Wall clock time and date at job start Tue Mar 31 2020 14:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.36135 * 117.00258 * 2 1 4 4 C 1.38444 * 120.78661 * 0.02562 * 3 2 1 5 5 N 1.32582 * 119.22946 * 179.97438 * 4 3 2 6 6 C 1.32441 * 120.96310 * 0.02562 * 5 4 3 7 7 S 1.76198 * 119.13505 * 180.02562 * 6 5 4 8 8 C 1.80999 * 99.99847 * 359.97438 * 7 6 5 9 9 N 1.32509 * 121.72844 * 359.73753 * 6 5 4 10 10 C 1.32851 * 120.66715 * 0.52676 * 9 6 5 11 11 N 1.38758 * 120.50651 * 179.76527 * 10 9 6 12 12 C 1.46895 * 110.99914 * 123.67336 * 11 10 9 13 13 C 1.50706 * 109.47182 * 169.99937 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 C 1.46899 * 110.99793 * 359.72200 * 11 10 9 22 22 C 1.54260 * 110.03380 * 56.11901 * 21 11 10 23 23 C 1.54896 * 104.19631 * 217.10362 * 22 21 11 24 24 C 1.54889 * 102.74608 * 37.94364 * 23 22 21 25 25 C 1.53883 * 110.03283 * 298.95042 * 21 11 10 26 26 H 1.09003 * 109.47674 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47136 * 299.99746 * 1 2 3 28 28 H 1.09002 * 109.47312 * 60.00137 * 1 2 3 29 29 H 1.07997 * 120.38666 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.47325 * 60.00437 * 8 7 6 31 31 H 1.09002 * 109.47359 * 179.97438 * 8 7 6 32 32 H 1.08998 * 109.47544 * 300.00201 * 8 7 6 33 33 H 1.09001 * 109.47613 * 50.00283 * 12 11 10 34 34 H 1.08998 * 109.47678 * 290.00179 * 12 11 10 35 35 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 36 36 H 1.08999 * 110.01583 * 177.56809 * 21 11 10 37 37 H 1.08997 * 110.49065 * 335.78395 * 22 21 11 38 38 H 1.09004 * 110.48622 * 98.42923 * 22 21 11 39 39 H 1.09001 * 110.75560 * 279.62908 * 23 22 21 40 40 H 1.08999 * 110.91306 * 156.33427 * 23 22 21 41 41 H 1.09001 * 110.48847 * 203.37808 * 24 23 22 42 42 H 1.09003 * 110.48674 * 80.73685 * 24 23 22 43 43 H 1.08995 * 110.03574 * 238.57370 * 25 21 11 44 44 H 1.09005 * 110.02676 * 0.02562 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0470 1.2129 0.0000 4 6 1.3090 2.3843 0.0005 5 7 1.9429 3.5488 0.0010 6 6 3.2661 3.6043 0.0005 7 16 4.0587 5.1780 0.0019 8 6 2.6080 6.2605 0.0029 9 7 4.0096 2.5075 0.0047 10 6 3.4440 1.3054 -0.0010 11 7 4.2258 0.1591 -0.0015 12 6 3.8900 -0.7076 1.1359 13 6 4.5733 -2.0407 0.9707 14 1 5.1951 -2.2253 0.1072 15 6 4.4095 -3.0224 1.9248 16 7 3.6574 -2.7952 2.9795 17 14 5.2570 -4.6744 1.7203 18 1 6.0399 -4.6762 0.4585 19 1 6.1683 -4.9089 2.8691 20 1 4.2361 -5.7516 1.6704 21 6 5.6554 0.4969 -0.0019 22 6 5.9843 1.4044 1.2014 23 6 7.0396 2.3962 0.6519 24 6 6.5373 2.6667 -0.7880 25 6 6.0071 1.2995 -1.2669 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2296 2.3499 0.0014 30 1 2.0096 6.0652 0.8928 31 1 2.9314 7.3014 0.0043 32 1 2.0094 6.0668 -0.8871 33 1 2.8107 -0.8550 1.1744 34 1 4.2259 -0.2394 2.0612 35 1 3.5424 -3.4857 3.6510 36 1 6.2538 -0.4131 0.0411 37 1 5.0934 1.9391 1.5307 38 1 6.4021 0.8172 2.0191 39 1 8.0287 1.9384 0.6364 40 1 7.0506 3.3161 1.2365 41 1 7.3586 3.0007 -1.4222 42 1 5.7357 3.4053 -0.7800 43 1 6.7767 0.7794 -1.8372 44 1 5.1167 1.4387 -1.8802 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:56 Heat of formation + Delta-G solvation = 22.311970 kcal Electronic energy + Delta-G solvation = -26922.538252 eV Core-core repulsion = 23388.031049 eV Total energy + Delta-G solvation = -3534.507203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59404 -40.01299 -39.23623 -36.44410 -34.89746 -33.80051 -31.71255 -29.81579 -29.70730 -29.25626 -28.37662 -27.78714 -25.18523 -24.57272 -23.66850 -21.60920 -20.92981 -19.31331 -18.95994 -18.65687 -18.41710 -17.16122 -16.88092 -16.72698 -16.37519 -15.88353 -15.74896 -15.40667 -15.28626 -14.80691 -14.62813 -14.43448 -14.26811 -13.97058 -13.71703 -13.37708 -13.16536 -13.08236 -12.82126 -12.72956 -12.51313 -12.28291 -12.20978 -11.96287 -11.85092 -11.77888 -11.63265 -11.57020 -11.44758 -11.34761 -11.09065 -10.65801 -10.41069 -10.02898 -9.20152 -8.41129 -8.23577 -6.32555 -0.10604 0.00239 0.31658 1.31506 1.39972 1.40688 1.54019 2.27454 2.35596 2.53454 2.81320 3.11229 3.20254 3.55080 3.74243 3.89569 3.90279 3.96252 4.21472 4.36093 4.37905 4.41947 4.44739 4.62023 4.66893 4.72527 4.74575 4.78593 4.86644 4.93953 5.03174 5.05409 5.08375 5.20854 5.27788 5.30993 5.35540 5.46290 5.60462 5.67081 5.76693 5.95472 6.11020 6.27435 6.52856 6.77068 6.92176 7.35098 8.88245 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.005139 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.087802 B = 5447.173165 C = 6838.698236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.312 6.312 3 C -0.011 4.011 4 C 0.088 3.912 5 N -0.519 5.519 6 C 0.252 3.748 7 S -0.006 6.006 8 C -0.135 4.135 9 N -0.490 5.490 10 C 0.334 3.666 11 N -0.461 5.461 12 C 0.215 3.785 13 C -0.523 4.523 14 H 0.061 0.939 15 C 0.012 3.988 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.277 1.277 21 C 0.090 3.910 22 C -0.130 4.130 23 C -0.099 4.099 24 C -0.103 4.103 25 C -0.095 4.095 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.203 0.797 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.043 0.957 34 H -0.028 1.028 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 15.648 -6.780 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.223 6.223 3 C -0.067 4.067 4 C -0.077 4.077 5 N -0.240 5.240 6 C -0.125 4.125 7 S 0.225 5.775 8 C -0.304 4.304 9 N -0.214 5.214 10 C 0.088 3.912 11 N -0.177 5.177 12 C 0.092 3.908 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.202 1.202 21 C -0.017 4.017 22 C -0.169 4.169 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.133 4.133 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.220 0.780 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.107 0.893 33 H 0.061 0.939 34 H -0.010 1.010 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.602 16.229 -7.047 17.765 hybrid contribution -1.761 -2.199 0.912 2.962 sum -3.364 14.030 -6.134 15.678 Atomic orbital electron populations 1.23388 0.76838 1.05492 1.02418 1.86442 1.23145 1.24472 1.88273 1.20410 0.92720 0.88093 1.05464 1.23460 1.01830 0.85488 0.96959 1.68592 1.08872 1.28175 1.18406 1.25192 0.89535 0.99121 0.98611 1.85549 1.11325 0.89270 1.91345 1.23610 0.98600 1.01413 1.06775 1.69212 1.37414 0.96150 1.18641 1.20198 0.88896 0.89757 0.92304 1.59254 1.05871 1.10626 1.41948 1.19606 0.97788 0.90198 0.83249 1.21308 1.29639 0.98037 1.07107 0.92098 1.25771 0.95932 1.02506 0.94511 1.70084 1.39915 1.35484 1.11364 0.85364 0.78336 0.78803 0.78326 1.18893 1.20385 1.20210 1.22346 0.85528 0.97661 0.96155 1.22777 0.99793 0.97382 0.96901 1.22221 0.96924 0.97958 0.96546 1.22324 1.00038 0.96382 0.95317 1.21999 0.99533 0.96468 0.95275 0.87354 0.91578 0.90400 0.78042 0.89703 0.85017 0.89340 0.93906 1.01037 0.92594 0.90680 0.92393 0.94798 0.91256 0.91236 0.91042 0.90229 0.91456 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.84 113.37 1.12 1.44 16 2 O -0.31 -12.16 7.92 -95.08 -0.75 -12.91 16 3 C -0.01 -0.42 6.41 22.75 0.15 -0.27 16 4 C 0.09 2.69 10.29 84.63 0.87 3.56 16 5 N -0.52 -16.06 9.12 -196.48 -1.79 -17.86 16 6 C 0.25 8.27 7.76 180.47 1.40 9.67 16 7 S -0.01 -0.15 21.32 -56.49 -1.20 -1.35 16 8 C -0.14 -2.29 9.61 113.37 1.09 -1.20 16 9 N -0.49 -18.31 3.12 -193.69 -0.60 -18.92 16 10 C 0.33 14.08 4.98 133.23 0.66 14.74 16 11 N -0.46 -21.60 4.45 -677.20 -3.01 -24.62 16 12 C 0.21 11.70 4.32 85.56 0.37 12.07 16 13 C -0.52 -29.77 8.43 25.60 0.22 -29.56 16 14 H 0.06 3.44 7.16 -2.91 -0.02 3.42 16 15 C 0.01 0.65 5.46 84.65 0.46 1.12 16 16 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 17 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.09 3.81 2.81 45.64 0.13 3.94 16 22 C -0.13 -5.18 4.73 31.67 0.15 -5.03 16 23 C -0.10 -3.05 6.90 31.89 0.22 -2.83 16 24 C -0.10 -3.09 6.18 31.67 0.20 -2.89 16 25 C -0.09 -3.33 5.72 31.32 0.18 -3.15 16 26 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.07 1.45 7.71 -2.38 -0.02 1.43 16 28 H 0.08 1.50 7.71 -2.39 -0.02 1.48 16 29 H 0.20 4.40 6.44 -2.91 -0.02 4.38 16 30 H 0.08 1.53 8.11 -2.39 -0.02 1.51 16 31 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.53 8.11 -2.40 -0.02 1.51 16 33 H 0.04 2.48 5.39 -2.39 -0.01 2.47 16 34 H -0.03 -1.68 7.21 -2.39 -0.02 -1.70 16 35 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.08 3.44 6.75 -2.39 -0.02 3.42 16 37 H 0.06 2.52 5.41 -2.39 -0.01 2.51 16 38 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 2.46 4.47 -2.39 -0.01 2.45 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.04 1.61 6.99 -2.38 -0.02 1.60 16 Total: -1.00 -68.59 350.28 3.16 -65.43 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.01 Total: 17.35 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 7.21 Total: 1.60 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -5.12 Total: -116.37 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.75 Total: -12.91 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.20 Total: -1.35 kcal Total: -68.59 3.16 -65.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.742 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds