Wall clock time and date at job start Tue Mar 31 2020 13:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34809 * 117.00217 * 2 1 4 4 O 1.21560 * 119.99520 * 359.97438 * 3 2 1 5 5 C 1.47045 * 120.00638 * 180.02562 * 3 2 1 6 6 C 1.40113 * 120.10297 * 0.24635 * 5 3 2 7 7 C 1.37760 * 119.91335 * 180.27872 * 6 5 3 8 8 O 1.36074 * 119.92871 * 179.72665 * 7 6 5 9 9 C 1.42898 * 117.00144 * 359.97438 * 8 7 6 10 10 C 1.39799 * 120.13854 * 359.69942 * 7 6 5 11 11 N 1.39251 * 119.89051 * 180.02562 * 10 7 6 12 12 C 1.46495 * 120.00166 * 180.02562 * 11 10 7 13 13 C 1.53001 * 109.47254 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47288 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47287 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00020 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00294 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99823 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00282 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46986 * 89.99542 * 19 17 15 21 21 H 1.48502 * 109.47291 * 209.99708 * 19 17 15 22 22 H 1.48503 * 109.47040 * 329.99639 * 19 17 15 23 23 C 1.38787 * 120.22127 * 0.05237 * 10 7 6 24 24 C 1.38395 * 120.08172 * 359.96788 * 23 10 7 25 25 O 1.35707 * 120.07414 * 179.97438 * 24 23 10 26 26 C 1.42903 * 116.99975 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47373 * 300.00009 * 1 2 3 29 29 H 1.08996 * 109.47631 * 60.00267 * 1 2 3 30 30 H 1.07997 * 120.04248 * 0.02562 * 6 5 3 31 31 H 1.09001 * 109.47079 * 299.99561 * 9 8 7 32 32 H 1.09000 * 109.47391 * 60.00287 * 9 8 7 33 33 H 1.09007 * 109.47216 * 180.02562 * 9 8 7 34 34 H 0.97004 * 119.99633 * 0.03370 * 11 10 7 35 35 H 1.09005 * 109.47177 * 300.00677 * 12 11 10 36 36 H 1.09005 * 109.46870 * 60.00043 * 12 11 10 37 37 H 1.08999 * 109.46825 * 299.99838 * 13 12 11 38 38 H 1.08993 * 109.47217 * 59.99836 * 13 12 11 39 39 H 1.09005 * 109.46781 * 299.99916 * 14 13 12 40 40 H 1.08993 * 109.47504 * 59.99548 * 14 13 12 41 41 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.96077 * 179.97438 * 23 10 7 43 43 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.46938 * 59.99660 * 26 25 24 45 45 H 1.09004 * 109.46926 * 299.99782 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4019 2.2206 -0.0005 5 6 3.5324 1.2782 -0.0006 6 6 4.2977 0.1046 -0.0063 7 6 5.6731 0.1813 -0.0010 8 8 6.4167 -0.9584 -0.0010 9 6 5.7048 -2.1974 -0.0060 10 6 6.3066 1.4275 0.0037 11 7 7.6973 1.4990 0.0085 12 6 8.3637 2.8036 0.0141 13 6 9.8803 2.6017 0.0180 14 6 10.5762 3.9642 0.0244 15 6 12.0700 3.7653 0.0276 16 1 12.4818 2.7669 0.0257 17 6 12.9110 4.8579 0.0340 18 7 12.4095 6.0737 0.0369 19 14 14.7626 4.6113 0.0387 20 1 15.2574 4.5509 -1.3602 21 1 15.4113 5.7454 0.7447 22 1 15.0912 3.3416 0.7353 23 6 5.5541 2.5937 0.0042 24 6 4.1718 2.5272 -0.0006 25 8 3.4361 3.6676 0.0004 26 6 4.1544 4.9030 0.0061 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.8099 -0.8590 -0.0108 31 1 5.0754 -2.2584 0.8818 32 1 5.0813 -2.2547 -0.8982 33 1 6.4150 -3.0245 -0.0050 34 1 8.2248 0.6849 0.0081 35 1 8.0742 3.3633 -0.8754 36 1 8.0683 3.3586 0.9046 37 1 10.1700 2.0420 0.9073 38 1 10.1752 2.0469 -0.8726 39 1 10.2865 4.5244 -0.8647 40 1 10.2813 4.5187 0.9152 41 1 13.0011 6.8424 0.0410 42 1 6.0479 3.5542 0.0083 43 1 3.4487 5.7337 0.0058 44 1 4.7840 4.9613 -0.8819 45 1 4.7786 4.9563 0.8981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:52 Heat of formation + Delta-G solvation = -140.412176 kcal Electronic energy + Delta-G solvation = -27018.328270 eV Core-core repulsion = 23001.719196 eV Total energy + Delta-G solvation = -4016.609074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92832 -39.84309 -39.02972 -37.28256 -36.27273 -35.57716 -33.70264 -31.83391 -29.96594 -29.57735 -28.01104 -27.85120 -26.83009 -26.14637 -23.74024 -22.86157 -21.68108 -20.99361 -20.44058 -18.60818 -17.86442 -17.48122 -16.74506 -16.41522 -16.41077 -16.19974 -15.87795 -15.55408 -15.43756 -14.88100 -14.71302 -14.57209 -14.43455 -14.01457 -13.41788 -13.27390 -13.01961 -12.94870 -12.47065 -12.20731 -12.05991 -11.98941 -11.88727 -11.65427 -11.64856 -11.46336 -11.00754 -10.82757 -10.78623 -10.63289 -10.61502 -10.30244 -10.06382 -9.75469 -9.55349 -9.20504 -8.43449 -8.35435 -7.22879 -6.08442 -4.11304 0.84212 1.38784 2.66147 2.72004 3.11532 3.21147 3.27094 3.33716 3.36473 3.49233 3.73644 4.39574 4.60749 4.76141 4.91770 4.96541 5.01275 5.03518 5.04739 5.11581 5.18180 5.27837 5.28253 5.32709 5.37583 5.45374 5.48429 5.50938 5.58573 5.71366 5.83408 5.96626 6.03647 6.33229 6.41722 6.47187 6.50470 6.88449 7.02189 7.20365 7.46691 7.54405 7.66122 7.74039 7.89395 7.89743 8.31323 8.94981 9.53400 11.02840 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002461 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.712561 B =11375.294851 C =12792.331205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.514 3.486 4 O -0.501 6.501 5 C -0.209 4.209 6 C -0.072 4.072 7 C 0.001 3.999 8 O -0.320 6.320 9 C 0.031 3.969 10 C 0.286 3.714 11 N -0.716 5.716 12 C 0.113 3.887 13 C -0.121 4.121 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.287 4.287 24 C 0.221 3.779 25 O -0.286 6.286 26 C 0.020 3.980 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.145 0.855 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.409 0.591 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.147 0.853 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.956 -13.349 -0.090 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.282 6.282 3 C 0.361 3.639 4 O -0.389 6.389 5 C -0.213 4.213 6 C -0.092 4.092 7 C -0.047 4.047 8 O -0.235 6.235 9 C -0.064 4.064 10 C 0.175 3.825 11 N -0.340 5.340 12 C -0.010 4.010 13 C -0.159 4.159 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.311 4.311 24 C 0.172 3.828 25 O -0.196 6.196 26 C -0.075 4.075 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.165 0.835 43 H 0.119 0.881 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.004 -12.636 -0.082 24.512 hybrid contribution 1.076 -0.265 -0.010 1.108 sum -19.928 -12.901 -0.092 23.739 Atomic orbital electron populations 1.23172 0.76685 1.03203 1.02432 1.86532 1.22985 1.33433 1.85287 1.20755 0.88707 0.81198 0.73265 1.90869 1.66437 1.35560 1.46080 1.17669 0.88902 0.91003 1.23771 1.20945 0.91476 0.98144 0.98679 1.18113 0.89626 0.85510 1.11424 1.85990 1.34594 1.12302 1.90576 1.22985 0.98206 0.84039 1.01164 1.17200 0.84625 0.90239 0.90441 1.45087 1.02083 1.10040 1.76787 1.21801 0.94663 0.83383 1.01121 1.21870 0.90472 1.02326 1.01224 1.19025 0.94840 0.89867 0.97523 1.21190 0.91323 0.92616 1.50969 0.92620 1.25024 0.98983 0.95246 0.95193 1.69955 1.35096 0.97719 1.50570 0.86572 0.85388 0.77777 0.78141 1.20620 1.21175 1.19866 1.20451 0.91777 0.98298 1.20620 1.18541 0.88921 0.85534 0.89818 1.86306 1.34302 1.12397 1.86642 1.23196 0.98307 0.84122 1.01914 0.88420 0.92103 0.92096 0.83766 0.92839 0.92836 0.88445 0.75454 0.91964 0.91959 0.92545 0.92541 0.96325 0.96308 0.92898 0.83525 0.88061 0.92199 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.23 9.80 -40.79 -0.40 -4.63 16 3 C 0.51 7.35 7.88 34.30 0.27 7.62 16 4 O -0.50 -8.36 14.93 -26.67 -0.40 -8.75 16 5 C -0.21 -2.91 5.89 -104.84 -0.62 -3.53 16 6 C -0.07 -0.87 8.59 -39.05 -0.34 -1.20 16 7 C 0.00 0.01 6.70 -39.17 -0.26 -0.25 16 8 O -0.32 -3.74 9.72 -19.97 -0.19 -3.93 16 9 C 0.03 0.24 9.81 101.05 0.99 1.23 16 10 C 0.29 3.96 6.66 -83.70 -0.56 3.41 16 11 N -0.72 -10.05 5.70 -58.54 -0.33 -10.38 16 12 C 0.11 1.76 4.90 -4.04 -0.02 1.74 16 13 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 14 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.29 -3.90 8.27 -39.32 -0.33 -4.22 16 24 C 0.22 3.15 6.69 -38.74 -0.26 2.89 16 25 O -0.29 -4.10 8.55 -40.81 -0.35 -4.45 16 26 C 0.02 0.21 9.81 101.05 0.99 1.20 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.14 1.41 5.81 -52.49 -0.30 1.10 16 31 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 32 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.41 5.51 7.80 -40.82 -0.32 5.19 16 35 H 0.06 0.96 7.93 -51.93 -0.41 0.54 16 36 H 0.06 0.96 7.93 -51.93 -0.41 0.54 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.15 1.86 4.91 -52.49 -0.26 1.60 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 45 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -32.84 377.74 -6.65 -39.49 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.64 Total: 0.95 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 0.25 Total: -4.74 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.40 Total: -35.77 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.34 Total: -21.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.84 -6.65 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.918 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds