Wall clock time and date at job start Tue Mar 31 2020 14:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35277 * 126.70790 * 2 1 4 4 C 1.41928 * 103.95804 * 180.02562 * 3 2 1 5 5 O 1.35713 * 126.88021 * 180.26164 * 4 3 2 6 6 C 1.42895 * 117.00408 * 179.71139 * 5 4 3 7 7 C 1.50699 * 109.47227 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99951 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99680 * 180.02562 * 7 6 5 10 10 C 1.46509 * 119.99557 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46754 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46738 * 175.02144 * 11 10 9 13 13 C 1.53004 * 115.55198 * 278.03048 * 12 11 10 14 14 N 1.46505 * 109.47030 * 303.90357 * 13 12 11 15 15 C 1.36935 * 119.99848 * 175.59082 * 14 13 12 16 16 H 1.08004 * 120.00017 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00283 * 179.97438 * 15 14 13 18 18 N 1.31629 * 119.99458 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00355 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47000 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46857 * 120.00113 * 19 17 15 22 22 H 1.48502 * 109.47201 * 240.00275 * 19 17 15 23 23 C 1.53002 * 117.49671 * 132.32496 * 12 11 10 24 24 C 1.52999 * 60.00090 * 252.50884 * 23 12 11 25 25 N 1.30616 * 106.24690 * 0.02562 * 4 3 2 26 26 O 1.20921 * 111.49577 * 359.97438 * 25 4 3 27 27 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47156 * 299.94731 * 1 2 3 29 29 H 1.08998 * 109.47582 * 59.94571 * 1 2 3 30 30 H 1.07992 * 128.02292 * 0.04712 * 3 2 1 31 31 H 1.09001 * 109.46798 * 300.00311 * 6 5 4 32 32 H 1.09000 * 109.47152 * 60.00034 * 6 5 4 33 33 H 0.97002 * 120.00344 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.46820 * 299.99695 * 10 9 7 35 35 H 1.09000 * 109.47299 * 59.99729 * 10 9 7 36 36 H 1.08992 * 109.46882 * 295.02285 * 11 10 9 37 37 H 1.09003 * 109.47254 * 55.02210 * 11 10 9 38 38 H 1.09001 * 109.46918 * 63.89708 * 13 12 11 39 39 H 1.08999 * 109.47225 * 183.90273 * 13 12 11 40 40 H 0.96996 * 119.99888 * 355.58866 * 14 13 12 41 41 H 0.96997 * 119.99582 * 179.97438 * 18 17 15 42 42 H 1.08995 * 117.49584 * 359.97438 * 23 12 11 43 43 H 1.08997 * 117.49879 * 145.01925 * 23 12 11 44 44 H 1.08997 * 117.49978 * 252.51065 * 24 23 12 45 45 H 1.08999 * 117.50090 * 107.48595 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5357 -0.0006 5 8 4.7953 1.2218 0.0041 6 6 5.9988 0.4514 0.0088 7 6 7.1879 1.3771 0.0142 8 8 7.0212 2.5784 0.0137 9 7 8.4366 0.8700 0.0187 10 6 9.5926 1.7700 0.0246 11 6 10.8812 0.9450 0.0294 12 6 12.0860 1.8805 -0.0897 13 6 12.4291 2.3373 -1.5090 14 7 12.6399 1.1648 -2.3618 15 6 12.8709 1.3256 -3.7019 16 1 12.8981 2.3167 -4.1301 17 6 13.0712 0.2148 -4.5099 18 7 13.0385 -0.9931 -3.9879 19 14 13.3856 0.4341 -6.3381 20 1 13.3723 1.8808 -6.6726 21 1 14.7097 -0.1417 -6.6852 22 1 12.3252 -0.2626 -7.1098 23 6 13.2468 1.6646 0.8835 24 6 12.3244 2.8740 1.0493 25 7 3.4765 -0.7621 -0.0015 26 8 2.3084 -1.0749 -0.0010 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5130 0.8905 29 1 -0.3634 0.5146 -0.8894 30 1 2.0312 2.1263 0.0007 31 1 6.0241 -0.1774 0.8988 32 1 6.0313 -0.1772 -0.8812 33 1 8.5700 -0.0908 0.0187 34 1 9.5673 2.3997 -0.8648 35 1 9.5600 2.3976 0.9152 36 1 10.9487 0.3822 0.9603 37 1 10.8732 0.2537 -0.8133 38 1 11.6080 2.9333 -1.9073 39 1 13.3378 2.9389 -1.4874 40 1 12.6159 0.2747 -1.9772 41 1 13.1781 -1.7693 -4.5526 42 1 13.1518 0.8565 1.6087 43 1 14.2552 1.8479 0.5126 44 1 12.7259 3.8529 0.7874 45 1 11.6227 2.8612 1.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165601258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:40 Heat of formation + Delta-G solvation = 1.195188 kcal Electronic energy + Delta-G solvation = -26148.744461 eV Core-core repulsion = 22170.568694 eV Total energy + Delta-G solvation = -3978.175766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.97238 -41.24336 -39.87344 -39.32413 -36.19072 -35.80396 -34.79778 -33.60845 -32.81025 -31.80048 -29.48391 -28.55060 -27.77606 -24.71645 -24.60734 -24.50092 -23.11178 -22.47462 -21.72580 -20.02387 -19.18861 -18.96276 -18.92754 -18.13273 -17.89298 -17.46782 -17.04365 -16.75244 -16.42814 -16.01411 -15.62411 -15.46021 -15.04646 -14.91972 -14.76568 -14.48943 -14.23282 -14.13859 -13.94462 -13.91727 -13.24416 -13.20186 -13.05062 -12.92505 -12.83973 -12.57344 -12.29008 -12.15801 -12.10985 -11.96076 -11.86600 -11.21714 -11.10471 -10.93322 -10.56494 -10.53449 -10.31588 -10.24854 -8.98728 -7.96905 -5.24079 0.42205 1.14445 1.16578 1.31899 1.44856 1.45083 1.55100 2.13351 2.38409 2.52614 2.88065 3.08307 3.36381 3.45383 3.79681 3.81701 3.83206 3.87983 3.92661 3.95856 3.97152 4.06417 4.23008 4.36703 4.37132 4.45366 4.60505 4.77064 4.79246 4.83301 4.89240 4.91462 4.95199 5.06820 5.13799 5.23898 5.26810 5.30458 5.32937 5.36287 5.47839 5.77452 6.26085 6.31633 6.97373 7.19216 7.33271 8.09151 8.35189 9.26415 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.002269 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.068725 B =12335.644919 C =13997.112732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.251 4.251 4 C 0.189 3.811 5 O -0.280 6.280 6 C 0.050 3.950 7 C 0.516 3.484 8 O -0.567 6.567 9 N -0.708 5.708 10 C 0.135 3.865 11 C -0.079 4.079 12 C -0.142 4.142 13 C 0.187 3.813 14 N -0.735 5.735 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.072 4.072 18 N -0.964 5.964 19 Si 0.969 3.031 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.293 1.293 23 C -0.162 4.162 24 C -0.152 4.152 25 N -0.432 5.432 26 O 0.092 5.908 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.196 0.804 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.418 0.582 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.221 1.009 14.847 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 C -0.273 4.273 4 C -0.008 4.008 5 O -0.186 6.186 6 C -0.028 4.028 7 C 0.301 3.699 8 O -0.446 6.446 9 N -0.361 5.361 10 C 0.012 3.988 11 C -0.117 4.117 12 C -0.143 4.143 13 C 0.061 3.939 14 N -0.378 5.378 15 C -0.376 4.376 16 H 0.087 0.913 17 C -0.265 4.265 18 N -0.615 5.615 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.220 1.220 23 C -0.199 4.199 24 C -0.189 4.189 25 N -0.160 5.160 26 O 0.032 5.968 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.213 0.787 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.210 0.790 41 H 0.060 0.940 42 H 0.127 0.873 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.386 1.270 14.690 26.805 hybrid contribution 0.606 -0.080 -1.274 1.413 sum -21.780 1.190 13.416 25.608 Atomic orbital electron populations 1.20686 0.79817 1.06459 1.06168 1.25166 0.98098 0.84077 0.97960 1.22161 0.87265 1.03217 1.14661 1.22472 0.88722 0.88625 1.01023 1.86225 1.10898 1.31964 1.89539 1.22513 0.80945 0.92871 1.06467 1.20275 0.84707 0.88631 0.76242 1.90730 1.86298 1.17160 1.50418 1.45754 1.04460 1.11768 1.74164 1.21249 0.83472 0.92409 1.01660 1.21125 0.90594 0.96804 1.03147 1.21406 0.98221 1.03363 0.91286 1.20237 0.96261 0.89194 0.88246 1.42448 1.86164 1.04471 1.04730 1.19628 1.39247 0.92771 0.85994 0.91254 1.25484 1.03732 0.95128 1.02146 1.69803 1.58525 0.97441 1.35743 0.85137 0.76883 0.77514 0.80628 1.19494 1.21845 1.22013 1.23061 0.94727 1.00885 1.01270 1.23059 1.02628 0.94387 0.98821 1.74151 0.99106 1.14302 1.28470 1.84754 1.10080 1.32976 1.68982 0.88243 0.86813 0.87044 0.78680 0.86230 0.87341 0.74516 0.93776 0.90486 0.88899 0.92021 0.96653 0.96770 0.78955 0.93990 0.87265 0.89872 0.88516 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.45 71.23 0.74 0.56 16 2 C 0.01 0.14 7.48 25.00 0.19 0.33 16 3 C -0.25 -4.41 11.11 22.50 0.25 -4.16 16 4 C 0.19 4.65 8.01 85.79 0.69 5.33 16 5 O -0.28 -7.95 9.74 -71.31 -0.69 -8.65 16 6 C 0.05 1.18 6.14 71.24 0.44 1.62 16 7 C 0.52 14.85 7.91 87.66 0.69 15.54 16 8 O -0.57 -21.50 16.50 16.01 0.26 -21.24 16 9 N -0.71 -17.61 5.56 -463.04 -2.57 -20.18 16 10 C 0.14 3.80 5.49 86.38 0.47 4.27 16 11 C -0.08 -2.21 5.20 30.60 0.16 -2.05 16 12 C -0.14 -4.37 1.65 -52.18 -0.09 -4.45 16 13 C 0.19 7.66 6.15 86.38 0.53 8.19 16 14 N -0.74 -37.35 5.23 -343.43 -1.80 -39.14 16 15 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 16 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 17 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 18 N -0.96 -58.57 13.06 21.65 0.28 -58.29 16 19 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 23 C -0.16 -4.33 9.87 30.59 0.30 -4.03 16 24 C -0.15 -3.62 9.57 30.59 0.29 -3.33 16 25 N -0.43 -10.40 11.54 -172.59 -1.99 -12.39 16 26 O 0.09 1.78 11.19 71.23 0.80 2.58 16 27 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.42 7.96 8.47 -92.71 -0.79 7.17 16 34 H 0.04 1.52 7.96 -2.39 -0.02 1.50 16 35 H 0.08 2.02 7.72 -2.39 -0.02 2.00 16 36 H 0.09 2.06 7.93 -2.39 -0.02 2.04 16 37 H 0.06 2.12 6.94 -2.39 -0.02 2.10 16 38 H 0.02 0.66 7.96 -2.39 -0.02 0.64 16 39 H 0.01 0.60 8.10 -2.39 -0.02 0.58 16 40 H 0.38 20.01 6.80 -92.71 -0.63 19.38 16 41 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.11 2.48 8.07 -2.39 -0.02 2.46 16 43 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.11 2.23 7.90 -2.39 -0.02 2.21 16 Total: -1.00 -78.31 387.23 1.90 -76.41 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.40 Total: 30.99 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.98 Total: 1.06 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -6.08 Total: -130.00 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: 0.37 Total: -27.31 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -78.31 1.90 -76.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165601258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.607 kcal (2) G-P(sol) polarization free energy of solvation -78.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds