Wall clock time and date at job start Tue Mar 31 2020 14:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36101 * 116.99745 * 2 1 4 4 C 1.38535 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.38206 * 120.07049 * 179.71999 * 4 3 2 6 6 C 1.50698 * 119.96784 * 180.29321 * 5 4 3 7 7 C 1.50697 * 109.47167 * 265.25457 * 6 5 4 8 8 H 1.07993 * 120.00116 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31524 * 120.00136 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00326 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46755 * 59.99797 * 11 9 7 13 13 H 1.48495 * 109.47194 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46511 * 300.00011 * 11 9 7 15 15 C 1.38869 * 120.06719 * 0.55100 * 5 4 3 16 16 N 1.39928 * 119.99959 * 179.75089 * 15 5 4 17 17 C 1.46493 * 119.99716 * 179.72260 * 16 15 5 18 18 C 1.50706 * 109.47128 * 179.97438 * 17 16 15 19 19 O 1.20758 * 119.99420 * 359.97438 * 18 17 16 20 20 C 1.50693 * 120.00436 * 179.72172 * 18 17 16 21 21 C 1.52992 * 109.47449 * 179.97438 * 20 18 17 22 22 O 1.42898 * 109.47242 * 180.02562 * 21 20 18 23 23 C 1.38825 * 119.99902 * 359.46630 * 15 5 4 24 24 C 1.38517 * 119.92598 * 0.25667 * 23 15 5 25 25 O 1.35989 * 120.03374 * 179.97438 * 24 23 15 26 26 C 1.42897 * 117.00168 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47301 * 299.98947 * 1 2 3 28 28 H 1.08989 * 109.47785 * 59.99545 * 1 2 3 29 29 H 1.09007 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.96698 * 359.97180 * 4 3 2 31 31 H 1.09001 * 109.46889 * 25.25603 * 6 5 4 32 32 H 1.09000 * 109.47286 * 145.25112 * 6 5 4 33 33 H 0.96998 * 119.99748 * 179.97438 * 10 9 7 34 34 H 0.97005 * 119.99754 * 359.71579 * 16 15 5 35 35 H 1.09001 * 109.47786 * 59.99784 * 17 16 15 36 36 H 1.08998 * 109.47558 * 299.99647 * 17 16 15 37 37 H 1.09001 * 109.47107 * 300.00731 * 20 18 17 38 38 H 1.09006 * 109.47179 * 59.99964 * 20 18 17 39 39 H 1.09001 * 109.47602 * 300.00476 * 21 20 18 40 40 H 1.09001 * 109.46922 * 60.00331 * 21 20 18 41 41 H 0.96702 * 114.00164 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.03876 * 180.28026 * 23 15 5 43 43 H 1.08997 * 109.47470 * 179.97438 * 26 25 24 44 44 H 1.09005 * 109.46557 * 299.99729 * 26 25 24 45 45 H 1.08998 * 109.47661 * 59.99014 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2127 0.0000 4 6 1.2922 2.3745 -0.0005 5 6 1.9180 3.6067 0.0053 6 6 1.0948 4.8690 0.0114 7 6 0.9188 5.3608 -1.4022 8 1 1.3593 4.8142 -2.2228 9 6 0.1954 6.5085 -1.6478 10 7 -0.3415 7.1739 -0.6484 11 14 -0.0235 7.1177 -3.4000 12 1 -0.7166 6.0781 -4.2025 13 1 -0.8355 8.3609 -3.3941 14 1 1.3074 7.3979 -3.9964 15 6 3.3046 3.6829 0.0002 16 7 3.9367 4.9313 0.0008 17 6 5.3994 5.0116 0.0016 18 6 5.8232 6.4578 0.0015 19 8 4.9892 7.3312 0.0005 20 6 7.2874 6.8141 0.0086 21 6 7.4420 8.3362 0.0064 22 8 8.8304 8.6740 0.0124 23 6 4.0636 2.5205 0.0004 24 6 3.4363 1.2856 0.0003 25 8 4.1776 0.1455 -0.0001 26 6 5.5987 0.2957 0.0002 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2137 2.3172 -0.0014 31 1 0.1179 4.6635 0.4490 32 1 1.6037 5.6318 0.6007 33 1 -0.8501 7.9816 -0.8212 34 1 3.4063 5.7435 0.0007 35 1 5.7909 4.5187 -0.8883 36 1 5.7900 4.5182 0.8916 37 1 7.7573 6.4020 0.9015 38 1 7.7665 6.3993 -0.8784 39 1 6.9721 8.7479 -0.8868 40 1 6.9628 8.7513 0.8931 41 1 9.0038 9.6253 0.0119 42 1 5.1420 2.5790 0.0009 43 1 6.0681 -0.6880 0.0004 44 1 5.9060 0.8453 -0.8896 45 1 5.9059 0.8447 0.8903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170101525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:26 Heat of formation + Delta-G solvation = -160.430663 kcal Electronic energy + Delta-G solvation = -27551.091468 eV Core-core repulsion = 23533.614327 eV Total energy + Delta-G solvation = -4017.477140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49363 -40.82612 -39.18090 -38.75091 -37.73059 -35.58491 -35.05082 -32.74045 -32.48578 -30.46711 -29.31911 -28.59408 -27.91626 -26.72870 -24.88949 -24.25415 -22.41375 -21.93899 -20.63456 -19.37277 -18.65904 -18.47229 -18.07288 -17.78983 -17.15476 -16.83909 -16.81711 -16.50207 -16.28976 -15.97826 -15.73052 -15.70873 -15.27882 -15.05073 -14.88321 -14.59505 -14.33773 -14.17595 -13.84492 -13.52952 -13.32564 -13.16074 -12.89280 -12.88249 -12.67584 -12.48440 -12.27391 -12.25129 -12.11045 -12.05692 -11.91860 -11.43134 -11.33915 -10.98698 -10.81452 -10.59051 -10.17684 -9.23273 -8.24310 -7.75278 -6.29789 0.53020 0.80094 0.88002 1.35567 1.37579 1.45453 2.32811 2.38200 2.53140 2.59751 2.90018 2.99516 3.12558 3.61632 3.84312 3.97561 4.05204 4.26158 4.32196 4.37431 4.37892 4.45387 4.45599 4.46667 4.54724 4.55162 4.60428 4.65549 4.76921 4.79012 4.84385 4.85512 4.88534 5.00856 5.19543 5.36136 5.42131 5.68600 5.76882 5.91312 6.20361 6.29910 6.37973 6.53905 6.78817 6.80393 6.82990 6.86995 7.38100 8.90144 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007268 B = 0.004992 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.837092 B = 5608.060618 C = 8913.652465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.329 6.329 3 C 0.023 3.977 4 C -0.132 4.132 5 C -0.139 4.139 6 C 0.076 3.924 7 C -0.515 4.515 8 H 0.048 0.952 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.216 3.784 16 N -0.749 5.749 17 C 0.070 3.930 18 C 0.355 3.645 19 O -0.488 6.488 20 C -0.157 4.157 21 C 0.081 3.919 22 O -0.584 6.584 23 C -0.241 4.241 24 C 0.121 3.879 25 O -0.327 6.327 26 C 0.017 3.983 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.123 0.877 30 H 0.127 0.873 31 H -0.002 1.002 32 H 0.001 0.999 33 H 0.263 0.737 34 H 0.403 0.597 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.400 0.600 42 H 0.166 0.834 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.781 -7.852 2.187 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.244 6.244 3 C -0.023 4.023 4 C -0.152 4.152 5 C -0.143 4.143 6 C 0.039 3.961 7 C -0.553 4.553 8 H 0.066 0.934 9 C -0.189 4.189 10 N -0.568 5.568 11 Si 0.780 3.220 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.199 1.199 15 C 0.112 3.888 16 N -0.383 5.383 17 C -0.054 4.054 18 C 0.232 3.768 19 O -0.363 6.363 20 C -0.194 4.194 21 C 0.003 3.997 22 O -0.393 6.393 23 C -0.265 4.265 24 C 0.075 3.925 25 O -0.241 6.241 26 C -0.077 4.077 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.241 0.759 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.250 0.750 42 H 0.183 0.817 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.537 -8.270 2.230 19.517 hybrid contribution -1.179 2.004 -0.762 2.447 sum 16.358 -6.266 1.468 17.578 Atomic orbital electron populations 1.23160 0.77892 1.04861 1.01173 1.86039 1.21976 1.25860 1.90512 1.18087 0.89710 0.84755 1.09769 1.20707 0.99590 0.90524 1.04340 1.19683 0.92930 0.95611 1.06114 1.17765 0.92870 0.89643 0.95835 1.21252 1.32486 1.08721 0.92840 0.93362 1.25805 0.95348 0.96849 1.00930 1.70067 1.35847 1.18065 1.32773 0.85654 0.78233 0.77788 0.80309 1.19301 1.20652 1.19876 1.17334 0.90322 0.85878 0.95251 1.44710 1.05426 1.05546 1.82570 1.21927 0.81798 0.95873 1.05832 1.25101 0.91852 0.90649 0.69196 1.90510 1.56555 1.52261 1.37011 1.21888 0.92703 0.96567 1.08258 1.21821 0.82193 0.95313 1.00336 1.86339 1.23826 1.31330 1.97761 1.20528 1.00625 0.88586 1.16733 1.17889 0.87752 0.85976 1.00871 1.86113 1.20641 1.28166 1.89199 1.23341 0.76879 1.05249 1.02262 0.92961 0.93407 0.85904 0.85560 0.98411 0.98061 0.92805 0.75920 0.86595 0.85945 0.84796 0.85144 0.94071 0.93722 0.74957 0.81651 0.86409 0.91827 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.81 113.37 1.11 1.77 16 2 O -0.33 -11.65 10.28 -80.73 -0.83 -12.48 16 3 C 0.02 0.87 6.70 22.56 0.15 1.03 16 4 C -0.13 -5.55 8.66 22.33 0.19 -5.36 16 5 C -0.14 -6.35 5.09 -19.72 -0.10 -6.45 16 6 C 0.08 4.13 4.53 29.10 0.13 4.26 16 7 C -0.51 -29.74 9.09 25.60 0.23 -29.50 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.01 0.52 5.46 84.65 0.46 0.98 16 10 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 11 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 15 C 0.22 8.36 6.63 38.14 0.25 8.61 16 16 N -0.75 -27.24 5.61 -343.02 -1.92 -29.16 16 17 C 0.07 1.59 5.33 85.64 0.46 2.04 16 18 C 0.35 8.56 7.23 29.10 0.21 8.77 16 19 O -0.49 -17.38 15.29 -1.44 -0.02 -17.40 16 20 C -0.16 -2.45 6.01 29.84 0.18 -2.27 16 21 C 0.08 1.55 6.34 71.98 0.46 2.00 16 22 O -0.58 -9.61 13.66 -148.98 -2.03 -11.65 16 23 C -0.24 -7.57 8.30 22.48 0.19 -7.39 16 24 C 0.12 4.17 6.70 22.55 0.15 4.33 16 25 O -0.33 -9.79 10.28 -79.46 -0.82 -10.61 16 26 C 0.02 0.30 9.81 113.37 1.11 1.41 16 27 H 0.05 1.39 7.66 -2.39 -0.02 1.38 16 28 H 0.05 1.34 7.66 -2.39 -0.02 1.32 16 29 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 30 H 0.13 5.18 6.29 -2.91 -0.02 5.16 16 31 H 0.00 -0.14 8.05 -2.39 -0.02 -0.16 16 32 H 0.00 0.07 6.81 -2.39 -0.02 0.06 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.40 18.01 5.54 -92.70 -0.51 17.50 16 35 H 0.12 2.03 7.95 -2.39 -0.02 2.01 16 36 H 0.12 1.96 7.95 -2.39 -0.02 1.94 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 40 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16 41 H 0.40 3.32 9.12 -74.06 -0.68 2.64 16 42 H 0.17 3.64 4.97 -2.91 -0.01 3.63 16 43 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 0.97 7.66 -2.38 -0.02 0.95 16 45 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 Total: -1.00 -80.53 377.07 1.71 -78.81 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.16 Total: 27.10 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 5.19 Total: -15.76 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.64 Total: -85.71 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -3.70 Total: -52.14 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -80.53 1.71 -78.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170101525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.616 kcal (2) G-P(sol) polarization free energy of solvation -80.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds