Wall clock time and date at job start Tue Mar 31 2020 14:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47016 * 105.95350 * 179.97438 * 3 2 1 5 5 C 1.47382 * 127.19324 * 180.02562 * 4 3 2 6 6 O 1.21605 * 120.00273 * 179.97438 * 5 4 3 7 7 N 1.34785 * 119.99761 * 359.97438 * 5 4 3 8 8 C 1.46495 * 119.99637 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46631 * 180.02562 * 8 7 5 10 10 O 1.21278 * 120.00291 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99664 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99968 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47014 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46868 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47174 * 180.02562 * 14 13 12 16 16 C 1.36940 * 120.00233 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99369 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99920 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00376 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99685 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47058 * 89.99591 * 20 18 16 22 22 H 1.48497 * 109.46965 * 209.99762 * 20 18 16 23 23 H 1.48498 * 109.46799 * 329.99568 * 20 18 16 24 24 C 1.36413 * 105.61629 * 359.97438 * 4 3 2 25 25 C 1.50704 * 125.80277 * 180.02562 * 24 4 3 26 26 O 1.33655 * 108.39748 * 359.75719 * 24 4 3 27 27 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 30 30 H 1.07998 * 127.02124 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99754 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.47616 * 299.99624 * 8 7 5 33 33 H 1.08997 * 109.47365 * 60.00102 * 8 7 5 34 34 H 0.97000 * 120.00822 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46673 * 299.99943 * 12 11 9 36 36 H 1.08997 * 109.46999 * 59.99620 * 12 11 9 37 37 H 1.09000 * 109.47118 * 299.99597 * 13 12 11 38 38 H 1.08997 * 109.47269 * 60.00126 * 13 12 11 39 39 H 1.09001 * 109.46823 * 300.00286 * 14 13 12 40 40 H 1.08997 * 109.46995 * 60.00053 * 14 13 12 41 41 H 0.97005 * 119.99889 * 0.02562 * 15 14 13 42 42 H 0.97001 * 119.99952 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.47047 * 89.99711 * 25 24 4 44 44 H 1.08998 * 109.47517 * 210.00330 * 25 24 4 45 45 H 1.09004 * 109.47117 * 330.00266 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0014 6 8 5.9891 0.8666 0.0023 7 7 4.8243 2.7581 0.0011 8 6 6.0484 3.5628 0.0024 9 6 5.6875 5.0260 0.0023 10 8 4.5226 5.3633 0.0008 11 7 6.6594 5.9598 0.0029 12 6 6.3087 7.3822 0.0023 13 6 7.5872 8.2227 0.0038 14 6 7.2208 9.7083 0.0025 15 7 8.4449 10.5131 0.0033 16 6 8.3655 11.8802 0.0029 17 1 7.4004 12.3650 0.0015 18 6 9.5253 12.6427 0.0031 19 7 10.7014 12.0519 0.0043 20 14 9.4170 14.5076 0.0033 21 1 9.3880 15.0016 1.4034 22 1 10.5988 15.0722 -0.6964 23 1 8.1780 14.9315 -0.6969 24 6 3.5790 -0.7582 0.0015 25 6 4.7390 -1.7202 0.0030 26 8 2.2852 -1.0935 0.0069 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9595 2.1230 -0.0004 31 1 3.9576 3.1935 -0.0001 32 1 6.6333 3.3334 0.8931 33 1 6.6354 3.3330 -0.8868 34 1 7.5912 5.6901 0.0037 35 1 5.7236 7.6117 -0.8883 36 1 5.7220 7.6121 0.8916 37 1 8.1719 7.9931 0.8946 38 1 8.1741 7.9929 -0.8854 39 1 6.6362 9.9375 -0.8885 40 1 6.6336 9.9384 0.8914 41 1 9.3117 10.0776 0.0041 42 1 11.5119 12.5848 0.0048 43 1 5.0180 -1.9514 1.0310 44 1 4.4510 -2.6375 -0.5104 45 1 5.5872 -1.2674 -0.5106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176423022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:32 Heat of formation + Delta-G solvation = -61.400166 kcal Electronic energy + Delta-G solvation = -25388.269153 eV Core-core repulsion = 21407.379048 eV Total energy + Delta-G solvation = -3980.890105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01266 -40.33777 -39.23332 -36.22412 -34.82561 -34.43130 -33.55601 -33.29898 -32.10022 -30.22189 -29.76183 -28.16479 -25.64988 -24.96584 -23.38356 -22.57235 -21.39900 -21.26894 -20.64802 -19.98704 -17.97555 -17.16384 -16.92636 -16.74988 -16.63144 -16.25617 -15.83893 -15.51659 -15.30577 -14.74558 -14.45832 -14.40966 -13.97004 -13.78797 -13.68809 -13.37085 -13.29837 -13.26077 -13.10098 -13.02776 -13.01256 -12.82182 -12.36672 -11.98734 -11.71999 -11.02091 -10.95817 -10.83371 -10.66874 -10.37191 -10.23016 -10.17978 -10.04212 -9.73301 -9.52184 -9.21954 -8.90547 -8.79266 -6.96334 -5.79584 -3.08794 0.96593 1.59110 2.25603 2.31723 2.57243 3.01044 3.21626 3.42512 3.47658 3.49374 4.01207 4.33064 4.37589 4.49841 4.56716 4.77288 4.83524 4.96254 4.97917 5.01861 5.03977 5.06110 5.12023 5.21029 5.23895 5.34601 5.51635 5.54831 5.55277 5.75397 5.85981 5.91817 5.98457 5.99174 6.13719 6.27428 6.28557 6.63976 6.73997 6.78277 7.16794 7.24528 7.67786 7.86277 7.91180 8.39242 9.50486 10.07155 10.41704 11.43315 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034782 B = 0.001505 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.813648 B =18597.792150 C =19360.949318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.012 4.012 3 C -0.185 4.185 4 C -0.244 4.244 5 C 0.595 3.405 6 O -0.543 6.543 7 N -0.711 5.711 8 C 0.101 3.899 9 C 0.507 3.493 10 O -0.541 6.541 11 N -0.720 5.720 12 C 0.122 3.878 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.081 3.919 25 C -0.083 4.083 26 O -0.174 6.174 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.413 0.587 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.205 -29.888 -0.043 34.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.204 4.204 4 C -0.249 4.249 5 C 0.384 3.616 6 O -0.423 6.423 7 N -0.366 5.366 8 C -0.027 4.027 9 C 0.292 3.708 10 O -0.419 6.419 11 N -0.371 5.371 12 C -0.001 4.001 13 C -0.177 4.177 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.027 3.973 25 C -0.139 4.139 26 O -0.071 6.071 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.176 0.824 31 H 0.251 0.749 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.458 -30.088 -0.050 34.786 hybrid contribution 0.400 1.356 0.024 1.414 sum -17.057 -28.733 -0.025 33.415 Atomic orbital electron populations 1.20362 0.84552 1.04353 1.03828 1.22262 0.94058 0.83577 1.06155 1.22640 0.90664 0.99726 1.07383 1.20990 0.93636 0.93240 1.17002 1.17122 0.87560 0.81279 0.75676 1.90763 1.28686 1.71866 1.50955 1.45455 1.10006 1.05570 1.75544 1.21078 0.88526 0.87908 1.05170 1.20449 0.86033 0.87870 0.76444 1.90700 1.18895 1.82276 1.50014 1.45981 1.09665 1.07021 1.74439 1.21421 0.98092 0.77946 1.02664 1.21957 0.96208 0.96612 1.02888 1.20516 0.90851 0.87595 0.98224 1.42330 1.02698 1.03125 1.89636 1.19248 0.92714 0.82524 1.42822 0.91081 1.24752 0.95226 0.98092 1.02899 1.69658 0.96588 1.34271 1.57724 0.86164 0.76875 0.85458 0.77547 1.21671 1.21727 1.20718 1.22793 0.82979 0.93941 0.97540 1.20636 0.92056 0.96673 1.04511 1.83711 1.16133 1.35685 1.71596 0.89844 0.88995 0.90381 0.82392 0.74910 0.88054 0.88046 0.76043 0.91117 0.91124 0.91158 0.91161 0.96054 0.96051 0.78282 0.93482 0.89230 0.90342 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.40 36.01 0.37 0.08 16 2 C -0.01 -0.09 7.28 -35.74 -0.26 -0.35 16 3 C -0.18 -1.55 10.48 -37.46 -0.39 -1.94 16 4 C -0.24 -2.47 6.31 -103.28 -0.65 -3.13 16 5 C 0.59 6.64 7.81 -12.54 -0.10 6.54 16 6 O -0.54 -7.05 14.84 5.27 0.08 -6.98 16 7 N -0.71 -7.11 5.52 -62.58 -0.35 -7.45 16 8 C 0.10 0.90 6.15 -5.19 -0.03 0.87 16 9 C 0.51 5.57 7.90 -10.98 -0.09 5.48 16 10 O -0.54 -7.70 15.67 5.56 0.09 -7.62 16 11 N -0.72 -7.31 5.56 -60.29 -0.33 -7.64 16 12 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 13 C -0.14 -2.00 5.44 -26.73 -0.15 -2.15 16 14 C 0.16 3.03 6.26 -4.04 -0.03 3.01 16 15 N -0.73 -18.42 5.60 -59.91 -0.34 -18.76 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 20 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.08 0.75 7.37 -34.96 -0.26 0.49 16 25 C -0.08 -0.57 9.89 36.01 0.36 -0.21 16 26 O -0.17 -1.57 10.52 7.66 0.08 -1.49 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.16 1.05 7.74 -52.49 -0.41 0.64 16 31 H 0.41 4.03 6.61 -40.82 -0.27 3.76 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.40 3.10 8.47 -40.82 -0.35 2.76 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.38 10.02 7.67 -40.82 -0.31 9.71 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.11 0.88 6.49 -51.93 -0.34 0.55 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -35.27 387.08 -7.44 -42.71 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.71 Total: 8.71 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.49 Total: 2.75 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.29 Total: -61.24 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.25 Total: -16.08 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.27 -7.44 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176423022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.695 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds