Wall clock time and date at job start Tue Mar 31 2020 14:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36096 * 117.00093 * 2 1 4 4 C 1.38540 * 119.99752 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.06853 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.96033 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47266 * 264.99910 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47081 * 119.99727 * 11 9 7 14 14 H 1.48501 * 109.47213 * 240.00099 * 11 9 7 15 15 C 1.38862 * 120.07454 * 0.29502 * 5 4 3 16 16 N 1.39917 * 120.00138 * 179.70115 * 15 5 4 17 17 C 1.46510 * 119.99747 * 179.97438 * 16 15 5 18 18 C 1.53004 * 109.46914 * 180.02562 * 17 16 15 19 19 O 1.43752 * 109.63108 * 58.90700 * 18 17 16 20 20 C 1.44585 * 104.91804 * 215.71010 * 19 18 17 21 21 C 1.54907 * 101.63716 * 36.26953 * 20 19 18 22 22 O 1.43363 * 109.63237 * 299.69320 * 18 17 16 23 23 C 1.38829 * 119.99494 * 359.43213 * 15 5 4 24 24 C 1.38521 * 119.92558 * 0.54572 * 23 15 5 25 25 O 1.35992 * 120.03324 * 179.72704 * 24 23 15 26 26 C 1.42902 * 116.99970 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47390 * 300.00588 * 1 2 3 28 28 H 1.08999 * 109.47017 * 60.00176 * 1 2 3 29 29 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.96093 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47205 * 145.00004 * 6 5 4 32 32 H 1.08997 * 109.47395 * 25.00496 * 6 5 4 33 33 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 34 34 H 0.96999 * 120.00688 * 0.02562 * 16 15 5 35 35 H 1.09001 * 109.46883 * 299.99703 * 17 16 15 36 36 H 1.08992 * 109.46924 * 60.00219 * 17 16 15 37 37 H 1.08998 * 109.62289 * 179.29469 * 18 17 16 38 38 H 1.09002 * 111.08273 * 278.16021 * 20 19 18 39 39 H 1.09000 * 110.98081 * 154.33554 * 20 19 18 40 40 H 1.09004 * 110.69404 * 205.96202 * 21 20 19 41 41 H 1.08992 * 110.84458 * 82.82474 * 21 20 19 42 42 H 1.07999 * 120.03619 * 180.31615 * 23 15 5 43 43 H 1.09000 * 109.47151 * 179.97438 * 26 25 24 44 44 H 1.08995 * 109.47007 * 299.99893 * 26 25 24 45 45 H 1.09001 * 109.46802 * 60.00452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0005 5 6 1.9182 3.6067 0.0000 6 6 1.0950 4.8690 0.0000 7 6 0.9249 5.3578 -1.4153 8 1 1.3681 4.8090 -2.2331 9 6 0.2033 6.5056 -1.6663 10 7 -0.3410 7.1709 -0.6709 11 14 -0.0082 7.1111 -3.4207 12 1 0.6909 6.1880 -4.3506 13 1 -1.4536 7.1541 -3.7586 14 1 0.5706 8.4728 -3.5476 15 6 3.3047 3.6829 -0.0051 16 7 3.9368 4.9311 -0.0109 17 6 5.3997 5.0114 -0.0157 18 6 5.8298 6.4797 -0.0209 19 8 5.2982 7.1428 1.1385 20 6 4.9773 8.4789 0.6888 21 6 4.4782 8.2118 -0.7531 22 8 5.3196 7.1270 -1.1939 23 6 4.0637 2.5204 0.0011 24 6 3.4363 1.2855 0.0011 25 8 4.1776 0.1454 0.0016 26 6 5.5987 0.2956 0.0028 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2138 2.3172 -0.0014 31 1 1.6015 5.6330 0.5898 32 1 0.1163 4.6645 0.4339 33 1 -0.8483 7.9786 -0.8474 34 1 3.4066 5.7434 -0.0109 35 1 5.7934 4.5210 0.8746 36 1 5.7878 4.5156 -0.9054 37 1 6.9180 6.5424 -0.0118 38 1 5.8631 9.1142 0.6838 39 1 4.1885 8.9175 1.2999 40 1 4.6237 9.0914 -1.3803 41 1 3.4307 7.9106 -0.7514 42 1 5.1421 2.5789 0.0023 43 1 6.0681 -0.6881 0.0035 44 1 5.9067 0.8448 -0.8869 45 1 5.9053 0.8447 0.8931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169066959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:24 Heat of formation + Delta-G solvation = -131.943924 kcal Electronic energy + Delta-G solvation = -28666.539183 eV Core-core repulsion = 24650.297320 eV Total energy + Delta-G solvation = -4016.241863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40794 -39.88736 -37.85871 -37.35104 -34.92826 -34.29559 -33.13767 -30.90391 -30.54037 -28.62319 -27.80562 -26.97634 -26.81276 -25.20463 -23.20361 -23.00760 -22.41293 -20.63782 -20.32595 -18.10278 -17.32454 -16.97008 -16.59629 -16.28901 -16.02498 -15.80101 -15.53504 -14.93446 -14.78136 -14.72064 -14.56847 -14.04340 -13.88039 -13.74479 -13.58285 -13.19156 -12.71398 -12.57204 -12.41058 -12.38802 -12.07287 -11.87526 -11.60579 -11.35602 -11.24700 -11.06168 -10.97144 -10.73023 -10.60349 -10.49294 -10.45814 -10.15741 -9.58786 -9.51071 -9.37709 -8.66289 -8.45532 -7.72563 -6.31589 -6.00830 -4.09538 2.07837 2.36506 3.24796 3.33880 3.41093 3.45641 3.72833 3.88391 3.99807 4.05126 4.37625 4.58617 4.64772 4.86611 5.02109 5.22042 5.25201 5.27150 5.30186 5.38030 5.42106 5.46053 5.54268 5.61499 5.64956 5.67694 5.75165 5.82618 5.87514 5.93316 6.00095 6.03354 6.06119 6.25398 6.60586 6.91390 7.07379 7.10370 7.25940 7.49815 7.57799 7.78105 7.89910 7.96886 8.26169 8.33999 8.48959 8.97093 9.54374 11.02180 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.005689 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.462196 B = 4920.925613 C = 7303.870555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.034 3.966 4 C -0.127 4.127 5 C -0.103 4.103 6 C 0.061 3.939 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.895 5.895 11 Si 0.888 3.112 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.223 3.777 16 N -0.728 5.728 17 C 0.117 3.883 18 C 0.223 3.777 19 O -0.372 6.372 20 C 0.018 3.982 21 C 0.017 3.983 22 O -0.377 6.377 23 C -0.256 4.256 24 C 0.115 3.885 25 O -0.312 6.312 26 C 0.031 3.969 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.023 0.977 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.452 -3.410 3.027 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C -0.011 4.011 4 C -0.147 4.147 5 C -0.107 4.107 6 C 0.024 3.976 7 C -0.541 4.541 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.716 3.284 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.120 3.880 16 N -0.362 5.362 17 C -0.009 4.009 18 C 0.128 3.872 19 O -0.292 6.292 20 C -0.059 4.059 21 C -0.060 4.060 22 O -0.298 6.298 23 C -0.280 4.280 24 C 0.070 3.930 25 O -0.226 6.226 26 C -0.064 4.064 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.148 0.852 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.253 0.747 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.595 -3.794 3.060 12.578 hybrid contribution -0.351 1.253 -1.030 1.659 sum 11.243 -2.542 2.031 11.705 Atomic orbital electron populations 1.22895 0.79776 1.02604 1.01202 1.86055 1.19992 1.26599 1.90648 1.17917 0.88700 0.84779 1.09751 1.20741 0.99398 0.90394 1.04156 1.19898 0.91678 0.96805 1.02337 1.18100 0.93952 0.88254 0.97297 1.21162 1.32357 1.08406 0.92185 0.92474 1.24978 0.95658 0.96770 0.96804 1.69979 1.35177 1.17705 1.30570 0.86592 0.77879 0.78617 0.85359 1.19669 1.21027 1.21068 1.17266 0.91002 0.84831 0.94946 1.44404 1.03657 1.05992 1.82140 1.21688 0.83813 0.94057 1.01366 1.24324 0.96450 0.91162 0.75284 1.89237 1.83686 1.24343 1.31924 1.24370 1.00912 0.85145 0.95431 1.24333 0.97026 0.90215 0.94389 1.88918 1.65525 1.46609 1.28757 1.20267 0.98922 0.90290 1.18477 1.17703 0.87749 0.84906 1.02679 1.86107 1.17809 1.28975 1.89732 1.22900 0.79929 1.02742 1.00848 0.93221 0.93016 0.89315 0.85243 0.95919 0.95463 0.93045 0.74741 0.91463 0.91088 0.89088 0.90972 0.87046 0.88425 0.88855 0.85878 0.89107 0.93231 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.32 -5.94 10.28 -34.65 -0.36 -6.30 16 3 C 0.03 0.69 6.70 -39.14 -0.26 0.42 16 4 C -0.13 -2.65 8.66 -39.48 -0.34 -2.99 16 5 C -0.10 -2.30 5.09 -104.40 -0.53 -2.83 16 6 C 0.06 1.53 4.52 -29.04 -0.13 1.40 16 7 C -0.50 -13.58 9.09 -34.44 -0.31 -13.90 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.22 4.55 6.63 -83.72 -0.56 4.00 16 16 N -0.73 -13.82 5.43 -58.59 -0.32 -14.14 16 17 C 0.12 1.74 5.04 -4.03 -0.02 1.72 16 18 C 0.22 3.10 4.20 37.16 0.16 3.25 16 19 O -0.37 -5.48 11.04 -59.05 -0.65 -6.13 16 20 C 0.02 0.22 7.95 38.16 0.30 0.52 16 21 C 0.02 0.24 7.69 38.16 0.29 0.53 16 22 O -0.38 -5.95 10.99 -59.05 -0.65 -6.60 16 23 C -0.26 -4.68 8.30 -39.26 -0.33 -5.00 16 24 C 0.11 2.21 6.70 -39.14 -0.26 1.94 16 25 O -0.31 -5.46 10.28 -34.32 -0.35 -5.81 16 26 C 0.03 0.38 9.81 101.05 0.99 1.38 16 27 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 28 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.13 2.54 6.29 -52.49 -0.33 2.21 16 31 H 0.02 0.59 6.82 -51.93 -0.35 0.24 16 32 H 0.03 0.72 8.05 -51.93 -0.42 0.31 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.41 8.65 5.57 -40.82 -0.23 8.42 16 35 H 0.07 0.90 7.94 -51.93 -0.41 0.49 16 36 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.62 7.79 -51.93 -0.40 1.21 16 42 H 0.12 1.89 4.97 -52.49 -0.26 1.63 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 45 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -32.15 368.73 -7.65 -39.80 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.49 Total: 8.59 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.10 Total: -6.64 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.42 Total: -38.51 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -2.01 Total: -24.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.15 -7.65 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169066959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.143 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds