Wall clock time and date at job start Tue Mar 31 2020 13:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45192 * 109.46952 * 2 1 4 4 C 1.34231 * 116.99877 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00072 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99824 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47176 * 60.00034 * 6 4 3 8 8 N 1.46896 * 109.47006 * 179.97438 * 6 4 3 9 9 C 1.46906 * 111.00042 * 204.99709 * 8 6 4 10 10 C 1.53002 * 109.47255 * 204.99965 * 9 8 6 11 11 C 1.53000 * 109.47233 * 300.00730 * 10 9 8 12 12 C 1.52997 * 109.47060 * 299.99657 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13 21 21 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 22 22 C 1.52997 * 109.46770 * 85.00472 * 9 8 6 23 23 C 1.53002 * 109.47507 * 300.00056 * 6 4 3 24 24 F 1.39897 * 109.46883 * 300.00453 * 23 6 4 25 25 F 1.39909 * 109.46893 * 59.99950 * 23 6 4 26 26 F 1.39893 * 109.47661 * 179.97438 * 23 6 4 27 27 H 1.09005 * 109.46854 * 60.00112 * 1 2 3 28 28 H 1.09004 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 299.99761 * 1 2 3 30 30 H 1.09002 * 109.46939 * 240.00710 * 2 1 3 31 31 H 1.08994 * 109.47098 * 120.00578 * 2 1 3 32 32 H 1.00897 * 111.00014 * 81.04975 * 8 6 4 33 33 H 1.08993 * 109.47034 * 325.00653 * 9 8 6 34 34 H 1.08992 * 109.47063 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46733 * 60.00072 * 10 9 8 36 36 H 1.09002 * 109.47398 * 59.99826 * 11 10 9 37 37 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47486 * 180.02562 * 21 12 11 41 41 H 1.09002 * 109.46716 * 60.00091 * 21 12 11 42 42 H 1.09002 * 109.47153 * 179.97438 * 22 9 8 43 43 H 1.09001 * 109.47289 * 300.00076 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5844 3.4693 0.8912 8 7 5.3876 2.8605 0.0023 9 6 5.9780 4.0742 0.5824 10 6 7.3936 4.2651 0.0343 11 6 8.2515 3.0534 0.4044 12 6 8.3086 2.9150 1.9270 13 6 9.1541 1.7220 2.2916 14 1 9.6059 1.1227 1.5150 15 6 9.3517 1.3962 3.6167 16 7 8.8020 2.1263 4.5624 17 14 10.3991 -0.0830 4.0687 18 1 11.8146 0.3402 4.2191 19 1 9.9159 -0.6591 5.3492 20 1 10.2997 -1.1060 2.9968 21 6 6.8930 2.7242 2.4753 22 6 6.0351 3.9358 2.1051 23 6 3.4496 3.6848 -1.2480 24 9 3.8811 3.0021 -2.3903 25 9 2.0524 3.7580 -1.2485 26 9 3.9838 4.9777 -1.2472 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.7418 2.6954 -0.9279 33 1 5.3668 4.9373 0.3188 34 1 7.8317 5.1653 0.4651 35 1 7.3529 4.3636 -1.0505 36 1 7.8135 2.1529 -0.0262 37 1 9.2601 3.1896 0.0142 38 1 8.7466 3.8155 2.3575 39 1 8.9413 1.8973 5.4946 40 1 6.9337 2.6260 3.5601 41 1 6.4550 1.8237 2.0447 42 1 6.4735 4.8361 2.5356 43 1 5.0266 3.7998 2.4957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:18 Heat of formation + Delta-G solvation = -264.652411 kcal Electronic energy + Delta-G solvation = -29738.869762 eV Core-core repulsion = 25175.016487 eV Total energy + Delta-G solvation = -4563.853275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.32605 -48.84779 -48.74017 -41.71301 -39.95093 -37.86987 -36.41213 -34.40926 -32.72320 -31.43596 -31.32090 -28.81968 -26.40162 -25.84405 -23.89187 -23.21683 -22.36969 -22.13417 -20.30825 -19.72603 -19.67954 -19.30012 -18.44491 -18.34350 -17.70267 -17.42868 -16.62326 -16.21722 -15.81236 -15.57759 -15.50242 -15.39953 -15.19410 -15.05192 -14.89280 -14.84332 -14.65012 -14.43304 -14.14130 -13.85476 -13.61996 -13.46187 -13.26427 -12.98631 -12.88385 -12.80964 -12.54864 -12.52025 -12.49444 -12.05589 -11.88039 -11.66998 -11.60248 -11.56129 -11.13492 -10.72209 -10.40468 -10.25553 -9.68487 -8.01976 -6.13886 0.72204 1.18034 1.39370 1.40857 1.50616 1.59894 2.46009 2.47370 2.51686 2.84165 3.16729 3.24298 3.53609 3.70969 3.92823 4.00533 4.06759 4.08675 4.25755 4.34380 4.63188 4.73463 4.79533 4.85253 4.89665 4.91878 4.93506 5.09773 5.11229 5.20778 5.33708 5.36074 5.48595 5.64886 5.65993 5.73821 5.83389 6.01154 6.20940 6.34133 6.54227 6.54789 6.99330 7.52652 9.01080 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.004155 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.925897 B = 6737.046785 C = 7954.396450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.466 3.534 5 O -0.490 6.490 6 C 0.062 3.938 7 H 0.176 0.824 8 N -0.649 5.649 9 C 0.091 3.909 10 C -0.111 4.111 11 C -0.098 4.098 12 C 0.049 3.951 13 C -0.530 4.530 14 H 0.043 0.957 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 0.944 3.056 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.089 4.089 22 C -0.103 4.103 23 C 0.435 3.565 24 F -0.183 7.183 25 F -0.167 7.167 26 F -0.168 7.168 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.359 0.641 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.038 0.962 38 H -0.009 1.009 39 H 0.257 0.743 40 H 0.045 0.955 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.005 3.769 -11.693 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.269 6.269 4 C 0.306 3.694 5 O -0.375 6.375 6 C -0.053 4.053 7 H 0.193 0.807 8 N -0.283 5.283 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.135 4.135 12 C 0.031 3.969 13 C -0.569 4.569 14 H 0.061 0.939 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.770 3.230 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.127 4.127 22 C -0.141 4.141 23 C 0.378 3.622 24 F -0.164 7.164 25 F -0.149 7.149 26 F -0.149 7.149 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.009 0.991 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.757 3.100 -10.954 21.094 hybrid contribution 0.759 -0.476 -0.220 0.923 sum -16.998 2.624 -11.174 20.511 Atomic orbital electron populations 1.21824 0.89877 1.04474 1.03909 1.23381 0.97376 0.78598 1.02722 1.86517 1.22439 1.34322 1.83596 1.22908 0.81475 0.91342 0.73689 1.90742 1.61029 1.42548 1.43220 1.22520 0.92662 0.91623 0.98455 0.80714 1.60026 0.99071 1.40120 1.29059 1.21829 0.95728 0.89027 0.95110 1.21689 0.93791 0.98916 1.00503 1.21409 0.97616 0.97291 0.97219 1.18578 0.92973 0.93858 0.91501 1.21656 1.30250 1.13227 0.91722 0.93903 1.25643 0.97092 0.98962 0.96765 1.70021 1.45334 1.40374 0.99757 0.85775 0.79334 0.80423 0.77426 1.20068 1.20981 1.19912 1.21188 0.95324 0.95813 1.00372 1.21594 0.99362 0.98986 0.94198 1.21343 0.76218 0.78511 0.86140 1.93205 1.89585 1.79638 1.53982 1.93256 1.28787 1.96178 1.96648 1.93199 1.85878 1.39242 1.96603 0.91052 0.88064 0.91075 0.91132 0.91393 0.81748 0.89898 0.90663 0.90452 0.93295 0.94301 0.99081 0.93366 0.93669 0.95114 0.92126 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 10.29 71.98 0.74 -1.04 16 2 C 0.05 1.02 6.19 71.98 0.45 1.47 16 3 O -0.35 -8.32 9.19 -51.42 -0.47 -8.80 16 4 C 0.47 13.05 7.06 71.24 0.50 13.55 16 5 O -0.49 -17.42 16.18 21.99 0.36 -17.06 16 6 C 0.06 1.50 2.50 44.17 0.11 1.61 16 7 H 0.18 3.48 7.11 -2.39 -0.02 3.46 16 8 N -0.65 -18.74 4.06 -473.31 -1.92 -20.66 16 9 C 0.09 2.57 2.45 44.91 0.11 2.68 16 10 C -0.11 -3.36 5.30 30.60 0.16 -3.20 16 11 C -0.10 -3.95 4.98 30.59 0.15 -3.80 16 12 C 0.05 2.47 2.10 -11.54 -0.02 2.45 16 13 C -0.53 -30.37 8.56 25.60 0.22 -30.15 16 14 H 0.04 2.46 7.74 -2.91 -0.02 2.43 16 15 C 0.01 0.77 5.30 84.65 0.45 1.22 16 16 N -0.91 -54.07 11.32 21.45 0.24 -53.83 16 17 Si 0.94 45.48 29.54 68.60 2.03 47.50 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 21 C -0.09 -4.20 4.82 30.60 0.15 -4.06 16 22 C -0.10 -3.61 5.52 30.60 0.17 -3.45 16 23 C 0.44 9.35 2.75 71.98 0.20 9.55 16 24 F -0.18 -4.29 16.31 44.97 0.73 -3.55 16 25 F -0.17 -3.51 16.21 44.97 0.73 -2.78 16 26 F -0.17 -3.43 15.05 44.97 0.68 -2.76 16 27 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 31 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 32 H 0.36 10.00 7.34 -89.70 -0.66 9.34 16 33 H 0.08 1.88 5.86 -2.39 -0.01 1.87 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 36 H 0.05 2.05 7.48 -2.39 -0.02 2.03 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 40 H 0.04 2.48 6.07 -2.39 -0.01 2.46 16 41 H 0.03 1.54 7.60 -2.39 -0.02 1.52 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 Total: -1.00 -67.33 353.35 6.13 -61.20 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.38 Total: 13.91 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 3.38 Total: -13.17 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -1.68 Total: -74.49 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.12 Total: -25.86 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 2.14 Total: -9.09 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.33 6.13 -61.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.453 kcal (2) G-P(sol) polarization free energy of solvation -67.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds