Wall clock time and date at job start Tue Mar 31 2020 13:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.46994 * 2 1 4 4 C 1.34231 * 116.99621 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00266 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99774 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47204 * 300.00267 * 6 4 3 8 8 N 1.46903 * 109.47135 * 180.02562 * 6 4 3 9 9 C 1.46898 * 111.00172 * 86.77467 * 8 6 4 10 10 C 1.52999 * 109.46892 * 207.25258 * 9 8 6 11 11 C 1.53001 * 109.46984 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47004 * 59.99905 * 11 10 9 13 13 C 1.50704 * 109.47302 * 59.99691 * 12 11 10 14 14 H 1.08001 * 119.99560 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00236 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99895 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00180 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46862 * 60.00293 * 17 15 13 19 19 H 1.48501 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47319 * 300.00568 * 17 15 13 21 21 C 1.53008 * 109.47183 * 299.99861 * 12 11 10 22 22 C 1.52992 * 109.47248 * 87.25098 * 9 8 6 23 23 C 1.53001 * 109.46902 * 59.99951 * 6 4 3 24 24 F 1.39908 * 109.46913 * 180.65355 * 23 6 4 25 25 F 1.39894 * 109.47145 * 300.65405 * 23 6 4 26 26 F 1.39898 * 109.46935 * 60.65881 * 23 6 4 27 27 H 1.09004 * 109.47220 * 300.00227 * 1 2 3 28 28 H 1.09002 * 109.47011 * 60.00004 * 1 2 3 29 29 H 1.08999 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47287 * 240.00320 * 2 1 3 31 31 H 1.09002 * 109.47011 * 119.99996 * 2 1 3 32 32 H 1.00897 * 110.99678 * 210.72954 * 8 6 4 33 33 H 1.09003 * 109.47024 * 327.24982 * 9 8 6 34 34 H 1.08998 * 109.47150 * 60.00159 * 10 9 8 35 35 H 1.09003 * 109.47061 * 299.99701 * 10 9 8 36 36 H 1.09000 * 109.47369 * 300.00333 * 11 10 9 37 37 H 1.08997 * 109.47360 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47042 * 179.97438 * 12 11 10 39 39 H 0.97000 * 120.00023 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47005 * 179.97438 * 21 12 11 41 41 H 1.08990 * 109.46907 * 300.00290 * 21 12 11 42 42 H 1.09010 * 109.47272 * 300.00160 * 22 9 8 43 43 H 1.08998 * 109.47270 * 59.99530 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5851 3.4699 -0.8888 8 7 5.3877 2.8605 0.0010 9 6 5.9094 2.7566 -1.3683 10 6 7.2529 2.0248 -1.3479 11 6 7.7959 1.9159 -2.7742 12 6 7.9876 3.3183 -3.3553 13 6 8.9649 4.0860 -2.5029 14 1 9.4055 3.6202 -1.6338 15 6 9.2973 5.3827 -2.8330 16 7 8.7611 5.9498 -3.8916 17 14 10.5092 6.3341 -1.7768 18 1 11.8130 5.6235 -1.7573 19 1 10.6951 7.6952 -2.3408 20 1 9.9825 6.4401 -0.3924 21 6 6.6440 4.0500 -3.3756 22 6 6.1012 4.1590 -1.9488 23 6 3.4487 3.6840 1.2505 24 9 3.9714 4.9817 1.2435 25 9 2.0510 3.7442 1.2575 26 9 3.8922 3.0087 2.3926 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7912 3.6500 0.4827 33 1 5.2026 2.2015 -1.9851 34 1 7.1162 1.0256 -0.9344 35 1 7.9597 2.5799 -0.7311 36 1 7.0890 1.3607 -3.3908 37 1 8.7533 1.3950 -2.7597 38 1 8.3749 3.2407 -4.3712 39 1 8.9947 6.8622 -4.1237 40 1 6.7807 5.0492 -3.7892 41 1 5.9373 3.4948 -3.9921 42 1 5.1440 4.6804 -1.9632 43 1 6.8079 4.7141 -1.3319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:16 Heat of formation + Delta-G solvation = -250.030464 kcal Electronic energy + Delta-G solvation = -29596.884573 eV Core-core repulsion = 25033.665353 eV Total energy + Delta-G solvation = -4563.219220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.30996 -47.82075 -47.74726 -40.67457 -38.46269 -36.80091 -35.22945 -32.47708 -31.91581 -30.16471 -29.56710 -27.04015 -24.94117 -24.60990 -23.03246 -21.63662 -21.23501 -20.74812 -19.13157 -18.88603 -18.56008 -18.30463 -17.32633 -16.58927 -16.19062 -15.70409 -15.13360 -14.97717 -14.62533 -14.52224 -14.36968 -14.17744 -14.13019 -13.89072 -13.88286 -13.70653 -13.51134 -13.15244 -13.03072 -12.69436 -12.41896 -12.06122 -12.01082 -11.81374 -11.44852 -11.29114 -11.06560 -10.88474 -10.73128 -10.69295 -10.62275 -10.37808 -10.13458 -9.77620 -9.27333 -9.12847 -8.74969 -8.40092 -8.20567 -5.97726 -4.02280 1.75111 2.17774 2.57854 3.31228 3.36653 3.39556 3.41882 3.56870 3.82971 4.31575 4.44052 4.48002 4.67040 4.71166 4.73569 5.02215 5.31831 5.35889 5.41889 5.51573 5.65015 5.69888 5.89732 6.10608 6.19730 6.28933 6.33131 6.45876 6.66798 6.68393 6.78830 6.88718 7.05763 7.18267 7.29582 7.33913 7.49891 7.58507 7.73218 7.91383 8.12949 8.47996 9.00591 9.61355 11.08033 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.003903 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.059884 B = 7171.935480 C = 7976.719932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.355 6.355 4 C 0.463 3.537 5 O -0.453 6.453 6 C 0.052 3.948 7 H 0.125 0.875 8 N -0.656 5.656 9 C 0.097 3.903 10 C -0.088 4.088 11 C -0.107 4.107 12 C 0.043 3.957 13 C -0.502 4.502 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.884 3.116 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.103 4.103 22 C -0.131 4.131 23 C 0.461 3.539 24 F -0.171 7.171 25 F -0.167 7.167 26 F -0.169 7.169 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.361 0.639 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.025 0.975 39 H 0.259 0.741 40 H 0.093 0.907 41 H 0.014 0.986 42 H 0.030 0.970 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.126 -7.132 8.046 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.273 6.273 4 C 0.300 3.700 5 O -0.336 6.336 6 C -0.061 4.061 7 H 0.143 0.857 8 N -0.292 5.292 9 C -0.011 4.011 10 C -0.126 4.126 11 C -0.145 4.145 12 C 0.024 3.976 13 C -0.540 4.540 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.713 3.287 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.142 4.142 22 C -0.170 4.170 23 C 0.406 3.594 24 F -0.152 7.152 25 F -0.149 7.149 26 F -0.150 7.150 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.184 0.816 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.901 -7.954 8.104 19.539 hybrid contribution 0.468 1.558 0.409 1.677 sum -15.433 -6.396 8.513 18.750 Atomic orbital electron populations 1.21806 0.92436 1.02964 1.03684 1.23072 0.95437 0.79721 1.02846 1.86522 1.23643 1.32887 1.84212 1.22791 0.81025 0.91449 0.74694 1.90703 1.60156 1.41348 1.41371 1.22211 0.94985 0.91738 0.97213 0.85748 1.60403 0.98091 1.49681 1.20980 1.21800 0.97469 0.97452 0.84364 1.21305 0.94409 0.98674 0.98262 1.21566 0.98521 0.99579 0.94813 1.18701 0.92930 0.89617 0.96310 1.21140 1.24252 0.97583 1.11071 0.92589 1.24939 0.96127 0.97782 0.95108 1.69851 1.43611 1.13915 1.25752 0.86782 0.82068 0.79120 0.80779 1.20385 1.21483 1.20319 1.21464 0.96426 1.03696 0.92580 1.22118 0.99058 0.94933 1.00868 1.20037 0.75917 0.78065 0.85397 1.93249 1.86372 1.38874 1.96708 1.93252 1.28673 1.96249 1.96691 1.93249 1.89078 1.79685 1.52975 0.91382 0.91353 0.90165 0.90970 0.91036 0.81556 0.91673 0.93189 0.90949 0.94896 0.93151 0.95698 0.93105 0.88886 0.96741 0.95162 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.35 9.17 -39.26 -0.36 -4.71 16 4 C 0.46 6.58 6.84 36.01 0.25 6.83 16 5 O -0.45 -7.62 16.08 -18.75 -0.30 -7.92 16 6 C 0.05 0.70 2.34 -68.86 -0.16 0.54 16 7 H 0.13 1.49 7.28 -51.93 -0.38 1.11 16 8 N -0.66 -10.11 5.50 -100.95 -0.56 -10.66 16 9 C 0.10 1.68 2.16 -67.72 -0.15 1.53 16 10 C -0.09 -1.68 5.30 -26.73 -0.14 -1.82 16 11 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 12 C 0.04 1.01 2.59 -91.76 -0.24 0.78 16 13 C -0.50 -12.91 6.61 -34.44 -0.23 -13.14 16 14 H 0.06 1.44 6.71 -52.49 -0.35 1.08 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 16 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 17 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.10 -2.28 5.24 -26.70 -0.14 -2.42 16 22 C -0.13 -2.51 4.94 -26.71 -0.13 -2.64 16 23 C 0.46 5.86 2.67 37.16 0.10 5.96 16 24 F -0.17 -2.20 16.63 2.25 0.04 -2.17 16 25 F -0.17 -2.04 16.18 2.25 0.04 -2.00 16 26 F -0.17 -2.30 16.95 2.25 0.04 -2.26 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.36 5.39 7.48 -39.29 -0.29 5.09 16 33 H 0.07 1.13 7.68 -51.93 -0.40 0.73 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.03 0.52 7.62 -51.92 -0.40 0.12 16 43 H 0.08 1.69 7.20 -51.93 -0.37 1.32 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -28.20 354.96 -6.83 -35.03 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.21 Total: 2.55 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.47 Total: -4.98 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.07 Total: -34.59 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.66 Total: -12.64 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.43 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.20 -6.83 -35.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.999 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds