Wall clock time and date at job start Tue Mar 31 2020 14:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36101 * 116.99745 * 2 1 4 4 C 1.38535 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.38206 * 120.07049 * 179.71999 * 4 3 2 6 6 C 1.50698 * 119.96784 * 180.29321 * 5 4 3 7 7 C 1.50697 * 109.47167 * 265.25457 * 6 5 4 8 8 H 1.07993 * 120.00116 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31524 * 120.00136 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00326 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46755 * 59.99797 * 11 9 7 13 13 H 1.48495 * 109.47194 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46511 * 300.00011 * 11 9 7 15 15 C 1.38869 * 120.06719 * 0.55100 * 5 4 3 16 16 N 1.39928 * 119.99959 * 179.75089 * 15 5 4 17 17 C 1.46493 * 119.99716 * 179.72260 * 16 15 5 18 18 C 1.50706 * 109.47128 * 179.97438 * 17 16 15 19 19 O 1.20758 * 119.99420 * 359.97438 * 18 17 16 20 20 C 1.50693 * 120.00436 * 179.72172 * 18 17 16 21 21 C 1.52992 * 109.47449 * 179.97438 * 20 18 17 22 22 O 1.42898 * 109.47242 * 180.02562 * 21 20 18 23 23 C 1.38825 * 119.99902 * 359.46630 * 15 5 4 24 24 C 1.38517 * 119.92598 * 0.25667 * 23 15 5 25 25 O 1.35989 * 120.03374 * 179.97438 * 24 23 15 26 26 C 1.42897 * 117.00168 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47301 * 299.98947 * 1 2 3 28 28 H 1.08989 * 109.47785 * 59.99545 * 1 2 3 29 29 H 1.09007 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.96698 * 359.97180 * 4 3 2 31 31 H 1.09001 * 109.46889 * 25.25603 * 6 5 4 32 32 H 1.09000 * 109.47286 * 145.25112 * 6 5 4 33 33 H 0.96998 * 119.99748 * 179.97438 * 10 9 7 34 34 H 0.97005 * 119.99754 * 359.71579 * 16 15 5 35 35 H 1.09001 * 109.47786 * 59.99784 * 17 16 15 36 36 H 1.08998 * 109.47558 * 299.99647 * 17 16 15 37 37 H 1.09001 * 109.47107 * 300.00731 * 20 18 17 38 38 H 1.09006 * 109.47179 * 59.99964 * 20 18 17 39 39 H 1.09001 * 109.47602 * 300.00476 * 21 20 18 40 40 H 1.09001 * 109.46922 * 60.00331 * 21 20 18 41 41 H 0.96702 * 114.00164 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.03876 * 180.28026 * 23 15 5 43 43 H 1.08997 * 109.47470 * 179.97438 * 26 25 24 44 44 H 1.09005 * 109.46557 * 299.99729 * 26 25 24 45 45 H 1.08998 * 109.47661 * 59.99014 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2127 0.0000 4 6 1.2922 2.3745 -0.0005 5 6 1.9180 3.6067 0.0053 6 6 1.0948 4.8690 0.0114 7 6 0.9188 5.3608 -1.4022 8 1 1.3593 4.8142 -2.2228 9 6 0.1954 6.5085 -1.6478 10 7 -0.3415 7.1739 -0.6484 11 14 -0.0235 7.1177 -3.4000 12 1 -0.7166 6.0781 -4.2025 13 1 -0.8355 8.3609 -3.3941 14 1 1.3074 7.3979 -3.9964 15 6 3.3046 3.6829 0.0002 16 7 3.9367 4.9313 0.0008 17 6 5.3994 5.0116 0.0016 18 6 5.8232 6.4578 0.0015 19 8 4.9892 7.3312 0.0005 20 6 7.2874 6.8141 0.0086 21 6 7.4420 8.3362 0.0064 22 8 8.8304 8.6740 0.0124 23 6 4.0636 2.5205 0.0004 24 6 3.4363 1.2856 0.0003 25 8 4.1776 0.1455 -0.0001 26 6 5.5987 0.2957 0.0002 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2137 2.3172 -0.0014 31 1 0.1179 4.6635 0.4490 32 1 1.6037 5.6318 0.6007 33 1 -0.8501 7.9816 -0.8212 34 1 3.4063 5.7435 0.0007 35 1 5.7909 4.5187 -0.8883 36 1 5.7900 4.5182 0.8916 37 1 7.7573 6.4020 0.9015 38 1 7.7665 6.3993 -0.8784 39 1 6.9721 8.7479 -0.8868 40 1 6.9628 8.7513 0.8931 41 1 9.0038 9.6253 0.0119 42 1 5.1420 2.5790 0.0009 43 1 6.0681 -0.6880 0.0004 44 1 5.9060 0.8453 -0.8896 45 1 5.9059 0.8447 0.8903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170101525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:27 Heat of formation + Delta-G solvation = -133.915749 kcal Electronic energy + Delta-G solvation = -27549.941695 eV Core-core repulsion = 23533.614327 eV Total energy + Delta-G solvation = -4016.327367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.17742 -39.70307 -37.92067 -37.40995 -36.94673 -34.15506 -33.11879 -31.84003 -30.80337 -29.23201 -27.95820 -27.15990 -26.86428 -25.30197 -23.35853 -23.02563 -21.08475 -20.44850 -19.61557 -18.19407 -17.65603 -16.88451 -16.48658 -16.30244 -16.21623 -15.64899 -15.59809 -15.12345 -14.83690 -14.79138 -14.59936 -14.56568 -14.07958 -13.88034 -13.72210 -13.26163 -13.14354 -12.47829 -12.45006 -12.15558 -12.06740 -11.91706 -11.62530 -11.51253 -11.27116 -11.10186 -10.97325 -10.78464 -10.69726 -10.51249 -10.44438 -10.24847 -9.77957 -9.53570 -9.40363 -8.76568 -8.40170 -7.80835 -6.39960 -5.98755 -4.05658 1.83907 1.99909 2.28283 3.32426 3.32602 3.36531 3.39853 3.66907 3.84481 4.07587 4.37494 4.38680 4.54024 4.67299 4.76548 5.13441 5.20918 5.26842 5.31444 5.32167 5.35154 5.36928 5.43136 5.49629 5.57720 5.57971 5.58664 5.59318 5.77380 5.80070 5.96135 5.98830 6.17344 6.52107 6.83711 7.04656 7.19424 7.28815 7.38587 7.47450 7.55855 7.74099 7.86523 7.94213 8.19921 8.34134 8.40555 8.99287 9.58486 11.07265 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007268 B = 0.004992 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.837092 B = 5608.060618 C = 8913.652465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.038 3.962 4 C -0.128 4.128 5 C -0.097 4.097 6 C 0.060 3.940 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.219 3.781 16 N -0.736 5.736 17 C 0.081 3.919 18 C 0.348 3.652 19 O -0.431 6.431 20 C -0.167 4.167 21 C 0.082 3.918 22 O -0.577 6.577 23 C -0.255 4.255 24 C 0.113 3.887 25 O -0.312 6.312 26 C 0.031 3.969 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.422 0.578 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.383 0.617 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.689 -6.124 2.973 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C -0.007 4.007 4 C -0.148 4.148 5 C -0.101 4.101 6 C 0.023 3.977 7 C -0.547 4.547 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.116 3.884 16 N -0.373 5.373 17 C -0.046 4.046 18 C 0.221 3.779 19 O -0.302 6.302 20 C -0.205 4.205 21 C 0.004 3.996 22 O -0.383 6.383 23 C -0.279 4.279 24 C 0.068 3.932 25 O -0.225 6.225 26 C -0.065 4.065 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.149 0.851 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.230 0.770 42 H 0.142 0.858 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.387 -6.516 3.016 16.079 hybrid contribution -0.336 1.572 -1.056 1.923 sum 14.050 -4.945 1.960 15.023 Atomic orbital electron populations 1.22910 0.79667 1.02688 1.01268 1.86062 1.20081 1.26517 1.90550 1.17952 0.88738 0.84833 1.09215 1.20769 0.99535 0.90329 1.04122 1.19937 0.91625 0.96896 1.01642 1.18120 0.93986 0.88166 0.97469 1.21018 1.32974 1.08761 0.91989 0.92656 1.24982 0.95581 0.96611 0.96906 1.69943 1.34963 1.17588 1.30665 0.86657 0.78148 0.78094 0.85132 1.20227 1.21295 1.20336 1.17224 0.91040 0.84471 0.95627 1.44497 1.03089 1.06861 1.82850 1.21456 0.84934 0.95145 1.03016 1.24575 0.90619 0.91149 0.71524 1.90505 1.54777 1.50932 1.33966 1.21903 0.95453 0.97126 1.05974 1.21906 0.81855 0.94482 1.01359 1.86389 1.24692 1.29410 1.97853 1.20278 0.98894 0.90282 1.18399 1.17693 0.87766 0.84924 1.02824 1.86116 1.17817 1.28899 1.89716 1.22907 0.79908 1.02830 1.00805 0.93162 0.92952 0.89247 0.85100 0.95421 0.95684 0.92860 0.73582 0.89446 0.89493 0.87497 0.87491 0.92705 0.92746 0.76957 0.85784 0.89061 0.93224 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.32 -5.73 10.28 -34.67 -0.36 -6.09 16 3 C 0.04 0.74 6.70 -39.14 -0.26 0.48 16 4 C -0.13 -2.60 8.66 -39.48 -0.34 -2.94 16 5 C -0.10 -2.13 5.09 -104.40 -0.53 -2.66 16 6 C 0.06 1.52 4.53 -29.04 -0.13 1.39 16 7 C -0.51 -14.09 9.09 -34.44 -0.31 -14.41 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 11 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.22 4.27 6.63 -83.71 -0.56 3.72 16 16 N -0.74 -13.44 5.61 -59.77 -0.34 -13.77 16 17 C 0.08 1.03 5.33 -5.19 -0.03 1.00 16 18 C 0.35 4.44 7.23 -29.04 -0.21 4.23 16 19 O -0.43 -7.46 15.29 6.00 0.09 -7.37 16 20 C -0.17 -1.54 6.01 -27.89 -0.17 -1.71 16 21 C 0.08 0.83 6.34 37.15 0.24 1.06 16 22 O -0.58 -5.37 13.66 -35.23 -0.48 -5.85 16 23 C -0.25 -4.33 8.30 -39.26 -0.33 -4.66 16 24 C 0.11 2.06 6.70 -39.15 -0.26 1.80 16 25 O -0.31 -5.15 10.28 -34.32 -0.35 -5.50 16 26 C 0.03 0.35 9.81 101.05 0.99 1.34 16 27 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 28 H 0.05 0.72 7.66 -51.93 -0.40 0.33 16 29 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 30 H 0.13 2.52 6.29 -52.49 -0.33 2.19 16 31 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.03 0.67 6.81 -51.93 -0.35 0.32 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.42 9.03 5.54 -40.82 -0.23 8.81 16 35 H 0.09 0.96 7.95 -51.93 -0.41 0.54 16 36 H 0.09 0.89 7.95 -51.93 -0.41 0.48 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 40 H 0.05 0.57 8.10 -51.93 -0.42 0.14 16 41 H 0.38 1.91 9.12 45.56 0.42 2.33 16 42 H 0.12 1.68 4.97 -52.49 -0.26 1.42 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 45 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -35.07 377.07 -6.71 -41.78 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.66 Total: 8.20 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.01 Total: -8.33 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.40 Total: -39.32 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.10 Total: -24.81 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.07 -6.71 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170101525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.135 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds