Wall clock time and date at job start Tue Mar 31 2020 14:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35541 * 117.00200 * 2 1 4 4 C 1.38955 * 120.41873 * 179.97438 * 3 2 1 5 5 C 1.39274 * 118.45303 * 179.97438 * 4 3 2 6 6 N 1.38600 * 120.44954 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99781 * 4.98148 * 6 5 4 8 8 C 1.50707 * 109.47132 * 89.99912 * 7 6 5 9 9 H 1.07998 * 119.99654 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99786 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99640 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00502 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46990 * 90.00008 * 12 10 8 14 14 H 1.48494 * 109.47112 * 210.00284 * 12 10 8 15 15 H 1.48507 * 109.46814 * 330.00349 * 12 10 8 16 16 C 1.46500 * 120.00308 * 184.98105 * 6 5 4 17 17 C 1.54266 * 110.03208 * 57.16723 * 16 6 5 18 18 C 1.54883 * 104.19389 * 217.10938 * 17 16 6 19 19 C 1.54885 * 102.75475 * 37.94313 * 18 17 16 20 20 C 1.53873 * 110.02768 * 300.00052 * 16 6 5 21 21 N 1.33062 * 119.10380 * 0.02607 * 5 4 3 22 22 C 1.32487 * 120.75516 * 359.97438 * 21 5 4 23 23 S 1.76205 * 119.15626 * 180.02562 * 22 21 5 24 24 C 1.81001 * 100.00063 * 179.97438 * 23 22 21 25 25 N 1.32544 * 121.69286 * 359.97438 * 22 21 5 26 26 H 1.08994 * 109.47053 * 59.99884 * 1 2 3 27 27 H 1.09008 * 109.46819 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47079 * 299.99885 * 1 2 3 29 29 H 1.08006 * 120.77132 * 0.04122 * 4 3 2 30 30 H 1.09000 * 109.47368 * 209.99605 * 7 6 5 31 31 H 1.09002 * 109.47556 * 329.99621 * 7 6 5 32 32 H 0.97001 * 119.99616 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.01757 * 178.61006 * 16 6 5 34 34 H 1.09004 * 110.48506 * 335.78274 * 17 16 6 35 35 H 1.08994 * 110.48334 * 98.42641 * 17 16 6 36 36 H 1.09007 * 110.75665 * 279.62260 * 18 17 16 37 37 H 1.09003 * 110.75709 * 156.25834 * 18 17 16 38 38 H 1.08997 * 110.49367 * 203.38172 * 19 18 17 39 39 H 1.08995 * 110.48961 * 80.73277 * 19 18 17 40 40 H 1.09002 * 110.03528 * 238.56419 * 20 16 6 41 41 H 1.09002 * 110.03831 * 0.02562 * 20 16 6 42 42 H 1.09002 * 109.46784 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.46849 * 299.99555 * 24 23 22 44 44 H 1.09000 * 109.47308 * 59.99860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4315 1.2905 0.0005 5 6 4.0209 2.5524 0.0000 6 7 5.4007 2.6831 -0.0001 7 6 6.2491 1.4938 -0.1097 8 6 6.5284 1.2082 -1.5628 9 1 6.1149 1.8483 -2.3281 10 6 7.3110 0.1291 -1.9152 11 7 7.5551 -0.1198 -3.1833 12 14 8.0256 -0.9784 -0.5915 13 1 7.0734 -2.0802 -0.3008 14 1 9.3126 -1.5484 -1.0648 15 1 8.2589 -0.1870 0.6432 16 6 6.0108 4.0105 0.1095 17 6 5.5264 4.7102 1.3962 18 6 5.3789 6.1968 0.9877 19 6 4.8218 6.1015 -0.4544 20 6 5.5628 4.8951 -1.0672 21 7 3.2414 3.6308 -0.0005 22 6 1.9218 3.5129 -0.0010 23 16 0.9298 4.9692 -0.0024 24 6 -0.7204 4.2255 -0.0034 25 7 1.3285 2.3276 -0.0015 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0384 0.3971 0.0003 30 1 7.1893 1.6687 0.4134 31 1 5.7383 0.6406 0.3367 32 1 8.1060 -0.8788 -3.4312 33 1 7.0971 3.9223 0.1179 34 1 4.5654 4.3043 1.7124 35 1 6.2661 4.6040 2.1897 36 1 6.3472 6.6975 0.9955 37 1 4.6729 6.7089 1.6414 38 1 5.0474 7.0108 -1.0115 39 1 3.7472 5.9204 -0.4370 40 1 6.4319 5.2370 -1.6293 41 1 4.8912 4.3370 -1.7195 42 1 -1.4738 5.0132 -0.0038 43 1 -0.8398 3.6075 -0.8933 44 1 -0.8412 3.6080 0.8867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:37 Heat of formation + Delta-G solvation = 3.141840 kcal Electronic energy + Delta-G solvation = -26363.382191 eV Core-core repulsion = 22828.043709 eV Total energy + Delta-G solvation = -3535.338482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07596 -40.12834 -38.83076 -36.68280 -34.74368 -33.45982 -32.24857 -30.31405 -29.70150 -29.48742 -28.58963 -27.43709 -25.66063 -24.56246 -23.04202 -21.53797 -21.16763 -19.47935 -19.10018 -18.75772 -17.71311 -17.31455 -17.19230 -16.50109 -16.37748 -15.98715 -15.80447 -15.45427 -15.30956 -15.19067 -14.61880 -14.55110 -14.33871 -14.01314 -13.77215 -13.70944 -13.38920 -13.00166 -12.92086 -12.57971 -12.48624 -12.35011 -11.99545 -11.90037 -11.83777 -11.77914 -11.74255 -11.60345 -11.56477 -11.33150 -11.13052 -10.83114 -10.40856 -10.24748 -8.89453 -8.58674 -8.34270 -6.41557 0.02127 0.27488 0.44518 1.27595 1.34994 1.36055 1.45611 1.84582 2.23022 2.29542 2.81698 2.99034 3.36973 3.78070 3.85265 3.87181 4.09201 4.24685 4.34491 4.37628 4.42823 4.43959 4.46566 4.53426 4.56408 4.65738 4.68625 4.73256 4.80118 4.84525 4.89258 4.98117 5.01771 5.10313 5.18474 5.26416 5.36461 5.41282 5.44030 5.70150 5.72628 6.05908 6.19216 6.44656 6.47769 6.62806 7.09452 7.24446 8.82454 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010942 B = 0.005607 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.365251 B = 4992.332709 C = 6887.145188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.389 3.611 4 C -0.340 4.340 5 C 0.471 3.529 6 N -0.568 5.568 7 C 0.228 3.772 8 C -0.536 4.536 9 H 0.025 0.975 10 C 0.018 3.982 11 N -0.943 5.943 12 Si 0.943 3.057 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.238 1.238 16 C 0.149 3.851 17 C -0.119 4.119 18 C -0.103 4.103 19 C -0.106 4.106 20 C -0.115 4.115 21 N -0.563 5.563 22 C 0.344 3.656 23 S 0.007 5.993 24 C -0.134 4.134 25 N -0.618 5.618 26 H 0.058 0.942 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.269 0.731 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.030 0.970 42 H 0.134 0.866 43 H 0.083 0.917 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 9.499 11.363 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.221 6.221 3 C 0.204 3.796 4 C -0.371 4.371 5 C 0.227 3.773 6 N -0.275 5.275 7 C 0.106 3.894 8 C -0.575 4.575 9 H 0.043 0.957 10 C -0.181 4.181 11 N -0.583 5.583 12 Si 0.765 3.235 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.161 1.161 16 C 0.046 3.954 17 C -0.158 4.158 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.154 4.154 21 N -0.294 5.294 22 C -0.034 4.034 23 S 0.238 5.762 24 C -0.303 4.303 25 N -0.358 5.358 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.152 0.848 43 H 0.102 0.898 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.846 11.020 11.245 20.966 hybrid contribution 0.662 -3.228 -0.527 3.337 sum -13.183 7.792 10.718 18.692 Atomic orbital electron populations 1.23148 0.75132 1.04878 1.02638 1.86238 1.25100 1.23758 1.86985 1.19543 0.88528 0.84957 0.86592 1.21056 0.93542 0.99245 1.23293 1.18199 0.85999 0.87984 0.85147 1.46939 1.00327 1.08266 1.71945 1.19637 0.90432 0.83877 0.95428 1.21484 1.31685 1.12361 0.91980 0.95698 1.25803 0.95956 0.98623 0.97698 1.70058 1.39549 1.30130 1.18543 0.85788 0.78276 0.79455 0.79969 1.19175 1.20555 1.16067 1.21868 0.96850 0.80654 0.96057 1.22642 1.00974 0.96561 0.95621 1.22311 1.01298 0.94505 0.95988 1.22221 1.00513 0.95698 0.95911 1.22288 0.99029 0.97128 0.96978 1.68331 1.03767 1.30366 1.26963 1.24924 0.91092 0.95679 0.91670 1.85544 0.99219 1.00844 1.90560 1.23602 0.94235 1.05747 1.06765 1.68328 1.39549 0.97467 1.30461 0.92332 0.85834 0.91579 0.84935 0.93052 0.94512 0.92243 0.89622 0.92126 0.90990 0.90459 0.90452 0.91396 0.91087 0.92516 0.95085 0.84789 0.89835 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.41 113.37 1.18 1.99 16 2 O -0.32 -10.60 10.49 -88.46 -0.93 -11.53 16 3 C 0.39 14.70 7.52 84.70 0.64 15.33 16 4 C -0.34 -14.52 9.27 22.69 0.21 -14.31 16 5 C 0.47 19.80 6.20 133.04 0.82 20.62 16 6 N -0.57 -24.02 2.49 -679.86 -1.69 -25.72 16 7 C 0.23 10.57 4.07 85.64 0.35 10.92 16 8 C -0.54 -30.40 9.94 25.60 0.25 -30.15 16 9 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 10 C 0.02 1.01 5.47 84.65 0.46 1.48 16 11 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 12 Si 0.94 42.07 27.47 68.60 1.88 43.96 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 16 C 0.15 5.37 3.36 45.72 0.15 5.53 16 17 C -0.12 -3.51 6.06 31.67 0.19 -3.32 16 18 C -0.10 -2.50 6.91 31.88 0.22 -2.28 16 19 C -0.11 -3.00 6.36 31.67 0.20 -2.80 16 20 C -0.12 -4.14 5.75 31.32 0.18 -3.96 16 21 N -0.56 -21.12 5.19 -194.19 -1.01 -22.13 16 22 C 0.34 11.66 7.85 180.45 1.42 13.08 16 23 S 0.01 0.16 22.89 -56.49 -1.29 -1.13 16 24 C -0.13 -2.25 9.61 113.37 1.09 -1.16 16 25 N -0.62 -20.87 8.06 -309.48 -2.50 -23.36 16 26 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 27 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 29 H 0.13 6.01 6.14 -2.91 -0.02 5.99 16 30 H 0.05 2.24 6.98 -2.39 -0.02 2.22 16 31 H 0.04 1.68 5.47 -2.39 -0.01 1.67 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.09 3.07 7.82 -2.39 -0.02 3.05 16 34 H 0.06 2.01 6.13 -2.38 -0.01 1.99 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 2.17 6.92 -2.39 -0.02 2.16 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 1.34 7.03 -2.39 -0.02 1.32 16 42 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.53 8.11 -2.39 -0.02 1.51 16 44 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 Total: -1.00 -69.19 362.39 3.08 -66.11 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.94 Total: 20.92 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 7.37 Total: 10.96 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -4.90 Total: -129.28 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.93 Total: -11.53 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.96 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.29 Total: -1.13 kcal Total: -69.19 3.08 -66.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.251 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds