Wall clock time and date at job start Tue Mar 31 2020 14:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48505 * 109.46997 * 239.99674 * 3 2 1 5 5 H 1.48501 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47074 * 119.99680 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 H 1.09007 * 109.90605 * 300.69526 * 16 14 13 18 18 C 1.53993 * 109.92291 * 61.80186 * 16 14 13 19 19 C 1.54591 * 105.14274 * 120.57487 * 18 16 14 20 20 C 1.54938 * 102.91945 * 21.95961 * 19 18 16 21 21 N 1.47907 * 109.91504 * 179.59804 * 16 14 13 22 22 C 1.46891 * 111.00147 * 94.80033 * 21 16 14 23 23 C 1.53006 * 109.47057 * 170.00157 * 22 21 16 24 24 F 1.39893 * 109.47311 * 59.99792 * 23 22 21 25 25 F 1.39900 * 109.46972 * 180.02562 * 23 22 21 26 26 F 1.39900 * 109.47102 * 299.99567 * 23 22 21 27 27 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 30 30 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 31 31 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 32 32 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 33 33 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 34 34 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 36 36 H 1.08999 * 110.30699 * 239.49727 * 18 16 14 37 37 H 1.08996 * 110.30462 * 1.55627 * 18 16 14 38 38 H 1.08995 * 110.72472 * 140.31726 * 19 18 16 39 39 H 1.08998 * 110.72280 * 263.42731 * 19 18 16 40 40 H 1.09001 * 110.67030 * 81.02192 * 20 19 18 41 41 H 1.09004 * 110.66609 * 203.98353 * 20 19 18 42 42 H 1.09007 * 109.47489 * 289.99684 * 22 21 16 43 43 H 1.08999 * 109.47272 * 49.99962 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5186 -8.7505 0.0072 16 6 0.3468 -9.6743 0.0130 17 1 -0.2916 -9.6120 0.8943 18 6 -0.5147 -9.6350 -1.2628 19 6 -0.2511 -10.9842 -1.9699 20 6 0.2546 -11.8868 -0.8165 21 7 1.0764 -10.9610 0.0094 22 6 1.2441 -11.4749 1.3752 23 6 1.7734 -12.9093 1.3189 24 9 3.0072 -12.9257 0.6597 25 9 1.9326 -13.3990 2.6198 26 9 0.8637 -13.7152 0.6260 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.6847 -3.7145 0.8905 30 1 2.6848 -3.7145 -0.8895 31 1 0.4375 -4.7619 -0.8903 32 1 0.4368 -4.7621 0.8897 33 1 2.4549 -6.2024 0.8910 34 1 2.4561 -6.2025 -0.8890 35 1 -0.0768 -7.0810 0.0005 36 1 -1.5696 -9.5431 -1.0042 37 1 -0.2086 -8.8058 -1.9005 38 1 -1.1717 -11.3827 -2.3961 39 1 0.5125 -10.8735 -2.7397 40 1 -0.5826 -12.2751 -0.2365 41 1 0.8631 -12.7033 -1.2054 42 1 1.9529 -10.8470 1.9152 43 1 0.2828 -11.4621 1.8888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176991802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:51 Heat of formation + Delta-G solvation = -170.701087 kcal Electronic energy + Delta-G solvation = -27381.671318 eV Core-core repulsion = 22854.184830 eV Total energy + Delta-G solvation = -4527.486488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.47978 -48.05945 -47.84362 -40.52668 -38.37723 -35.98641 -34.40228 -33.45565 -32.03993 -30.38296 -29.09532 -28.39490 -25.36964 -23.83315 -23.00389 -22.07415 -21.76658 -21.21194 -20.09852 -18.94786 -18.82569 -17.97662 -17.31481 -16.88453 -16.40171 -16.12392 -15.51706 -15.21993 -15.01370 -14.83708 -14.60704 -14.51098 -14.34899 -14.21102 -14.08192 -14.02669 -13.75153 -13.51953 -13.28331 -13.11082 -12.97327 -12.56408 -12.21387 -12.10946 -11.74157 -11.64352 -11.52315 -11.23699 -10.97292 -10.92308 -10.79976 -10.62949 -10.13796 -9.90650 -9.71423 -9.08325 -9.04221 -8.89185 -6.95564 -5.78925 -3.07894 2.26406 2.53707 2.72855 3.28681 3.39749 3.43684 3.47758 3.49020 3.64769 3.94773 4.09418 4.18823 4.38073 4.57335 4.57631 4.66570 4.69255 4.86602 5.01008 5.08571 5.15690 5.28117 5.30048 5.40032 5.55763 5.55962 5.60385 5.67072 5.94603 6.03418 6.04436 6.17026 6.17914 6.29757 6.43620 6.76729 6.80920 7.44207 7.68237 8.17964 8.40116 9.51180 10.08062 10.42742 11.44017 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.001910 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.431976 B =14659.938414 C =15162.477209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.124 3.876 13 N -0.729 5.729 14 C 0.516 3.484 15 O -0.516 6.516 16 C 0.050 3.950 17 H 0.085 0.915 18 C -0.124 4.124 19 C -0.122 4.122 20 C 0.023 3.977 21 N -0.487 5.487 22 C 0.003 3.997 23 C 0.458 3.542 24 F -0.169 7.169 25 F -0.182 7.182 26 F -0.184 7.184 27 H 0.256 0.744 28 H 0.383 0.617 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -29.507 0.622 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.175 4.175 12 C 0.001 3.999 13 N -0.382 5.382 14 C 0.300 3.700 15 O -0.390 6.390 16 C -0.061 4.061 17 H 0.102 0.898 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.104 4.104 21 N -0.212 5.212 22 C -0.127 4.127 23 C 0.404 3.596 24 F -0.150 7.150 25 F -0.164 7.164 26 F -0.166 7.166 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.144 0.856 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.766 -29.513 0.418 29.645 hybrid contribution -1.032 0.755 0.486 1.368 sum -3.798 -28.758 0.904 29.022 Atomic orbital electron populations 1.69644 1.05138 1.25817 1.57776 1.24755 0.95566 0.97772 1.02968 0.86237 0.78506 0.83354 0.77915 1.21210 1.21670 1.21213 1.19204 0.91083 0.84122 1.42770 0.91138 1.42330 1.05846 0.99991 1.89645 1.20522 0.93275 0.85183 0.98226 1.21941 0.99564 0.93348 1.02667 1.21350 0.91672 0.84439 1.02477 1.46059 1.10684 1.05621 1.75834 1.20227 0.89543 0.83375 0.76888 1.90730 1.16298 1.84367 1.47581 1.22393 0.93516 0.89614 1.00614 0.89752 1.22438 0.99283 0.99735 0.94738 1.22505 1.01861 0.93928 0.97715 1.23781 0.96183 0.95854 0.94613 1.64456 1.46136 1.02014 1.08573 1.23503 1.03966 0.91256 0.93980 1.20334 0.76467 0.89364 0.73472 1.93243 1.43866 1.96929 1.80950 1.93200 1.95640 1.89656 1.37883 1.93172 1.67148 1.76774 1.79486 0.93450 0.78317 0.96059 0.96044 0.91296 0.91351 0.91413 0.91322 0.76695 0.89884 0.89738 0.90126 0.90110 0.92378 0.88606 0.85650 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.13 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.49 5.60 -59.90 -0.34 -18.82 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 11 C -0.14 -2.00 5.44 -26.73 -0.15 -2.15 16 12 C 0.12 1.61 5.67 -4.04 -0.02 1.58 16 13 N -0.73 -7.58 5.43 -60.29 -0.33 -7.91 16 14 C 0.52 5.94 6.99 -10.99 -0.08 5.87 16 15 O -0.52 -8.24 16.46 5.55 0.09 -8.15 16 16 C 0.05 0.40 2.87 -67.79 -0.19 0.20 16 17 H 0.08 0.48 7.57 -51.93 -0.39 0.09 16 18 C -0.12 -0.75 6.48 -25.38 -0.16 -0.92 16 19 C -0.12 -0.74 7.06 -24.87 -0.18 -0.92 16 20 C 0.02 0.16 4.71 -1.74 -0.01 0.15 16 21 N -0.49 -4.34 4.46 -223.70 -1.00 -5.34 16 22 C 0.00 0.02 5.16 -3.83 -0.02 0.00 16 23 C 0.46 3.89 3.07 37.16 0.11 4.01 16 24 F -0.17 -1.83 17.24 2.25 0.04 -1.79 16 25 F -0.18 -1.59 17.32 2.25 0.04 -1.55 16 26 F -0.18 -1.49 13.58 2.25 0.03 -1.46 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.38 10.01 7.67 -40.82 -0.31 9.69 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.10 8.45 -40.82 -0.34 2.75 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.59 7.63 -51.93 -0.40 0.19 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.33 7.36 -51.93 -0.38 -0.05 16 41 H 0.10 0.73 7.00 -51.93 -0.36 0.37 16 42 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.41 7.81 -51.93 -0.41 0.01 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -33.92 364.27 -7.61 -41.53 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.37 Total: 4.62 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -0.97 Total: 3.42 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.94 Total: -59.48 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.80 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.92 -7.61 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176991802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.176 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds