Wall clock time and date at job start Tue Mar 31 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.80624 * 2 1 4 4 C 1.53311 * 109.64373 * 239.47670 * 2 1 3 5 5 C 1.53100 * 108.26571 * 170.45160 * 4 2 1 6 6 C 1.50460 * 110.37536 * 51.41845 * 5 4 2 7 7 N 1.33141 * 118.44811 * 161.81483 * 6 5 4 8 8 C 1.31702 * 121.27151 * 179.33385 * 7 6 5 9 9 Cl 1.73603 * 119.14204 * 179.97438 * 8 7 6 10 10 N 1.31909 * 121.71631 * 0.02562 * 8 7 6 11 11 C 1.32819 * 120.47391 * 0.15390 * 10 8 7 12 12 N 1.38533 * 120.42706 * 179.97438 * 11 10 8 13 13 C 1.46500 * 120.00332 * 359.97438 * 12 11 10 14 14 C 1.53006 * 109.46998 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47118 * 89.99310 * 20 18 16 22 22 H 1.48494 * 109.47201 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47011 * 329.99452 * 20 18 16 24 24 C 1.37269 * 122.60159 * 341.69664 * 6 5 4 25 25 C 1.50330 * 122.87640 * 1.05269 * 24 6 5 26 26 H 1.08993 * 109.47217 * 299.48254 * 1 2 3 27 27 H 1.09003 * 109.46812 * 59.48394 * 1 2 3 28 28 H 1.09003 * 109.46633 * 179.48156 * 1 2 3 29 29 H 1.08995 * 109.47212 * 180.52417 * 3 2 1 30 30 H 1.09004 * 109.46925 * 300.51727 * 3 2 1 31 31 H 1.08991 * 109.47365 * 60.51587 * 3 2 1 32 32 H 1.08997 * 109.62885 * 290.44206 * 4 2 1 33 33 H 1.09004 * 109.62867 * 50.82557 * 4 2 1 34 34 H 1.09001 * 109.86340 * 290.81728 * 5 4 2 35 35 H 1.09002 * 108.84614 * 171.37589 * 5 4 2 36 36 H 0.97010 * 119.99758 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47175 * 60.00031 * 13 12 11 38 38 H 1.09001 * 109.47297 * 299.99538 * 13 12 11 39 39 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 40 40 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 41 41 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 42 42 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 43 43 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.30751 * 102.65518 * 25 24 6 45 45 H 1.09000 * 109.30493 * 222.24831 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0485 1.4395 0.0000 4 6 2.0454 -0.7333 -1.2438 5 6 3.5570 -0.5103 -1.3404 6 6 4.2217 -0.8541 -0.0351 7 7 5.5344 -1.0765 -0.0311 8 6 6.1749 -1.3686 1.0820 9 17 7.8872 -1.6488 1.0235 10 7 5.5491 -1.4547 2.2400 11 6 4.2390 -1.2494 2.3146 12 7 3.5827 -1.3407 3.5312 13 6 4.3338 -1.6659 4.7462 14 6 3.3791 -1.7033 5.9413 15 6 4.1636 -2.0436 7.2100 16 6 3.2232 -2.0811 8.3871 17 1 2.1713 -1.8824 8.2444 18 6 3.7057 -2.3689 9.6462 19 7 4.9866 -2.6113 9.8199 20 14 2.5400 -2.4160 11.1051 21 1 2.0047 -3.7916 11.2667 22 1 3.2712 -2.0216 12.3359 23 1 1.4175 -1.4721 10.8723 24 6 3.5289 -0.9442 1.1465 25 6 2.0438 -0.7309 1.2400 26 1 -0.3633 0.5057 0.8945 27 1 -0.3633 0.5218 -0.8854 28 1 -0.3633 -1.0277 -0.0093 29 1 3.1384 1.4332 -0.0094 30 1 1.6806 1.9582 -0.8854 31 1 1.6957 1.9528 0.8945 32 1 1.8308 -1.7984 -1.1561 33 1 1.5577 -0.3336 -2.1329 34 1 3.7627 0.5315 -1.5861 35 1 3.9575 -1.1488 -2.1278 36 1 2.6255 -1.1899 3.5784 37 1 5.0976 -0.9069 4.9153 38 1 4.8090 -2.6400 4.6298 39 1 2.9043 -0.7292 6.0575 40 1 2.6151 -2.4621 5.7724 41 1 4.6381 -3.0179 7.0936 42 1 4.9278 -1.2851 7.3791 43 1 5.3262 -2.8141 10.7056 44 1 1.5454 -1.6968 1.3213 45 1 1.8203 -0.1346 2.1246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:59 Heat of formation + Delta-G solvation = -9.019645 kcal Electronic energy + Delta-G solvation = -24873.256217 eV Core-core repulsion = 21335.346667 eV Total energy + Delta-G solvation = -3537.909550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55150 -39.42158 -38.38701 -37.69691 -35.91169 -34.51572 -33.66980 -31.93996 -31.88807 -28.50327 -28.19300 -27.72520 -25.60057 -24.64520 -24.01118 -22.70709 -22.20311 -19.86814 -18.90681 -18.55328 -18.30713 -16.96774 -16.60046 -16.45819 -16.34173 -16.03291 -15.80862 -15.49461 -15.12771 -14.88806 -14.35698 -14.18753 -14.10222 -13.79963 -13.72238 -13.26656 -13.00600 -12.77863 -12.73293 -12.65895 -12.57698 -12.49974 -12.39057 -12.35156 -12.14863 -12.00402 -11.60813 -11.52199 -11.50260 -11.33337 -11.21798 -11.19564 -10.56589 -10.52921 -10.27878 -9.13563 -8.20576 -6.32192 -0.21115 0.18725 0.36234 1.40926 1.42133 1.53053 1.97663 2.41228 2.58648 3.03486 3.13308 3.42482 3.57147 3.72410 3.86073 3.91844 4.12747 4.18335 4.19271 4.30801 4.44941 4.47961 4.52897 4.63577 4.76693 4.87115 4.90089 4.92185 4.93613 5.00232 5.04209 5.10844 5.13573 5.16417 5.23655 5.26277 5.42969 5.49002 5.50645 5.57204 5.61844 5.68629 5.82657 5.89432 6.21417 6.48352 6.85105 7.01762 7.37538 8.91481 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.002960 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.170324 B = 9458.530503 C =11536.890089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.067 4.067 6 C 0.208 3.792 7 N -0.563 5.563 8 C 0.388 3.612 9 Cl 0.017 6.983 10 N -0.595 5.595 11 C 0.439 3.561 12 N -0.689 5.689 13 C 0.142 3.858 14 C -0.103 4.103 15 C 0.027 3.973 16 C -0.542 4.542 17 H 0.066 0.934 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.260 1.260 24 C -0.231 4.231 25 C -0.057 4.057 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.424 0.576 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.067 0.933 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 6.243 -26.404 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.104 4.104 6 C 0.070 3.930 7 N -0.287 5.287 8 C 0.092 3.908 9 Cl 0.045 6.955 10 N -0.324 5.324 11 C 0.193 3.807 12 N -0.323 5.323 13 C 0.018 3.982 14 C -0.141 4.141 15 C -0.011 4.011 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.184 1.184 24 C -0.241 4.241 25 C -0.095 4.095 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.627 5.984 -26.129 27.869 hybrid contribution -0.375 -0.154 1.520 1.574 sum -8.002 5.831 -24.608 26.525 Atomic orbital electron populations 1.21816 0.92433 1.02531 1.02679 1.20537 0.96575 0.95045 0.93818 1.21942 1.00250 0.95333 1.02534 1.21743 0.92457 1.01170 0.98655 1.20608 0.95587 1.03760 0.90465 1.21472 0.86958 0.88490 0.96106 1.67890 1.10829 1.20772 1.29198 1.22519 0.89730 0.93570 0.84981 1.98407 1.05092 1.93792 1.98191 1.67260 1.09845 1.26048 1.29278 1.18667 0.87003 0.87638 0.87405 1.44693 1.11031 1.73125 1.03426 1.21233 0.94435 0.99762 0.82749 1.21603 0.97829 1.01765 0.92870 1.18902 0.95002 0.94887 0.92315 1.21675 0.95326 1.47533 0.93424 0.91583 1.26013 0.96760 0.94822 1.02437 1.70108 1.14858 1.48842 1.23660 0.85428 0.78767 0.78805 0.77943 1.19812 1.21058 1.18388 1.20651 0.99882 1.11566 0.92038 1.20413 0.87416 1.01745 0.99971 0.92481 0.91125 0.91971 0.94097 0.90764 0.92939 0.91115 0.88118 0.87833 0.88673 0.73565 0.93140 0.93071 0.91534 0.91475 0.98955 0.98964 0.92805 0.89355 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.49 71.98 0.61 -0.51 16 2 C -0.06 -0.66 0.79 -52.13 -0.04 -0.70 16 3 C -0.14 -1.74 7.76 71.98 0.56 -1.18 16 4 C -0.10 -1.00 4.96 30.73 0.15 -0.85 16 5 C -0.07 -0.94 5.33 29.81 0.16 -0.79 16 6 C 0.21 4.72 5.91 42.06 0.25 4.97 16 7 N -0.56 -15.82 10.28 -179.72 -1.85 -17.66 16 8 C 0.39 12.15 8.18 180.88 1.48 13.63 16 9 Cl 0.02 0.49 29.27 -2.72 -0.08 0.41 16 10 N -0.60 -20.04 9.67 -188.20 -1.82 -21.86 16 11 C 0.44 12.73 7.48 133.33 1.00 13.73 16 12 N -0.69 -19.02 5.59 -344.33 -1.93 -20.95 16 13 C 0.14 4.93 5.72 86.38 0.49 5.43 16 14 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 17 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 19 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 20 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 24 C -0.23 -5.25 5.32 -19.77 -0.11 -5.35 16 25 C -0.06 -0.88 3.72 29.68 0.11 -0.77 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.04 0.64 5.54 -2.39 -0.01 0.63 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 33 H 0.10 0.56 8.13 -2.38 -0.02 0.54 16 34 H 0.10 1.30 6.82 -2.39 -0.02 1.28 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 9.26 6.66 -92.70 -0.62 8.65 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.09 1.23 8.11 -2.39 -0.02 1.21 16 45 H 0.08 1.16 7.09 -2.39 -0.02 1.14 16 Total: -1.00 -68.13 371.64 2.68 -65.45 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.37 Total: 9.85 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.67 Total: -4.14 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -5.31 Total: -117.20 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -0.08 Total: 0.41 kcal Total: -68.13 2.68 -65.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.429 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds