Wall clock time and date at job start Tue Mar 31 2020 14:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36096 * 117.00093 * 2 1 4 4 C 1.38540 * 119.99752 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.06853 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.96033 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47266 * 264.99910 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47081 * 119.99727 * 11 9 7 14 14 H 1.48501 * 109.47213 * 240.00099 * 11 9 7 15 15 C 1.38862 * 120.07454 * 0.29502 * 5 4 3 16 16 N 1.39917 * 120.00138 * 179.70115 * 15 5 4 17 17 C 1.46510 * 119.99747 * 179.97438 * 16 15 5 18 18 C 1.53004 * 109.46914 * 180.02562 * 17 16 15 19 19 O 1.43752 * 109.63108 * 58.90700 * 18 17 16 20 20 C 1.44585 * 104.91804 * 215.71010 * 19 18 17 21 21 C 1.54907 * 101.63716 * 36.26953 * 20 19 18 22 22 O 1.43363 * 109.63237 * 299.69320 * 18 17 16 23 23 C 1.38829 * 119.99494 * 359.43213 * 15 5 4 24 24 C 1.38521 * 119.92558 * 0.54572 * 23 15 5 25 25 O 1.35992 * 120.03324 * 179.72704 * 24 23 15 26 26 C 1.42902 * 116.99970 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47390 * 300.00588 * 1 2 3 28 28 H 1.08999 * 109.47017 * 60.00176 * 1 2 3 29 29 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.96093 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47205 * 145.00004 * 6 5 4 32 32 H 1.08997 * 109.47395 * 25.00496 * 6 5 4 33 33 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 34 34 H 0.96999 * 120.00688 * 0.02562 * 16 15 5 35 35 H 1.09001 * 109.46883 * 299.99703 * 17 16 15 36 36 H 1.08992 * 109.46924 * 60.00219 * 17 16 15 37 37 H 1.08998 * 109.62289 * 179.29469 * 18 17 16 38 38 H 1.09002 * 111.08273 * 278.16021 * 20 19 18 39 39 H 1.09000 * 110.98081 * 154.33554 * 20 19 18 40 40 H 1.09004 * 110.69404 * 205.96202 * 21 20 19 41 41 H 1.08992 * 110.84458 * 82.82474 * 21 20 19 42 42 H 1.07999 * 120.03619 * 180.31615 * 23 15 5 43 43 H 1.09000 * 109.47151 * 179.97438 * 26 25 24 44 44 H 1.08995 * 109.47007 * 299.99893 * 26 25 24 45 45 H 1.09001 * 109.46802 * 60.00452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0005 5 6 1.9182 3.6067 0.0000 6 6 1.0950 4.8690 0.0000 7 6 0.9249 5.3578 -1.4153 8 1 1.3681 4.8090 -2.2331 9 6 0.2033 6.5056 -1.6663 10 7 -0.3410 7.1709 -0.6709 11 14 -0.0082 7.1111 -3.4207 12 1 0.6909 6.1880 -4.3506 13 1 -1.4536 7.1541 -3.7586 14 1 0.5706 8.4728 -3.5476 15 6 3.3047 3.6829 -0.0051 16 7 3.9368 4.9311 -0.0109 17 6 5.3997 5.0114 -0.0157 18 6 5.8298 6.4797 -0.0209 19 8 5.2982 7.1428 1.1385 20 6 4.9773 8.4789 0.6888 21 6 4.4782 8.2118 -0.7531 22 8 5.3196 7.1270 -1.1939 23 6 4.0637 2.5204 0.0011 24 6 3.4363 1.2855 0.0011 25 8 4.1776 0.1454 0.0016 26 6 5.5987 0.2956 0.0028 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2138 2.3172 -0.0014 31 1 1.6015 5.6330 0.5898 32 1 0.1163 4.6645 0.4339 33 1 -0.8483 7.9786 -0.8474 34 1 3.4066 5.7434 -0.0109 35 1 5.7934 4.5210 0.8746 36 1 5.7878 4.5156 -0.9054 37 1 6.9180 6.5424 -0.0118 38 1 5.8631 9.1142 0.6838 39 1 4.1885 8.9175 1.2999 40 1 4.6237 9.0914 -1.3803 41 1 3.4307 7.9106 -0.7514 42 1 5.1421 2.5789 0.0023 43 1 6.0681 -0.6881 0.0035 44 1 5.9067 0.8448 -0.8869 45 1 5.9053 0.8447 0.8931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169066959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:23 Heat of formation + Delta-G solvation = -153.653872 kcal Electronic energy + Delta-G solvation = -28667.480597 eV Core-core repulsion = 24650.297320 eV Total energy + Delta-G solvation = -4017.183277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60162 -41.22837 -39.19613 -38.80326 -36.04112 -35.74656 -35.07845 -32.55852 -31.82100 -29.90483 -29.30500 -28.39076 -27.94237 -26.70099 -24.85823 -24.23777 -23.64607 -22.01033 -21.91182 -19.43908 -18.56444 -18.43813 -18.21823 -17.85904 -17.32519 -16.96526 -16.83568 -16.52949 -16.14608 -16.00169 -15.96473 -15.37733 -15.08984 -15.04446 -14.96189 -14.48817 -14.28358 -13.85187 -13.83131 -13.74038 -13.48285 -13.31673 -13.13202 -12.90357 -12.66565 -12.50175 -12.39738 -12.26167 -12.09870 -12.06001 -11.94407 -11.39059 -11.33710 -11.20038 -10.68605 -10.57490 -10.14454 -9.23240 -8.22341 -7.71986 -6.27490 0.52778 0.81665 1.34993 1.38271 1.50381 2.39600 2.42353 2.46258 2.55938 2.69176 2.96387 2.99731 3.13224 3.62711 3.80746 3.96203 4.04169 4.19906 4.23981 4.27585 4.33836 4.44851 4.45940 4.46263 4.48731 4.54318 4.59088 4.61062 4.66135 4.73155 4.77471 4.79142 4.81966 4.95345 5.03873 5.20771 5.37378 5.43256 5.70284 5.78662 5.91608 6.01176 6.22832 6.28281 6.53360 6.82456 6.85399 6.89581 7.40028 8.91785 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.005689 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.462196 B = 4920.925613 C = 7303.870555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.330 6.330 3 C 0.021 3.979 4 C -0.131 4.131 5 C -0.141 4.141 6 C 0.080 3.920 7 C -0.512 4.512 8 H 0.042 0.958 9 C 0.017 3.983 10 N -0.923 5.923 11 Si 0.949 3.051 12 H -0.275 1.275 13 H -0.279 1.279 14 H -0.272 1.272 15 C 0.216 3.784 16 N -0.735 5.735 17 C 0.108 3.892 18 C 0.221 3.779 19 O -0.393 6.393 20 C 0.022 3.978 21 C 0.013 3.987 22 O -0.396 6.396 23 C -0.247 4.247 24 C 0.120 3.880 25 O -0.327 6.327 26 C 0.019 3.981 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.003 0.997 32 H -0.002 1.002 33 H 0.264 0.736 34 H 0.400 0.600 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.050 0.950 42 H 0.156 0.844 43 H 0.120 0.880 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 -3.889 2.509 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.245 6.245 3 C -0.025 4.025 4 C -0.151 4.151 5 C -0.146 4.146 6 C 0.043 3.957 7 C -0.550 4.550 8 H 0.061 0.939 9 C -0.182 4.182 10 N -0.563 5.563 11 Si 0.774 3.226 12 H -0.200 1.200 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.111 3.889 16 N -0.367 5.367 17 C -0.016 4.016 18 C 0.126 3.874 19 O -0.313 6.313 20 C -0.053 4.053 21 C -0.063 4.063 22 O -0.318 6.318 23 C -0.271 4.271 24 C 0.074 3.926 25 O -0.241 6.241 26 C -0.075 4.075 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.173 0.827 43 H 0.139 0.861 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.996 -4.284 2.548 14.857 hybrid contribution -1.039 1.301 -0.835 1.862 sum 12.958 -2.983 1.713 13.406 Atomic orbital electron populations 1.23165 0.77829 1.04869 1.01206 1.86032 1.22052 1.25864 1.90576 1.18043 0.89517 0.84855 1.10084 1.20726 0.99592 0.90506 1.04239 1.19723 0.92757 0.95907 1.06188 1.17745 0.92737 0.89390 0.95864 1.21254 1.32446 1.08637 0.92634 0.93931 1.25672 0.95205 0.96770 1.00508 1.70073 1.35638 1.18119 1.32456 0.85647 0.77880 0.78404 0.80652 1.19997 1.20465 1.19707 1.17416 0.90509 0.86184 0.94775 1.44597 1.05418 1.04905 1.81767 1.22028 0.81292 0.95619 1.02686 1.24614 0.98140 0.90141 0.74522 1.89206 1.84027 1.25627 1.32488 1.24511 1.02436 0.84684 0.93702 1.24320 0.94705 0.90599 0.96643 1.88890 1.65590 1.47217 1.30060 1.20475 1.00302 0.89043 1.17274 1.17895 0.87887 0.85809 1.01017 1.86099 1.20488 1.28246 1.89264 1.23303 0.77072 1.05184 1.01953 0.92891 0.93374 0.85899 0.85342 0.97876 0.98340 0.92679 0.76326 0.89531 0.89960 0.85197 0.87413 0.86845 0.85984 0.93205 0.82663 0.86139 0.92229 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.33 -12.19 10.28 -80.67 -0.83 -13.02 16 3 C 0.02 0.85 6.70 22.56 0.15 1.00 16 4 C -0.13 -5.67 8.66 22.33 0.19 -5.47 16 5 C -0.14 -6.60 5.09 -19.72 -0.10 -6.70 16 6 C 0.08 4.26 4.52 29.10 0.13 4.40 16 7 C -0.51 -28.89 9.09 25.60 0.23 -28.66 16 8 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.02 0.95 5.46 84.66 0.46 1.41 16 10 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 11 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 15 C 0.22 8.90 6.63 38.14 0.25 9.16 16 16 N -0.74 -28.23 5.43 -339.30 -1.84 -30.07 16 17 C 0.11 3.04 5.04 86.38 0.44 3.47 16 18 C 0.22 5.71 4.20 71.98 0.30 6.01 16 19 O -0.39 -11.12 11.04 -126.20 -1.39 -12.51 16 20 C 0.02 0.52 7.95 72.63 0.58 1.09 16 21 C 0.01 0.38 7.69 72.63 0.56 0.94 16 22 O -0.40 -12.14 10.99 -126.20 -1.39 -13.52 16 23 C -0.25 -8.72 8.30 22.48 0.19 -8.53 16 24 C 0.12 4.48 6.70 22.55 0.15 4.63 16 25 O -0.33 -10.72 10.28 -79.49 -0.82 -11.53 16 26 C 0.02 0.40 9.81 113.37 1.11 1.52 16 27 H 0.05 1.45 7.66 -2.38 -0.02 1.43 16 28 H 0.05 1.38 7.66 -2.39 -0.02 1.36 16 29 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.13 5.35 6.29 -2.91 -0.02 5.33 16 31 H 0.00 0.18 6.82 -2.38 -0.02 0.16 16 32 H 0.00 -0.10 8.05 -2.39 -0.02 -0.12 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.40 17.50 5.57 -92.71 -0.52 16.99 16 35 H 0.09 2.09 7.94 -2.39 -0.02 2.07 16 36 H 0.08 2.12 7.96 -2.39 -0.02 2.10 16 37 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 41 H 0.05 1.83 7.79 -2.39 -0.02 1.81 16 42 H 0.16 4.31 4.97 -2.91 -0.01 4.30 16 43 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 45 H 0.06 1.16 7.66 -2.39 -0.02 1.15 16 Total: -1.00 -71.97 368.73 2.30 -69.67 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.50 Total: 32.08 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 5.76 Total: -13.96 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.56 Total: -83.20 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -4.43 Total: -50.59 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.97 2.30 -69.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169066959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.987 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds