Wall clock time and date at job start Tue Mar 31 2020 14:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35541 * 117.00200 * 2 1 4 4 C 1.38955 * 120.41873 * 179.97438 * 3 2 1 5 5 C 1.39274 * 118.45303 * 179.97438 * 4 3 2 6 6 N 1.38600 * 120.44954 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99781 * 4.98148 * 6 5 4 8 8 C 1.50707 * 109.47132 * 89.99912 * 7 6 5 9 9 H 1.07998 * 119.99654 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99786 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99640 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00502 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46990 * 90.00008 * 12 10 8 14 14 H 1.48494 * 109.47112 * 210.00284 * 12 10 8 15 15 H 1.48507 * 109.46814 * 330.00349 * 12 10 8 16 16 C 1.46500 * 120.00308 * 184.98105 * 6 5 4 17 17 C 1.54266 * 110.03208 * 57.16723 * 16 6 5 18 18 C 1.54883 * 104.19389 * 217.10938 * 17 16 6 19 19 C 1.54885 * 102.75475 * 37.94313 * 18 17 16 20 20 C 1.53873 * 110.02768 * 300.00052 * 16 6 5 21 21 N 1.33062 * 119.10380 * 0.02607 * 5 4 3 22 22 C 1.32487 * 120.75516 * 359.97438 * 21 5 4 23 23 S 1.76205 * 119.15626 * 180.02562 * 22 21 5 24 24 C 1.81001 * 100.00063 * 179.97438 * 23 22 21 25 25 N 1.32544 * 121.69286 * 359.97438 * 22 21 5 26 26 H 1.08994 * 109.47053 * 59.99884 * 1 2 3 27 27 H 1.09008 * 109.46819 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47079 * 299.99885 * 1 2 3 29 29 H 1.08006 * 120.77132 * 0.04122 * 4 3 2 30 30 H 1.09000 * 109.47368 * 209.99605 * 7 6 5 31 31 H 1.09002 * 109.47556 * 329.99621 * 7 6 5 32 32 H 0.97001 * 119.99616 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.01757 * 178.61006 * 16 6 5 34 34 H 1.09004 * 110.48506 * 335.78274 * 17 16 6 35 35 H 1.08994 * 110.48334 * 98.42641 * 17 16 6 36 36 H 1.09007 * 110.75665 * 279.62260 * 18 17 16 37 37 H 1.09003 * 110.75709 * 156.25834 * 18 17 16 38 38 H 1.08997 * 110.49367 * 203.38172 * 19 18 17 39 39 H 1.08995 * 110.48961 * 80.73277 * 19 18 17 40 40 H 1.09002 * 110.03528 * 238.56419 * 20 16 6 41 41 H 1.09002 * 110.03831 * 0.02562 * 20 16 6 42 42 H 1.09002 * 109.46784 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.46849 * 299.99555 * 24 23 22 44 44 H 1.09000 * 109.47308 * 59.99860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4315 1.2905 0.0005 5 6 4.0209 2.5524 0.0000 6 7 5.4007 2.6831 -0.0001 7 6 6.2491 1.4938 -0.1097 8 6 6.5284 1.2082 -1.5628 9 1 6.1149 1.8483 -2.3281 10 6 7.3110 0.1291 -1.9152 11 7 7.5551 -0.1198 -3.1833 12 14 8.0256 -0.9784 -0.5915 13 1 7.0734 -2.0802 -0.3008 14 1 9.3126 -1.5484 -1.0648 15 1 8.2589 -0.1870 0.6432 16 6 6.0108 4.0105 0.1095 17 6 5.5264 4.7102 1.3962 18 6 5.3789 6.1968 0.9877 19 6 4.8218 6.1015 -0.4544 20 6 5.5628 4.8951 -1.0672 21 7 3.2414 3.6308 -0.0005 22 6 1.9218 3.5129 -0.0010 23 16 0.9298 4.9692 -0.0024 24 6 -0.7204 4.2255 -0.0034 25 7 1.3285 2.3276 -0.0015 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0384 0.3971 0.0003 30 1 7.1893 1.6687 0.4134 31 1 5.7383 0.6406 0.3367 32 1 8.1060 -0.8788 -3.4312 33 1 7.0971 3.9223 0.1179 34 1 4.5654 4.3043 1.7124 35 1 6.2661 4.6040 2.1897 36 1 6.3472 6.6975 0.9955 37 1 4.6729 6.7089 1.6414 38 1 5.0474 7.0108 -1.0115 39 1 3.7472 5.9204 -0.4370 40 1 6.4319 5.2370 -1.6293 41 1 4.8912 4.3370 -1.7195 42 1 -1.4738 5.0132 -0.0038 43 1 -0.8398 3.6075 -0.8933 44 1 -0.8412 3.6080 0.8867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:37 Heat of formation + Delta-G solvation = 20.106184 kcal Electronic energy + Delta-G solvation = -26362.646562 eV Core-core repulsion = 22828.043709 eV Total energy + Delta-G solvation = -3534.602853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66879 -38.76731 -37.50968 -35.18065 -32.81351 -31.92110 -30.84008 -28.84715 -28.57576 -28.21186 -27.41598 -26.02256 -24.15229 -22.98439 -21.39991 -20.33303 -19.82348 -18.09716 -17.42472 -16.97178 -16.44537 -15.90940 -15.84817 -15.12325 -14.68686 -14.56016 -14.41723 -14.17936 -14.08907 -13.86658 -13.42803 -13.21447 -12.79538 -12.63429 -12.53763 -12.17428 -11.96393 -11.90470 -11.43629 -11.33994 -10.89976 -10.75689 -10.65399 -10.59114 -10.57281 -10.49168 -10.24894 -10.12254 -9.99927 -9.82463 -9.52801 -9.07437 -8.84596 -8.71189 -7.65186 -7.12085 -6.20170 -4.21602 1.44494 1.45987 1.91247 2.24970 3.16353 3.19539 3.25492 3.27758 3.67965 4.26494 4.27290 4.70652 5.05784 5.08364 5.12154 5.13549 5.19571 5.23310 5.31729 5.34863 5.40588 5.57862 5.74128 5.78991 5.83831 5.87814 5.93720 6.00064 6.04621 6.13693 6.22369 6.31555 6.41898 6.49468 6.57706 6.62284 6.67250 6.84836 6.92617 7.15340 7.41875 7.49322 7.84623 8.00927 8.34775 8.57681 8.86759 9.38099 10.92649 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010942 B = 0.005607 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.365251 B = 4992.332709 C = 6887.145188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.301 6.301 3 C 0.386 3.614 4 C -0.304 4.304 5 C 0.481 3.519 6 N -0.558 5.558 7 C 0.218 3.782 8 C -0.537 4.537 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.890 5.890 12 Si 0.870 3.130 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.265 1.265 16 C 0.158 3.842 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.118 4.118 21 N -0.562 5.562 22 C 0.362 3.638 23 S -0.013 6.013 24 C -0.139 4.139 25 N -0.629 5.629 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.151 0.849 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 8.369 8.893 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.207 6.207 3 C 0.202 3.798 4 C -0.335 4.335 5 C 0.237 3.763 6 N -0.264 5.264 7 C 0.097 3.903 8 C -0.576 4.576 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.528 5.528 12 Si 0.697 3.303 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.189 1.189 16 C 0.054 3.946 17 C -0.167 4.167 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.157 4.157 21 N -0.294 5.294 22 C -0.018 4.018 23 S 0.219 5.781 24 C -0.309 4.309 25 N -0.369 5.369 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.169 0.831 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.435 9.853 8.757 18.122 hybrid contribution 0.474 -2.947 0.360 3.007 sum -11.962 6.906 9.117 16.550 Atomic orbital electron populations 1.22796 0.77808 1.02568 1.02082 1.86250 1.22400 1.24538 1.87487 1.19463 0.88819 0.83911 0.87610 1.21058 0.92412 0.99675 1.20395 1.18044 0.85849 0.87396 0.85040 1.47001 1.00136 1.08097 1.71189 1.19910 0.89427 0.82447 0.98494 1.21353 1.32342 1.13252 0.90625 0.90352 1.24851 0.95586 0.96970 0.95250 1.69890 1.38062 1.28994 1.15839 0.86947 0.79326 0.81650 0.82426 1.19772 1.20828 1.18922 1.21623 0.96999 0.81481 0.94496 1.22728 1.01585 0.95664 0.96763 1.22330 0.99939 0.95775 0.97177 1.22280 1.01504 0.96533 0.94732 1.22340 0.99605 0.96280 0.97430 1.68225 1.03199 1.31316 1.26636 1.23931 0.90797 0.94063 0.92967 1.85580 0.97981 1.02894 1.91680 1.23455 0.95892 1.04704 1.06842 1.68193 1.40351 0.97831 1.30526 0.92489 0.88926 0.92636 0.83090 0.94437 0.95017 0.92374 0.89353 0.90501 0.92608 0.92354 0.92161 0.93193 0.90095 0.92418 0.91157 0.88292 0.89468 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.41 101.05 1.05 1.57 16 2 O -0.30 -5.09 10.49 -18.32 -0.19 -5.28 16 3 C 0.39 7.18 7.52 -16.82 -0.13 7.06 16 4 C -0.30 -6.23 9.27 -38.93 -0.36 -6.59 16 5 C 0.48 9.76 6.20 -154.79 -0.96 8.80 16 6 N -0.56 -11.41 2.49 -166.24 -0.41 -11.83 16 7 C 0.22 4.93 4.07 -5.19 -0.02 4.91 16 8 C -0.54 -14.48 9.94 -34.44 -0.34 -14.82 16 9 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 10 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 12 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 16 C 0.16 2.82 3.36 -66.81 -0.22 2.60 16 17 C -0.13 -1.98 6.06 -25.08 -0.15 -2.13 16 18 C -0.11 -1.53 6.91 -24.74 -0.17 -1.70 16 19 C -0.11 -1.67 6.36 -25.07 -0.16 -1.83 16 20 C -0.12 -2.06 5.75 -25.61 -0.15 -2.21 16 21 N -0.56 -10.40 5.19 -12.73 -0.07 -10.46 16 22 C 0.36 6.20 7.85 -90.91 -0.71 5.49 16 23 S -0.01 -0.17 22.89 -107.50 -2.46 -2.63 16 24 C -0.14 -1.37 9.61 101.05 0.97 -0.40 16 25 N -0.63 -10.77 8.06 -13.58 -0.11 -10.87 16 26 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.15 3.22 6.14 -52.48 -0.32 2.90 16 30 H 0.04 0.83 6.98 -51.93 -0.36 0.47 16 31 H 0.03 0.71 5.47 -51.93 -0.28 0.43 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.57 7.82 -51.93 -0.41 1.16 16 34 H 0.08 1.31 6.13 -51.93 -0.32 0.99 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.28 6.92 -51.93 -0.36 0.92 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.44 7.03 -51.93 -0.36 1.08 16 42 H 0.10 0.71 8.14 -51.91 -0.42 0.29 16 43 H 0.09 0.91 8.11 -51.92 -0.42 0.49 16 44 H 0.09 0.86 8.11 -51.92 -0.42 0.44 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -29.79 362.39 -9.78 -39.57 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.65 Total: 3.38 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.45 Total: 2.75 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.18 Total: -58.77 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.19 Total: -5.28 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.46 Total: -2.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.79 -9.78 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.672 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds