Wall clock time and date at job start Tue Mar 31 2020 13:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45192 * 109.46952 * 2 1 4 4 C 1.34231 * 116.99877 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99824 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47176 * 60.00034 * 6 4 3 8 8 N 1.46896 * 109.47006 * 179.97438 * 6 4 3 9 9 C 1.46906 * 111.00042 * 204.99709 * 8 6 4 10 10 C 1.53002 * 109.47255 * 204.99965 * 9 8 6 11 11 C 1.53000 * 109.47233 * 300.00730 * 10 9 8 12 12 C 1.52997 * 109.47060 * 299.99657 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13 21 21 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 22 22 C 1.52997 * 109.46770 * 85.00472 * 9 8 6 23 23 C 1.53002 * 109.47507 * 300.00056 * 6 4 3 24 24 F 1.39897 * 109.46883 * 300.00453 * 23 6 4 25 25 F 1.39909 * 109.46893 * 59.99950 * 23 6 4 26 26 F 1.39893 * 109.47661 * 179.97438 * 23 6 4 27 27 H 1.09005 * 109.46854 * 60.00112 * 1 2 3 28 28 H 1.09004 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 299.99761 * 1 2 3 30 30 H 1.09002 * 109.46939 * 240.00710 * 2 1 3 31 31 H 1.08994 * 109.47098 * 120.00578 * 2 1 3 32 32 H 1.00897 * 111.00014 * 81.04975 * 8 6 4 33 33 H 1.08993 * 109.47034 * 325.00653 * 9 8 6 34 34 H 1.08992 * 109.47063 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46733 * 60.00072 * 10 9 8 36 36 H 1.09002 * 109.47398 * 59.99826 * 11 10 9 37 37 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47486 * 180.02562 * 21 12 11 41 41 H 1.09002 * 109.46716 * 60.00091 * 21 12 11 42 42 H 1.09002 * 109.47153 * 179.97438 * 22 9 8 43 43 H 1.09001 * 109.47289 * 300.00076 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5844 3.4693 0.8912 8 7 5.3876 2.8605 0.0023 9 6 5.9780 4.0742 0.5824 10 6 7.3936 4.2651 0.0343 11 6 8.2515 3.0534 0.4044 12 6 8.3086 2.9150 1.9270 13 6 9.1541 1.7220 2.2916 14 1 9.6059 1.1227 1.5150 15 6 9.3517 1.3962 3.6167 16 7 8.8020 2.1263 4.5624 17 14 10.3991 -0.0830 4.0687 18 1 11.8146 0.3402 4.2191 19 1 9.9159 -0.6591 5.3492 20 1 10.2997 -1.1060 2.9968 21 6 6.8930 2.7242 2.4753 22 6 6.0351 3.9358 2.1051 23 6 3.4496 3.6848 -1.2480 24 9 3.8811 3.0021 -2.3903 25 9 2.0524 3.7580 -1.2485 26 9 3.9838 4.9777 -1.2472 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.7418 2.6954 -0.9279 33 1 5.3668 4.9373 0.3188 34 1 7.8317 5.1653 0.4651 35 1 7.3529 4.3636 -1.0505 36 1 7.8135 2.1529 -0.0262 37 1 9.2601 3.1896 0.0142 38 1 8.7466 3.8155 2.3575 39 1 8.9413 1.8973 5.4946 40 1 6.9337 2.6260 3.5601 41 1 6.4550 1.8237 2.0447 42 1 6.4735 4.8361 2.5356 43 1 5.0266 3.7998 2.4957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:19 Heat of formation + Delta-G solvation = -247.762434 kcal Electronic energy + Delta-G solvation = -29738.137358 eV Core-core repulsion = 25175.016487 eV Total energy + Delta-G solvation = -4563.120870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.36704 -47.88806 -47.79164 -40.61210 -38.56369 -36.74214 -34.93243 -32.60931 -31.86262 -29.90644 -29.74334 -27.45426 -24.93192 -24.42339 -23.04684 -21.68717 -21.06532 -20.72881 -19.06875 -18.71109 -18.64074 -18.05254 -17.34902 -16.61562 -16.43254 -16.24341 -15.07785 -14.79767 -14.57905 -14.44801 -14.41232 -14.23543 -14.19628 -13.98648 -13.93853 -13.81282 -13.31275 -13.01270 -12.82270 -12.69731 -12.45616 -12.09960 -11.97900 -11.78392 -11.54000 -11.32510 -11.26299 -10.81886 -10.67540 -10.64897 -10.53460 -10.29162 -10.08861 -9.74614 -9.27954 -8.93599 -8.57060 -8.41257 -8.16716 -5.87259 -3.91738 1.80236 2.18255 2.60891 3.37085 3.43627 3.46095 3.48266 3.57530 3.79641 4.18559 4.50335 4.53427 4.68831 4.75167 4.78969 5.08632 5.21505 5.38341 5.42672 5.44790 5.56722 5.58801 5.73923 6.01552 6.19001 6.23011 6.26566 6.34860 6.41662 6.71621 6.80078 6.93750 6.99415 7.17146 7.27999 7.51667 7.62592 7.67964 7.88524 8.20593 8.29973 8.61710 9.11883 9.71911 11.18222 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.004155 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.925897 B = 6737.046785 C = 7954.396450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.356 6.356 4 C 0.464 3.536 5 O -0.449 6.449 6 C 0.061 3.939 7 H 0.156 0.844 8 N -0.629 5.629 9 C 0.081 3.919 10 C -0.117 4.117 11 C -0.106 4.106 12 C 0.053 3.947 13 C -0.506 4.506 14 H 0.052 0.948 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.886 3.114 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.102 4.102 22 C -0.108 4.108 23 C 0.424 3.576 24 F -0.179 7.179 25 F -0.171 7.171 26 F -0.173 7.173 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.356 0.644 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.019 0.981 39 H 0.257 0.743 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 3.027 -10.603 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.273 6.273 4 C 0.301 3.699 5 O -0.331 6.331 6 C -0.054 4.054 7 H 0.173 0.827 8 N -0.262 5.262 9 C -0.027 4.027 10 C -0.155 4.155 11 C -0.144 4.144 12 C 0.034 3.966 13 C -0.544 4.544 14 H 0.070 0.930 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.140 4.140 22 C -0.146 4.146 23 C 0.366 3.634 24 F -0.160 7.160 25 F -0.153 7.153 26 F -0.154 7.154 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.179 0.821 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.301 2.345 -9.851 19.190 hybrid contribution 0.341 -0.194 -0.572 0.694 sum -15.960 2.151 -10.423 19.183 Atomic orbital electron populations 1.21804 0.92487 1.02956 1.03595 1.23079 0.95366 0.79679 1.02986 1.86506 1.23590 1.32934 1.84268 1.22617 0.81136 0.91206 0.74923 1.90754 1.60076 1.41204 1.41096 1.22502 0.93883 0.91997 0.97026 0.82674 1.60187 0.97605 1.39844 1.28594 1.21961 0.95559 0.87755 0.97432 1.21739 0.94239 1.01051 0.98447 1.21594 0.96794 0.95403 1.00579 1.18593 0.92940 0.96489 0.88532 1.21231 1.29539 1.12051 0.91600 0.92979 1.24934 0.95895 0.96447 0.96692 1.69885 1.44506 1.39136 0.99657 0.86687 0.80573 0.83477 0.77796 1.20922 1.21410 1.20010 1.21497 0.95124 0.94110 1.03275 1.21696 0.99583 1.01710 0.91654 1.21695 0.76163 0.78629 0.86896 1.93205 1.89515 1.79476 1.53810 1.93244 1.29098 1.96202 1.96710 1.93193 1.85913 1.39652 1.96672 0.91482 0.90175 0.91348 0.91078 0.90762 0.82084 0.93225 0.91238 0.93534 0.92407 0.93847 0.96299 0.93313 0.89763 0.93103 0.92231 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.44 9.19 -39.26 -0.36 -4.80 16 4 C 0.46 6.70 7.06 36.01 0.25 6.96 16 5 O -0.45 -7.95 16.18 -18.74 -0.30 -8.25 16 6 C 0.06 0.80 2.50 -68.86 -0.17 0.63 16 7 H 0.16 1.78 7.11 -51.93 -0.37 1.41 16 8 N -0.63 -9.61 4.06 -100.95 -0.41 -10.02 16 9 C 0.08 1.24 2.45 -67.71 -0.17 1.08 16 10 C -0.12 -1.90 5.30 -26.73 -0.14 -2.04 16 11 C -0.11 -2.15 4.98 -26.73 -0.13 -2.29 16 12 C 0.05 1.29 2.10 -91.78 -0.19 1.10 16 13 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.10 -2.37 4.82 -26.73 -0.13 -2.49 16 22 C -0.11 -1.96 5.52 -26.73 -0.15 -2.11 16 23 C 0.42 5.13 2.75 37.16 0.10 5.23 16 24 F -0.18 -2.29 16.31 2.25 0.04 -2.26 16 25 F -0.17 -2.03 16.21 2.25 0.04 -2.00 16 26 F -0.17 -2.09 15.05 2.25 0.03 -2.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.36 5.27 7.34 -39.29 -0.29 4.99 16 33 H 0.05 0.67 5.86 -51.93 -0.30 0.37 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 36 H 0.06 1.21 7.48 -51.93 -0.39 0.82 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 40 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 41 H 0.05 1.25 7.60 -51.93 -0.39 0.85 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.64 7.43 -51.93 -0.39 0.26 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -30.29 353.35 -6.75 -37.05 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.21 Total: 1.81 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.50 Total: -6.53 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.22 Total: -35.07 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.66 Total: -13.05 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.11 Total: -6.30 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.29 -6.75 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.717 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds