Wall clock time and date at job start Tue Mar 31 2020 14:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00031 * 2 1 4 4 H 1.48496 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47407 * 300.00316 * 3 2 1 6 6 H 1.48504 * 109.47149 * 60.00083 * 3 2 1 7 7 C 1.38814 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00343 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99419 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99611 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46964 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.46844 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00002 * 180.02562 * 13 12 11 15 15 O 1.21284 * 119.99651 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00019 * 180.02562 * 14 13 12 17 17 H 1.08994 * 110.72892 * 56.90205 * 16 14 13 18 18 C 1.54943 * 110.66513 * 293.80257 * 16 14 13 19 19 C 1.54601 * 102.91832 * 204.15344 * 18 16 14 20 20 C 1.53993 * 105.14133 * 21.95763 * 19 18 16 21 21 N 1.47904 * 107.06011 * 1.22433 * 20 19 18 22 22 C 1.46897 * 110.99978 * 214.15648 * 21 20 19 23 23 C 1.52999 * 109.47203 * 294.84568 * 22 21 20 24 24 F 1.39909 * 109.46891 * 65.87848 * 23 22 21 25 25 F 1.39900 * 109.47214 * 185.87832 * 23 22 21 26 26 F 1.39898 * 109.47308 * 305.88243 * 23 22 21 27 27 H 0.97002 * 120.00036 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00481 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47405 * 59.99588 * 10 9 7 30 30 H 1.09006 * 109.47038 * 299.99307 * 10 9 7 31 31 H 1.08996 * 109.47377 * 59.99497 * 11 10 9 32 32 H 1.09004 * 109.46914 * 299.99172 * 11 10 9 33 33 H 1.08996 * 109.47319 * 59.99663 * 12 11 10 34 34 H 1.08999 * 109.47472 * 299.99593 * 12 11 10 35 35 H 0.96995 * 120.00016 * 359.97438 * 13 12 11 36 36 H 1.08998 * 110.71887 * 85.79314 * 18 16 14 37 37 H 1.08997 * 110.87494 * 322.57903 * 18 16 14 38 38 H 1.08996 * 110.30360 * 263.03842 * 19 18 16 39 39 H 1.09002 * 110.30664 * 140.87435 * 19 18 16 40 40 H 1.09000 * 109.91620 * 241.86930 * 20 19 18 41 41 H 1.09004 * 109.91519 * 120.57909 * 20 19 18 42 42 H 1.09002 * 109.46860 * 174.84532 * 22 21 20 43 43 H 1.08999 * 109.46904 * 54.84846 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0035 12 6 1.8288 -6.1447 -0.0042 13 7 0.8768 -7.2582 -0.0054 14 6 1.3260 -8.5289 -0.0056 15 8 2.5185 -8.7505 -0.0053 16 6 0.3467 -9.6743 -0.0075 17 1 -0.3260 -9.6053 -0.8622 18 6 -0.4549 -9.7105 1.3180 19 6 -0.8919 -11.1901 1.4173 20 6 0.1029 -11.9636 0.5321 21 7 1.0624 -10.9759 -0.0075 22 6 1.4881 -11.3426 -1.3648 23 6 2.2749 -12.6539 -1.3157 24 9 1.4257 -13.6928 -0.9195 25 9 2.7940 -12.9340 -2.5843 26 9 3.3244 -12.5339 -0.3985 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.6840 -3.7149 0.8888 30 1 2.6853 -3.7141 -0.8912 31 1 0.4381 -4.7613 -0.8941 32 1 0.4362 -4.7626 0.8859 33 1 2.4548 -6.2033 0.8862 34 1 2.4562 -6.2016 -0.8937 35 1 -0.0768 -7.0810 -0.0053 36 1 -1.3236 -9.0546 1.2612 37 1 0.1781 -9.4378 2.1623 38 1 -1.9073 -11.3108 1.0399 39 1 -0.8275 -11.5351 2.4493 40 1 -0.4285 -12.4503 -0.2857 41 1 0.6313 -12.7068 1.1294 42 1 2.1207 -10.5543 -1.7726 43 1 0.6106 -11.4689 -1.9990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176991799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:48 Heat of formation + Delta-G solvation = -201.624079 kcal Electronic energy + Delta-G solvation = -27392.166486 eV Core-core repulsion = 22863.339076 eV Total energy + Delta-G solvation = -4528.827410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.10364 -48.66202 -48.54329 -41.28319 -39.20918 -37.43358 -35.88201 -34.12432 -33.61683 -31.63216 -30.20149 -28.98424 -26.95771 -24.84189 -24.20862 -23.16937 -22.56243 -21.93974 -21.03163 -19.59271 -19.52190 -19.16706 -18.45662 -18.10238 -17.31592 -16.88941 -16.65754 -16.48047 -15.85383 -15.61279 -15.50977 -15.39654 -15.31520 -15.07320 -15.00080 -14.83680 -14.74636 -14.71204 -14.47519 -14.25783 -13.86156 -13.48497 -13.29601 -12.98352 -12.83673 -12.64469 -12.58590 -12.41475 -12.33802 -12.19816 -12.03429 -12.02273 -11.78920 -11.56714 -10.95564 -10.81274 -10.07801 -9.66508 -9.01626 -7.96991 -5.25792 1.48277 1.48458 1.58903 1.62808 1.65716 1.98830 2.54220 2.59929 2.81119 3.03355 3.36852 3.37123 3.52118 3.60578 3.78694 3.92516 4.01149 4.08228 4.11564 4.17366 4.28006 4.30945 4.44979 4.50191 4.69948 4.74917 4.75756 4.85998 4.90191 4.99414 5.09209 5.23184 5.30193 5.33296 5.44505 5.49392 5.53050 5.67880 6.26348 6.60229 7.29118 7.32834 8.07552 8.31462 9.26648 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.026821 B = 0.001960 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.720063 B =14284.172362 C =14970.021927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.135 3.865 13 N -0.714 5.714 14 C 0.515 3.485 15 O -0.568 6.568 16 C 0.054 3.946 17 H 0.117 0.883 18 C -0.109 4.109 19 C -0.121 4.121 20 C 0.025 3.975 21 N -0.516 5.516 22 C 0.006 3.994 23 C 0.459 3.541 24 F -0.183 7.183 25 F -0.187 7.187 26 F -0.186 7.186 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.416 0.584 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 -29.861 -1.272 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.155 4.155 12 C 0.011 3.989 13 N -0.368 5.368 14 C 0.301 3.699 15 O -0.446 6.446 16 C -0.057 4.057 17 H 0.135 0.865 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.102 4.102 21 N -0.242 5.242 22 C -0.123 4.123 23 C 0.404 3.596 24 F -0.164 7.164 25 F -0.168 7.168 26 F -0.168 7.168 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.253 0.747 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.021 -29.945 -0.957 30.229 hybrid contribution -0.453 0.904 -0.511 1.133 sum -4.474 -29.041 -1.468 29.420 Atomic orbital electron populations 1.69804 1.06492 1.26117 1.59425 1.25571 0.96491 1.01098 1.03593 0.85073 0.78172 0.79734 0.76780 1.19248 1.21859 1.21866 1.19669 0.91523 0.85444 1.41314 0.90826 1.42545 1.05762 1.01147 1.89508 1.20688 0.94179 0.84877 0.97857 1.21688 0.98390 0.92036 1.03375 1.21039 0.91720 0.84487 1.01681 1.45863 1.11219 1.04787 1.74893 1.20805 0.89409 0.84205 0.75439 1.90726 1.18628 1.85101 1.50145 1.22804 0.93046 0.87112 1.02706 0.86513 1.22512 0.99719 0.98635 0.93897 1.22406 0.99305 0.93202 1.01026 1.23229 0.92987 0.94579 0.99357 1.64244 1.38527 1.02634 1.18750 1.23417 1.01782 0.93509 0.93627 1.20543 0.78709 0.87322 0.73023 1.93170 1.70319 1.62168 1.90790 1.93183 1.87917 1.94744 1.41001 1.93199 1.59923 1.96161 1.67514 0.93880 0.79156 0.96207 0.96133 0.90557 0.90619 0.92396 0.92143 0.74708 0.86915 0.91682 0.88412 0.90045 0.91095 0.90503 0.87049 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -37.33 5.60 -343.45 -1.92 -39.25 16 10 C 0.15 5.81 6.26 86.38 0.54 6.35 16 11 C -0.12 -3.22 5.44 30.59 0.17 -3.05 16 12 C 0.14 3.33 5.67 86.38 0.49 3.82 16 13 N -0.71 -13.29 5.55 -463.05 -2.57 -15.86 16 14 C 0.52 11.01 6.97 87.66 0.61 11.62 16 15 O -0.57 -17.85 15.84 -3.04 -0.05 -17.90 16 16 C 0.05 0.71 2.71 44.52 0.12 0.84 16 17 H 0.12 0.84 8.02 -2.39 -0.02 0.82 16 18 C -0.11 -1.05 6.48 31.80 0.21 -0.84 16 19 C -0.12 -0.90 6.93 31.47 0.22 -0.68 16 20 C 0.03 0.29 5.09 86.45 0.44 0.73 16 21 N -0.52 -8.45 4.41 -862.56 -3.80 -12.25 16 22 C 0.01 0.10 4.69 86.30 0.41 0.50 16 23 C 0.46 8.31 3.18 71.98 0.23 8.54 16 24 F -0.18 -3.02 14.73 44.97 0.66 -2.36 16 25 F -0.19 -3.52 17.32 44.97 0.78 -2.74 16 26 F -0.19 -4.51 17.13 44.97 0.77 -3.74 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.38 19.58 7.67 -92.71 -0.71 18.87 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.42 5.07 8.47 -92.71 -0.79 4.28 16 36 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.91 8.05 -2.39 -0.02 0.89 16 38 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.60 7.01 -2.39 -0.02 0.58 16 41 H 0.08 1.07 7.77 -2.38 -0.02 1.05 16 42 H 0.11 2.00 7.42 -2.39 -0.02 1.98 16 43 H 0.11 0.92 7.95 -2.39 -0.02 0.90 16 Total: -1.00 -73.62 365.23 0.46 -73.16 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.45 Total: 20.13 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 4.73 Total: 10.98 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -8.01 Total: -125.42 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.05 Total: -17.90 kcal Atomic # 9 Polarization: -11.06 SS G_CDS: 2.21 Total: -8.85 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.62 0.46 -73.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176991799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.462 kcal (2) G-P(sol) polarization free energy of solvation -73.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds