130 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.372 5.372 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.203 4.203 24 C -0.215 4.215 25 N -0.139 5.139 26 O 0.039 5.961 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.196 0.804 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.947 1.329 13.554 24.985 hybrid contribution 0.218 -0.134 -0.951 0.984 sum -20.729 1.195 12.603 24.289 Atomic orbital electron populations 1.20389 0.83464 1.04975 1.04437 1.24359 0.96506 0.85573 1.00851 1.21795 0.88273 1.01776 1.13652 1.22062 0.88446 0.88034 0.99867 1.86281 1.09991 1.30749 1.89050 1.22506 0.82306 0.93668 1.04924 1.19836 0.83843 0.88949 0.77393 1.90759 1.85601 1.15115 1.48060 1.45851 1.05142 1.11082 1.75202 1.21414 0.83001 0.92397 1.02684 1.21276 0.91214 0.97564 1.02992 1.21565 0.96555 1.00768 0.93113 1.20185 0.97039 0.90769 0.86036 1.42313 1.86387 1.03417 1.05087 1.19284 1.40306 0.92791 0.84387 0.91186 1.24721 1.02994 0.95269 0.98082 1.69669 1.57137 0.96938 1.34521 0.86127 0.77413 0.77227 0.85515 1.20575 1.21902 1.21904 1.22997 0.95835 0.99526 1.01914 1.22971 1.03448 0.94872 1.00239 1.74175 0.97941 1.14189 1.27568 1.84802 1.10295 1.31996 1.69055 0.89573 0.88855 0.88813 0.80353 0.88583 0.88300 0.76217 0.90639 0.91563 0.91872 0.89069 0.95617 0.96400 0.78153 0.93634 0.89294 0.88652 0.88893 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.45 36.00 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.37 -0.26 -0.33 16 3 C -0.23 -2.14 11.11 -39.23 -0.44 -2.57 16 4 C 0.21 2.63 8.01 -16.66 -0.13 2.50 16 5 O -0.26 -3.56 9.74 -38.76 -0.38 -3.94 16 6 C 0.04 0.53 6.14 36.01 0.22 0.75 16 7 C 0.52 7.38 7.91 -10.99 -0.09 7.29 16 8 O -0.52 -9.62 16.50 -14.35 -0.24 -9.85 16 9 N -0.72 -9.09 5.56 -60.29 -0.33 -9.43 16 10 C 0.13 1.81 5.49 -4.04 -0.02 1.79 16 11 C -0.09 -1.34 5.20 -26.73 -0.14 -1.48 16 12 C -0.12 -1.88 1.65 -154.50 -0.25 -2.14 16 13 C 0.19 3.78 6.15 -4.04 -0.02 3.75 16 14 N -0.73 -18.11 5.23 -59.90 -0.31 -18.43 16 15 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 19 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 C -0.17 -2.37 9.87 -26.73 -0.26 -2.64 16 24 C -0.18 -2.34 9.57 -26.73 -0.26 -2.60 16 25 N -0.41 -4.99 11.54 30.38 0.35 -4.64 16 26 O 0.10 1.00 11.19 17.06 0.19 1.19 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.40 4.02 8.47 -40.82 -0.35 3.68 16 34 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 35 H 0.07 0.91 7.72 -51.93 -0.40 0.51 16 36 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 37 H 0.09 1.55 6.94 -51.93 -0.36 1.19 16 38 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16 39 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.38 9.95 6.80 -40.82 -0.28 9.67 16 41 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.09 1.14 8.07 -51.93 -0.42 0.73 16 43 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -35.28 387.23 -7.51 -42.79 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.80 Total: 8.95 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.53 Total: -2.80 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.43 Total: -59.71 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.42 Total: -12.61 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.28 -7.51 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165601258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.269 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds