Wall clock time and date at job start Tue Mar 31 2020 14:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36085 * 117.00156 * 2 1 4 4 C 1.38535 * 119.99901 * 359.72814 * 3 2 1 5 5 C 1.38214 * 120.06868 * 179.72892 * 4 3 2 6 6 C 1.50696 * 119.96159 * 180.27523 * 5 4 3 7 7 C 1.50699 * 109.47274 * 265.26785 * 6 5 4 8 8 H 1.07997 * 119.99624 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00505 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00039 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99550 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47248 * 90.00188 * 11 9 7 13 13 H 1.48501 * 109.46700 * 210.00033 * 11 9 7 14 14 H 1.48501 * 109.47349 * 329.99812 * 11 9 7 15 15 C 1.38858 * 120.07327 * 0.54457 * 5 4 3 16 16 N 1.39918 * 120.00615 * 179.75223 * 15 5 4 17 17 C 1.46496 * 120.00461 * 181.94686 * 16 15 5 18 18 C 1.53002 * 113.00081 * 289.08166 * 17 16 15 19 19 O 1.42894 * 109.47093 * 300.35741 * 18 17 16 20 20 C 1.54038 * 113.81758 * 157.09527 * 17 16 15 21 21 O 1.44181 * 85.51561 * 268.35202 * 20 17 16 22 22 C 1.44169 * 93.34316 * 335.80904 * 21 20 17 23 23 C 1.38834 * 119.99819 * 359.72926 * 15 5 4 24 24 C 1.38525 * 119.92446 * 359.97438 * 23 15 5 25 25 O 1.35986 * 120.03276 * 180.02562 * 24 23 15 26 26 C 1.42901 * 117.00142 * 354.64144 * 25 24 23 27 27 H 1.09003 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47301 * 59.99613 * 1 2 3 29 29 H 1.09008 * 109.46762 * 299.99815 * 1 2 3 30 30 H 1.07997 * 119.96279 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.47511 * 25.27240 * 6 5 4 32 32 H 1.09001 * 109.47402 * 145.26953 * 6 5 4 33 33 H 0.97002 * 120.00060 * 180.02562 * 10 9 7 34 34 H 0.97001 * 119.99674 * 1.94541 * 16 15 5 35 35 H 1.09006 * 109.46687 * 60.35707 * 18 17 16 36 36 H 1.08997 * 109.47127 * 180.35156 * 18 17 16 37 37 H 0.96699 * 113.99929 * 184.99895 * 19 18 17 38 38 H 1.09000 * 113.86372 * 22.50140 * 20 17 16 39 39 H 1.09005 * 113.86069 * 154.20988 * 20 17 16 40 40 H 1.09000 * 113.86220 * 270.04471 * 22 21 20 41 41 H 1.08991 * 113.86853 * 138.34023 * 22 21 20 42 42 H 1.08001 * 120.03719 * 179.97438 * 23 15 5 43 43 H 1.09003 * 109.47011 * 304.90550 * 26 25 24 44 44 H 1.09003 * 109.47443 * 64.90208 * 26 25 24 45 45 H 1.08997 * 109.47122 * 184.90984 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.2923 2.3744 -0.0057 5 6 1.9183 3.6066 0.0000 6 6 1.0952 4.8689 0.0000 7 6 0.9245 5.3574 -1.4153 8 1 1.3674 4.8084 -2.2331 9 6 0.2029 6.5052 -1.6663 10 7 0.0536 6.9311 -2.9015 11 14 -0.5626 7.4551 -0.2517 12 1 0.4033 8.4681 0.2444 13 1 -1.7957 8.1357 -0.7224 14 1 -0.9040 6.5167 0.8474 15 6 3.3048 3.6827 -0.0001 16 7 3.9370 4.9309 0.0004 17 6 5.3991 5.0116 -0.0427 18 6 6.0613 4.5638 1.2619 19 8 5.6059 5.3900 2.3352 20 6 5.9325 6.3504 -0.5866 21 8 5.9226 5.7016 -1.8741 22 6 6.0199 4.3812 -1.3037 23 6 4.0638 2.5203 -0.0001 24 6 3.4363 1.2853 0.0004 25 8 4.1776 0.1452 0.0009 26 6 5.5941 0.2923 -0.1180 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 0.2139 2.3172 -0.0105 31 1 0.1166 4.6646 0.4344 32 1 1.6018 5.6331 0.5895 33 1 -0.4537 7.7388 -3.0780 34 1 3.4072 5.7429 0.0293 35 1 5.7980 3.5258 1.4654 36 1 7.1437 4.6525 1.1690 37 1 6.0419 5.2131 3.1800 38 1 5.2238 7.1743 -0.5024 39 1 6.9301 6.6055 -0.2290 40 1 7.0441 4.0351 -1.1651 41 1 5.3806 3.6433 -1.7881 42 1 5.1422 2.5787 -0.0005 43 1 5.8254 0.8706 -1.0126 44 1 5.9806 0.8105 0.7596 45 1 6.0566 -0.6919 -0.1920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168180089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:20 Heat of formation + Delta-G solvation = -119.238245 kcal Electronic energy + Delta-G solvation = -29125.649254 eV Core-core repulsion = 25109.958351 eV Total energy + Delta-G solvation = -4015.690903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14951 -41.15619 -39.22509 -38.65478 -37.48707 -35.22968 -34.84419 -32.91373 -31.04655 -29.77202 -29.61812 -27.99467 -27.58533 -27.09564 -25.90119 -24.54102 -23.01934 -21.88695 -20.64306 -19.35024 -18.94831 -18.38922 -18.21570 -17.97581 -17.11863 -16.91866 -16.87209 -16.72364 -16.36145 -16.20180 -16.02290 -15.55738 -15.36758 -15.28366 -14.94964 -14.55311 -14.16789 -13.95260 -13.74168 -13.48905 -13.28442 -13.21442 -12.90965 -12.73573 -12.59661 -12.44997 -12.23281 -12.04976 -11.98153 -11.90579 -11.75567 -11.54836 -11.46822 -10.87263 -10.81874 -10.77543 -10.11970 -9.23888 -8.27748 -7.82268 -6.31330 0.47203 0.75907 1.33885 1.35943 1.47550 2.30807 2.34312 2.49055 2.55395 2.64113 2.82315 2.92687 3.06416 3.58900 3.87924 4.09034 4.15920 4.18721 4.20557 4.25201 4.38977 4.41806 4.43713 4.45659 4.49506 4.50521 4.53913 4.58662 4.66379 4.76185 4.76566 4.77859 4.87347 4.94580 5.05624 5.13532 5.15489 5.31269 5.56072 5.66892 5.79203 6.24515 6.29503 6.47310 6.72580 6.76285 6.82978 6.95612 7.31368 8.89241 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008422 B = 0.006567 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.869817 B = 4262.576043 C = 6529.214349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C 0.023 3.977 4 C -0.130 4.130 5 C -0.136 4.136 6 C 0.040 3.960 7 C -0.504 4.504 8 H 0.022 0.978 9 C 0.011 3.989 10 N -0.948 5.948 11 Si 0.944 3.056 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.248 1.248 15 C 0.222 3.778 16 N -0.713 5.713 17 C 0.109 3.891 18 C 0.069 3.931 19 O -0.582 6.582 20 C 0.044 3.956 21 O -0.405 6.405 22 C 0.028 3.972 23 C -0.247 4.247 24 C 0.122 3.878 25 O -0.325 6.325 26 C 0.016 3.984 27 H 0.122 0.878 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.159 0.841 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.330 -9.785 12.053 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C -0.023 4.023 4 C -0.150 4.150 5 C -0.140 4.140 6 C 0.002 3.998 7 C -0.542 4.542 8 H 0.041 0.959 9 C -0.186 4.186 10 N -0.589 5.589 11 Si 0.768 3.232 12 H -0.190 1.190 13 H -0.211 1.211 14 H -0.172 1.172 15 C 0.119 3.881 16 N -0.343 5.343 17 C 0.020 3.980 18 C -0.011 4.011 19 O -0.389 6.389 20 C -0.032 4.032 21 O -0.324 6.324 22 C -0.049 4.049 23 C -0.271 4.271 24 C 0.076 3.924 25 O -0.239 6.239 26 C -0.078 4.078 27 H 0.141 0.859 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.245 0.755 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.176 0.824 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.075 -9.717 11.223 21.157 hybrid contribution -0.871 1.108 0.333 1.448 sum 14.204 -8.609 11.556 20.234 Atomic orbital electron populations 1.23183 0.77766 1.04944 1.01272 1.86039 1.22103 1.25805 1.90483 1.18077 0.89623 0.84923 1.09710 1.20770 0.99866 0.90465 1.03875 1.19406 0.92506 0.95433 1.06681 1.18330 0.94734 0.91436 0.95270 1.21059 1.32432 1.08760 0.91957 0.95921 1.25905 0.96430 0.98209 0.98083 1.70069 1.42767 1.24494 1.21534 0.85749 0.78343 0.79207 0.79919 1.19037 1.21063 1.17156 1.17310 0.90423 0.85920 0.94477 1.44279 1.03761 1.05071 1.81208 1.23318 0.82150 0.97464 0.95030 1.22732 0.98274 0.94149 0.85905 1.86514 1.68425 1.62418 1.21586 1.24357 1.02579 0.95089 0.81204 1.89768 1.95423 1.19490 1.27716 1.24673 1.02310 0.87045 0.90874 1.20582 1.00303 0.88963 1.17203 1.17920 0.87905 0.85870 1.00752 1.86114 1.20907 1.28248 1.88664 1.23359 0.77240 1.05392 1.01851 0.85948 0.93554 0.92487 0.84920 0.95584 0.95936 0.92590 0.76236 0.92749 0.88722 0.75473 0.90305 0.85102 0.84833 0.90252 0.82409 0.92334 0.91478 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 16 2 O -0.33 -11.57 10.28 -80.55 -0.83 -12.40 16 3 C 0.02 0.86 6.70 22.56 0.15 1.01 16 4 C -0.13 -5.31 8.66 22.34 0.19 -5.12 16 5 C -0.14 -5.97 5.09 -19.72 -0.10 -6.07 16 6 C 0.04 1.92 3.62 29.10 0.11 2.03 16 7 C -0.50 -29.44 9.65 25.60 0.25 -29.20 16 8 H 0.02 1.51 7.98 -2.91 -0.02 1.49 16 9 C 0.01 0.63 5.47 84.66 0.46 1.09 16 10 N -0.95 -60.27 13.96 21.45 0.30 -59.98 16 11 Si 0.94 44.47 27.47 68.60 1.88 46.35 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 15 C 0.22 8.60 6.33 38.14 0.24 8.84 16 16 N -0.71 -25.94 5.27 -329.72 -1.74 -27.68 16 17 C 0.11 2.88 0.73 4.31 0.00 2.89 16 18 C 0.07 1.26 6.18 71.98 0.45 1.70 16 19 O -0.58 -12.03 13.60 -148.98 -2.03 -14.06 16 20 C 0.04 1.15 8.54 72.28 0.62 1.77 16 21 O -0.40 -13.29 12.45 -148.98 -1.86 -15.14 16 22 C 0.03 0.71 7.14 72.27 0.52 1.23 16 23 C -0.25 -8.02 6.36 22.48 0.14 -7.87 16 24 C 0.12 4.24 6.69 22.56 0.15 4.39 16 25 O -0.33 -9.86 10.28 -79.43 -0.82 -10.68 16 26 C 0.02 0.29 9.82 113.37 1.11 1.40 16 27 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.05 1.29 7.65 -2.39 -0.02 1.27 16 29 H 0.06 1.42 7.67 -2.38 -0.02 1.40 16 30 H 0.13 5.13 6.29 -2.91 -0.02 5.11 16 31 H 0.03 1.24 7.11 -2.39 -0.02 1.23 16 32 H 0.02 1.06 6.20 -2.39 -0.01 1.04 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.40 16.63 6.79 -92.71 -0.63 16.00 16 35 H 0.05 1.00 6.05 -2.38 -0.01 0.99 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.40 4.17 9.12 -74.06 -0.68 3.50 16 38 H 0.08 2.33 8.11 -2.39 -0.02 2.31 16 39 H 0.13 2.25 8.10 -2.38 -0.02 2.23 16 40 H 0.13 1.95 8.10 -2.39 -0.02 1.93 16 41 H 0.08 2.35 6.70 -2.39 -0.02 2.33 16 42 H 0.16 3.89 2.85 -2.91 -0.01 3.88 16 43 H 0.06 1.00 7.62 -2.39 -0.02 0.98 16 44 H 0.07 0.97 7.72 -2.39 -0.02 0.95 16 45 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -81.30 361.64 0.01 -81.29 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.31 Total: 32.46 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 5.40 Total: -20.18 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.44 Total: -87.65 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -5.53 Total: -52.28 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -81.30 0.01 -81.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168180089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.947 kcal (2) G-P(sol) polarization free energy of solvation -81.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds