Wall clock time and date at job start Tue Mar 31 2020 13:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.46994 * 2 1 4 4 C 1.34231 * 116.99621 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00266 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99774 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47204 * 300.00267 * 6 4 3 8 8 N 1.46903 * 109.47135 * 180.02562 * 6 4 3 9 9 C 1.46898 * 111.00172 * 86.77467 * 8 6 4 10 10 C 1.52999 * 109.46892 * 207.25258 * 9 8 6 11 11 C 1.53001 * 109.46984 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47004 * 59.99905 * 11 10 9 13 13 C 1.50704 * 109.47302 * 59.99691 * 12 11 10 14 14 H 1.08001 * 119.99560 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00236 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99895 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00180 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46862 * 60.00293 * 17 15 13 19 19 H 1.48501 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47319 * 300.00568 * 17 15 13 21 21 C 1.53008 * 109.47183 * 299.99861 * 12 11 10 22 22 C 1.52992 * 109.47248 * 87.25098 * 9 8 6 23 23 C 1.53001 * 109.46902 * 59.99951 * 6 4 3 24 24 F 1.39908 * 109.46913 * 180.65355 * 23 6 4 25 25 F 1.39894 * 109.47145 * 300.65405 * 23 6 4 26 26 F 1.39898 * 109.46935 * 60.65881 * 23 6 4 27 27 H 1.09004 * 109.47220 * 300.00227 * 1 2 3 28 28 H 1.09002 * 109.47011 * 60.00004 * 1 2 3 29 29 H 1.08999 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47287 * 240.00320 * 2 1 3 31 31 H 1.09002 * 109.47011 * 119.99996 * 2 1 3 32 32 H 1.00897 * 110.99678 * 210.72954 * 8 6 4 33 33 H 1.09003 * 109.47024 * 327.24982 * 9 8 6 34 34 H 1.08998 * 109.47150 * 60.00159 * 10 9 8 35 35 H 1.09003 * 109.47061 * 299.99701 * 10 9 8 36 36 H 1.09000 * 109.47369 * 300.00333 * 11 10 9 37 37 H 1.08997 * 109.47360 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47042 * 179.97438 * 12 11 10 39 39 H 0.97000 * 120.00023 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47005 * 179.97438 * 21 12 11 41 41 H 1.08990 * 109.46907 * 300.00290 * 21 12 11 42 42 H 1.09010 * 109.47272 * 300.00160 * 22 9 8 43 43 H 1.08998 * 109.47270 * 59.99530 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5851 3.4699 -0.8888 8 7 5.3877 2.8605 0.0010 9 6 5.9094 2.7566 -1.3683 10 6 7.2529 2.0248 -1.3479 11 6 7.7959 1.9159 -2.7742 12 6 7.9876 3.3183 -3.3553 13 6 8.9649 4.0860 -2.5029 14 1 9.4055 3.6202 -1.6338 15 6 9.2973 5.3827 -2.8330 16 7 8.7611 5.9498 -3.8916 17 14 10.5092 6.3341 -1.7768 18 1 11.8130 5.6235 -1.7573 19 1 10.6951 7.6952 -2.3408 20 1 9.9825 6.4401 -0.3924 21 6 6.6440 4.0500 -3.3756 22 6 6.1012 4.1590 -1.9488 23 6 3.4487 3.6840 1.2505 24 9 3.9714 4.9817 1.2435 25 9 2.0510 3.7442 1.2575 26 9 3.8922 3.0087 2.3926 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7912 3.6500 0.4827 33 1 5.2026 2.2015 -1.9851 34 1 7.1162 1.0256 -0.9344 35 1 7.9597 2.5799 -0.7311 36 1 7.0890 1.3607 -3.3908 37 1 8.7533 1.3950 -2.7597 38 1 8.3749 3.2407 -4.3712 39 1 8.9947 6.8622 -4.1237 40 1 6.7807 5.0492 -3.7892 41 1 5.9373 3.4948 -3.9921 42 1 5.1440 4.6804 -1.9632 43 1 6.8079 4.7141 -1.3319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:15 Heat of formation + Delta-G solvation = -264.972128 kcal Electronic energy + Delta-G solvation = -29597.532492 eV Core-core repulsion = 25033.665353 eV Total energy + Delta-G solvation = -4563.867139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.33046 -48.83584 -48.77050 -41.74319 -39.93652 -37.91839 -36.62507 -34.23870 -32.77435 -31.55257 -31.21245 -28.53007 -26.48617 -25.91488 -23.83430 -23.21506 -22.62456 -21.94230 -20.70937 -19.97428 -19.59666 -19.53164 -18.38882 -17.75392 -17.54540 -17.08939 -16.69269 -16.36222 -16.05544 -15.63262 -15.46330 -15.20994 -15.15924 -15.04932 -14.93415 -14.89883 -14.86393 -14.54947 -14.45883 -13.70135 -13.57057 -13.51792 -13.19996 -12.96012 -12.82783 -12.71622 -12.60466 -12.52104 -12.45574 -12.23771 -11.82244 -11.73830 -11.55592 -11.51290 -11.02287 -10.78872 -10.61407 -10.32037 -9.68239 -8.00615 -6.10426 0.67727 1.19941 1.44099 1.45656 1.51598 1.53574 2.33248 2.47941 2.49562 2.82631 3.23832 3.27731 3.51630 3.66370 3.93358 4.01595 4.07183 4.13360 4.34920 4.37013 4.59429 4.67642 4.74233 4.79631 4.84523 4.94082 4.98586 5.05739 5.09914 5.24299 5.30789 5.36122 5.45240 5.56237 5.64497 5.72010 5.80364 5.93767 6.04063 6.24947 6.49102 6.54005 6.99280 7.55666 9.03658 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.003903 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.059884 B = 7171.935480 C = 7976.719932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.467 3.533 5 O -0.484 6.484 6 C 0.050 3.950 7 H 0.145 0.855 8 N -0.660 5.660 9 C 0.111 3.889 10 C -0.082 4.082 11 C -0.101 4.101 12 C 0.038 3.962 13 C -0.506 4.506 14 H 0.054 0.946 15 C 0.017 3.983 16 N -0.918 5.918 17 Si 0.938 3.062 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.270 1.270 21 C -0.099 4.099 22 C -0.121 4.121 23 C 0.469 3.531 24 F -0.171 7.171 25 F -0.161 7.161 26 F -0.174 7.174 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.364 0.636 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.046 0.954 38 H -0.011 1.011 39 H 0.257 0.743 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.053 0.947 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 -7.605 9.146 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.306 3.694 5 O -0.369 6.369 6 C -0.064 4.064 7 H 0.163 0.837 8 N -0.295 5.295 9 C 0.003 3.997 10 C -0.120 4.120 11 C -0.139 4.139 12 C 0.020 3.980 13 C -0.545 4.545 14 H 0.072 0.928 15 C -0.181 4.181 16 N -0.558 5.558 17 Si 0.765 3.235 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.195 1.195 21 C -0.138 4.138 22 C -0.160 4.160 23 C 0.414 3.586 24 F -0.152 7.152 25 F -0.143 7.143 26 F -0.156 7.156 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.188 0.812 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.007 0.993 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.461 -8.430 9.221 21.470 hybrid contribution 0.894 1.655 0.042 1.881 sum -16.566 -6.775 9.263 20.153 Atomic orbital electron populations 1.21832 0.90091 1.04503 1.03823 1.23397 0.97245 0.78439 1.02911 1.86527 1.22423 1.34557 1.83570 1.22863 0.81487 0.91232 0.73850 1.90693 1.60924 1.42244 1.43042 1.22282 0.93662 0.91970 0.98440 0.83740 1.60256 0.99562 1.50113 1.19540 1.21518 0.96855 0.95855 0.85481 1.21199 0.94950 0.99114 0.96746 1.21463 0.99021 0.97477 0.95916 1.18693 0.93396 0.91737 0.94183 1.21387 1.24348 0.97767 1.10958 0.92826 1.25566 0.97654 0.98753 0.96119 1.69992 1.44793 1.13965 1.27073 0.85918 0.80168 0.77735 0.79666 1.20304 1.21629 1.19514 1.21314 0.96050 1.01705 0.94745 1.21973 0.99378 0.96244 0.98390 1.19842 0.76079 0.77853 0.84833 1.93255 1.86420 1.38837 1.96672 1.93266 1.28167 1.96209 1.96627 1.93243 1.89191 1.79835 1.53295 0.91276 0.91130 0.87929 0.90904 0.91090 0.81217 0.90943 0.92383 0.92466 0.93401 0.93481 0.99308 0.93410 0.92097 0.95295 0.92812 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.35 -7.93 9.17 -51.43 -0.47 -8.40 16 4 C 0.47 12.36 6.84 71.24 0.49 12.84 16 5 O -0.48 -15.52 16.08 21.97 0.35 -15.17 16 6 C 0.05 1.22 2.34 44.17 0.10 1.33 16 7 H 0.15 3.02 7.28 -2.39 -0.02 3.00 16 8 N -0.66 -19.08 5.50 -473.31 -2.60 -21.69 16 9 C 0.11 3.66 2.16 44.91 0.10 3.76 16 10 C -0.08 -3.01 5.30 30.59 0.16 -2.85 16 11 C -0.10 -4.04 5.41 30.60 0.17 -3.87 16 12 C 0.04 1.84 2.59 -11.54 -0.03 1.81 16 13 C -0.51 -26.29 6.61 25.60 0.17 -26.12 16 14 H 0.05 2.76 6.71 -2.91 -0.02 2.74 16 15 C 0.02 0.91 5.30 84.65 0.45 1.36 16 16 N -0.92 -51.46 11.32 21.44 0.24 -51.22 16 17 Si 0.94 42.68 29.54 68.60 2.03 44.70 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 C -0.10 -4.39 5.24 30.61 0.16 -4.23 16 22 C -0.12 -4.48 4.94 30.61 0.15 -4.33 16 23 C 0.47 10.92 2.67 71.98 0.19 11.11 16 24 F -0.17 -4.04 16.63 44.97 0.75 -3.30 16 25 F -0.16 -3.54 16.18 44.97 0.73 -2.82 16 26 F -0.17 -4.46 16.95 44.97 0.76 -3.69 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.36 10.25 7.48 -89.70 -0.67 9.58 16 33 H 0.07 2.33 7.68 -2.39 -0.02 2.31 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 2.27 6.62 -2.39 -0.02 2.25 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 40 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.72 7.62 -2.38 -0.02 1.71 16 43 H 0.06 2.39 7.20 -2.39 -0.02 2.37 16 Total: -1.00 -60.20 354.96 5.44 -54.75 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.36 Total: 15.51 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 3.29 Total: -8.69 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.36 Total: -72.91 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.12 Total: -23.57 kcal Atomic # 9 Polarization: -12.04 SS G_CDS: 2.24 Total: -9.80 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -60.20 5.44 -54.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.218 kcal (2) G-P(sol) polarization free energy of solvation -60.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds