Wall clock time and date at job start Tue Mar 31 2020 14:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36085 * 117.00156 * 2 1 4 4 C 1.38535 * 119.99901 * 359.72814 * 3 2 1 5 5 C 1.38214 * 120.06868 * 179.72892 * 4 3 2 6 6 C 1.50696 * 119.96159 * 180.27523 * 5 4 3 7 7 C 1.50699 * 109.47274 * 265.26785 * 6 5 4 8 8 H 1.07997 * 119.99624 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00505 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00039 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99550 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47248 * 90.00188 * 11 9 7 13 13 H 1.48501 * 109.46700 * 210.00033 * 11 9 7 14 14 H 1.48501 * 109.47349 * 329.99812 * 11 9 7 15 15 C 1.38858 * 120.07327 * 0.54457 * 5 4 3 16 16 N 1.39918 * 120.00615 * 179.75223 * 15 5 4 17 17 C 1.46496 * 120.00461 * 181.94686 * 16 15 5 18 18 C 1.53002 * 113.00081 * 289.08166 * 17 16 15 19 19 O 1.42894 * 109.47093 * 300.35741 * 18 17 16 20 20 C 1.54038 * 113.81758 * 157.09527 * 17 16 15 21 21 O 1.44181 * 85.51561 * 268.35202 * 20 17 16 22 22 C 1.44169 * 93.34316 * 335.80904 * 21 20 17 23 23 C 1.38834 * 119.99819 * 359.72926 * 15 5 4 24 24 C 1.38525 * 119.92446 * 359.97438 * 23 15 5 25 25 O 1.35986 * 120.03276 * 180.02562 * 24 23 15 26 26 C 1.42901 * 117.00142 * 354.64144 * 25 24 23 27 27 H 1.09003 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47301 * 59.99613 * 1 2 3 29 29 H 1.09008 * 109.46762 * 299.99815 * 1 2 3 30 30 H 1.07997 * 119.96279 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.47511 * 25.27240 * 6 5 4 32 32 H 1.09001 * 109.47402 * 145.26953 * 6 5 4 33 33 H 0.97002 * 120.00060 * 180.02562 * 10 9 7 34 34 H 0.97001 * 119.99674 * 1.94541 * 16 15 5 35 35 H 1.09006 * 109.46687 * 60.35707 * 18 17 16 36 36 H 1.08997 * 109.47127 * 180.35156 * 18 17 16 37 37 H 0.96699 * 113.99929 * 184.99895 * 19 18 17 38 38 H 1.09000 * 113.86372 * 22.50140 * 20 17 16 39 39 H 1.09005 * 113.86069 * 154.20988 * 20 17 16 40 40 H 1.09000 * 113.86220 * 270.04471 * 22 21 20 41 41 H 1.08991 * 113.86853 * 138.34023 * 22 21 20 42 42 H 1.08001 * 120.03719 * 179.97438 * 23 15 5 43 43 H 1.09003 * 109.47011 * 304.90550 * 26 25 24 44 44 H 1.09003 * 109.47443 * 64.90208 * 26 25 24 45 45 H 1.08997 * 109.47122 * 184.90984 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.2923 2.3744 -0.0057 5 6 1.9183 3.6066 0.0000 6 6 1.0952 4.8689 0.0000 7 6 0.9245 5.3574 -1.4153 8 1 1.3674 4.8084 -2.2331 9 6 0.2029 6.5052 -1.6663 10 7 0.0536 6.9311 -2.9015 11 14 -0.5626 7.4551 -0.2517 12 1 0.4033 8.4681 0.2444 13 1 -1.7957 8.1357 -0.7224 14 1 -0.9040 6.5167 0.8474 15 6 3.3048 3.6827 -0.0001 16 7 3.9370 4.9309 0.0004 17 6 5.3991 5.0116 -0.0427 18 6 6.0613 4.5638 1.2619 19 8 5.6059 5.3900 2.3352 20 6 5.9325 6.3504 -0.5866 21 8 5.9226 5.7016 -1.8741 22 6 6.0199 4.3812 -1.3037 23 6 4.0638 2.5203 -0.0001 24 6 3.4363 1.2853 0.0004 25 8 4.1776 0.1452 0.0009 26 6 5.5941 0.2923 -0.1180 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 0.2139 2.3172 -0.0105 31 1 0.1166 4.6646 0.4344 32 1 1.6018 5.6331 0.5895 33 1 -0.4537 7.7388 -3.0780 34 1 3.4072 5.7429 0.0293 35 1 5.7980 3.5258 1.4654 36 1 7.1437 4.6525 1.1690 37 1 6.0419 5.2131 3.1800 38 1 5.2238 7.1743 -0.5024 39 1 6.9301 6.6055 -0.2290 40 1 7.0441 4.0351 -1.1651 41 1 5.3806 3.6433 -1.7881 42 1 5.1422 2.5787 -0.0005 43 1 5.8254 0.8706 -1.0126 44 1 5.9806 0.8105 0.7596 45 1 6.0566 -0.6919 -0.1920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168180089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:21 Heat of formation + Delta-G solvation = -89.924640 kcal Electronic energy + Delta-G solvation = -29124.378121 eV Core-core repulsion = 25109.958351 eV Total energy + Delta-G solvation = -4014.419770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98651 -39.87824 -37.98521 -37.30295 -36.59319 -33.68524 -33.08659 -31.16484 -29.85422 -28.60024 -27.99968 -26.95742 -26.52895 -25.69499 -24.92232 -22.74800 -21.70500 -20.33714 -19.50070 -18.10610 -17.47639 -16.93630 -16.78369 -16.72172 -16.02229 -15.72504 -15.67355 -15.58373 -15.04242 -14.89370 -14.59064 -14.35638 -14.18600 -13.86731 -13.73334 -12.79425 -12.76376 -12.62815 -12.38410 -12.29466 -12.03399 -11.73991 -11.58385 -11.48184 -11.16944 -11.12338 -10.96238 -10.82926 -10.68690 -10.45519 -10.05187 -10.03515 -9.91185 -9.70809 -9.33238 -8.77528 -8.57645 -7.85264 -6.41552 -6.05581 -4.04657 1.90994 2.20019 3.26716 3.35698 3.38310 3.51655 3.62205 3.65869 3.78429 3.89158 4.33813 4.40951 4.53036 4.95479 5.05709 5.12309 5.14645 5.17973 5.22448 5.24399 5.29017 5.39706 5.44257 5.50739 5.54105 5.61828 5.67149 5.74120 5.75430 5.88575 5.90438 5.95762 6.08883 6.17754 6.40944 6.67550 6.87972 6.96282 7.12110 7.35106 7.50615 7.52581 7.68925 7.79001 8.12758 8.26615 8.52539 9.02347 9.54391 11.07112 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008422 B = 0.006567 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.869817 B = 4262.576043 C = 6529.214349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.039 3.961 4 C -0.125 4.125 5 C -0.092 4.092 6 C 0.027 3.973 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.070 3.930 10 N -0.897 5.897 11 Si 0.872 3.128 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.265 1.265 15 C 0.227 3.773 16 N -0.702 5.702 17 C 0.122 3.878 18 C 0.061 3.939 19 O -0.557 6.557 20 C 0.044 3.956 21 O -0.363 6.363 22 C 0.026 3.974 23 C -0.258 4.258 24 C 0.117 3.883 25 O -0.310 6.310 26 C 0.030 3.970 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.132 0.868 31 H 0.027 0.973 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.416 0.584 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.375 0.625 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.958 -8.855 9.661 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C -0.006 4.006 4 C -0.144 4.144 5 C -0.096 4.096 6 C -0.011 4.011 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.700 3.300 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.190 1.190 15 C 0.125 3.875 16 N -0.335 5.335 17 C 0.031 3.969 18 C -0.018 4.018 19 O -0.362 6.362 20 C -0.034 4.034 21 O -0.281 6.281 22 C -0.052 4.052 23 C -0.282 4.282 24 C 0.072 3.928 25 O -0.224 6.224 26 C -0.065 4.065 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.150 0.850 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.221 0.779 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.657 -8.754 8.800 17.728 hybrid contribution -0.253 0.943 1.155 1.512 sum 12.404 -7.811 9.955 17.720 Atomic orbital electron populations 1.22924 0.79603 1.02794 1.01256 1.86064 1.20133 1.26413 1.90508 1.17913 0.88732 0.84839 1.09157 1.20738 0.99558 0.90321 1.03794 1.19479 0.91347 0.96076 1.02745 1.18575 0.94220 0.89963 0.98314 1.20953 1.33463 1.09329 0.90949 0.90758 1.24991 0.95804 0.97066 0.95261 1.69902 1.41187 1.23565 1.18876 0.86897 0.79313 0.80532 0.83305 1.20251 1.21312 1.18982 1.17154 0.90835 0.84636 0.94873 1.44083 1.01820 1.06200 1.81384 1.23012 0.84321 0.96800 0.92730 1.22795 0.96469 0.94721 0.87863 1.86563 1.67344 1.62061 1.20194 1.24143 1.00902 0.95907 0.82409 1.89807 1.94985 1.17633 1.25677 1.24472 1.00095 0.88606 0.92059 1.20381 0.98923 0.90292 1.18571 1.17716 0.87790 0.84920 1.02420 1.86125 1.18207 1.28955 1.89098 1.22929 0.80067 1.02988 1.00557 0.89163 0.92813 0.93252 0.85035 0.95514 0.96481 0.92696 0.74378 0.92691 0.93043 0.77916 0.88246 0.89268 0.89854 0.87862 0.85628 0.93078 0.93535 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.61 10.28 -34.62 -0.36 -5.97 16 3 C 0.04 0.75 6.70 -39.14 -0.26 0.48 16 4 C -0.12 -2.46 8.66 -39.48 -0.34 -2.80 16 5 C -0.09 -1.96 5.09 -104.40 -0.53 -2.49 16 6 C 0.03 0.62 3.62 -29.04 -0.11 0.52 16 7 C -0.51 -14.13 9.65 -34.44 -0.33 -14.46 16 8 H 0.07 2.31 7.98 -52.49 -0.42 1.90 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 11 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 15 C 0.23 4.36 6.33 -83.72 -0.53 3.83 16 16 N -0.70 -12.68 5.27 -52.08 -0.27 -12.96 16 17 C 0.12 1.72 0.73 -130.74 -0.10 1.62 16 18 C 0.06 0.68 6.18 37.16 0.23 0.91 16 19 O -0.56 -6.60 13.60 -35.23 -0.48 -7.08 16 20 C 0.04 0.60 8.54 37.61 0.32 0.92 16 21 O -0.36 -6.05 12.45 -35.23 -0.44 -6.49 16 22 C 0.03 0.35 7.14 37.61 0.27 0.62 16 23 C -0.26 -4.33 6.36 -39.26 -0.25 -4.58 16 24 C 0.12 2.09 6.69 -39.14 -0.26 1.83 16 25 O -0.31 -5.02 10.28 -34.31 -0.35 -5.37 16 26 C 0.03 0.33 9.82 101.05 0.99 1.32 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.73 7.65 -51.93 -0.40 0.34 16 29 H 0.05 0.62 7.67 -51.92 -0.40 0.23 16 30 H 0.13 2.43 6.29 -52.49 -0.33 2.10 16 31 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 32 H 0.02 0.40 6.20 -51.93 -0.32 0.07 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.42 8.34 6.79 -40.82 -0.28 8.06 16 35 H 0.05 0.62 6.05 -51.93 -0.31 0.31 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.37 2.62 9.12 45.56 0.42 3.03 16 38 H 0.10 1.45 8.11 -51.93 -0.42 1.03 16 39 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.10 1.57 6.70 -51.93 -0.35 1.22 16 42 H 0.13 1.73 2.85 -52.49 -0.15 1.58 16 43 H 0.05 0.52 7.62 -51.93 -0.40 0.13 16 44 H 0.05 0.44 7.72 -51.93 -0.40 0.04 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -35.00 361.64 -5.75 -40.76 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.40 Total: 10.70 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 0.00 Total: -8.98 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.50 Total: -39.50 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.63 Total: -24.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.00 -5.75 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168180089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.169 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds