Wall clock time and date at job start Tue Mar 31 2020 14:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48505 * 109.46997 * 239.99674 * 3 2 1 5 5 H 1.48501 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47074 * 119.99680 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 H 1.09007 * 109.90605 * 300.69526 * 16 14 13 18 18 C 1.53993 * 109.92291 * 61.80186 * 16 14 13 19 19 C 1.54591 * 105.14274 * 120.57487 * 18 16 14 20 20 C 1.54938 * 102.91945 * 21.95961 * 19 18 16 21 21 N 1.47907 * 109.91504 * 179.59804 * 16 14 13 22 22 C 1.46891 * 111.00147 * 94.80033 * 21 16 14 23 23 C 1.53006 * 109.47057 * 170.00157 * 22 21 16 24 24 F 1.39893 * 109.47311 * 59.99792 * 23 22 21 25 25 F 1.39900 * 109.46972 * 180.02562 * 23 22 21 26 26 F 1.39900 * 109.47102 * 299.99567 * 23 22 21 27 27 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 30 30 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 31 31 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 32 32 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 33 33 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 34 34 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 36 36 H 1.08999 * 110.30699 * 239.49727 * 18 16 14 37 37 H 1.08996 * 110.30462 * 1.55627 * 18 16 14 38 38 H 1.08995 * 110.72472 * 140.31726 * 19 18 16 39 39 H 1.08998 * 110.72280 * 263.42731 * 19 18 16 40 40 H 1.09001 * 110.67030 * 81.02192 * 20 19 18 41 41 H 1.09004 * 110.66609 * 203.98353 * 20 19 18 42 42 H 1.09007 * 109.47489 * 289.99684 * 22 21 16 43 43 H 1.08999 * 109.47272 * 49.99962 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5186 -8.7505 0.0072 16 6 0.3468 -9.6743 0.0130 17 1 -0.2916 -9.6120 0.8943 18 6 -0.5147 -9.6350 -1.2628 19 6 -0.2511 -10.9842 -1.9699 20 6 0.2546 -11.8868 -0.8165 21 7 1.0764 -10.9610 0.0094 22 6 1.2441 -11.4749 1.3752 23 6 1.7734 -12.9093 1.3189 24 9 3.0072 -12.9257 0.6597 25 9 1.9326 -13.3990 2.6198 26 9 0.8637 -13.7152 0.6260 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.6847 -3.7145 0.8905 30 1 2.6848 -3.7145 -0.8895 31 1 0.4375 -4.7619 -0.8903 32 1 0.4368 -4.7621 0.8897 33 1 2.4549 -6.2024 0.8910 34 1 2.4561 -6.2025 -0.8890 35 1 -0.0768 -7.0810 0.0005 36 1 -1.5696 -9.5431 -1.0042 37 1 -0.2086 -8.8058 -1.9005 38 1 -1.1717 -11.3827 -2.3961 39 1 0.5125 -10.8735 -2.7397 40 1 -0.5826 -12.2751 -0.2365 41 1 0.8631 -12.7033 -1.2054 42 1 1.9529 -10.8470 1.9152 43 1 0.2828 -11.4621 1.8888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176991802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:51 Heat of formation + Delta-G solvation = -195.690594 kcal Electronic energy + Delta-G solvation = -27382.754945 eV Core-core repulsion = 22854.184830 eV Total energy + Delta-G solvation = -4528.570115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.16308 -48.71507 -48.58543 -41.28585 -39.15405 -37.42317 -35.86866 -34.14201 -33.61290 -31.63737 -30.19048 -28.98259 -26.93347 -24.82358 -24.20994 -23.02689 -22.57019 -22.27608 -20.96599 -19.65563 -19.51611 -19.16762 -18.58885 -17.87815 -17.24429 -16.96707 -16.59720 -16.51858 -15.86067 -15.67929 -15.55498 -15.38102 -15.27620 -15.10986 -15.03537 -14.93469 -14.81364 -14.71992 -14.37386 -14.15655 -13.86309 -13.55273 -13.28617 -12.83834 -12.76869 -12.72246 -12.59501 -12.41944 -12.30564 -12.09642 -12.04042 -11.99153 -11.80228 -11.70234 -10.93537 -10.79905 -10.05694 -9.63442 -9.01700 -7.96457 -5.25481 1.48048 1.50920 1.57052 1.62029 1.68185 1.98584 2.54676 2.60831 2.76510 3.01845 3.33972 3.37211 3.53670 3.59954 3.78843 3.88515 4.04117 4.05894 4.10881 4.22290 4.29904 4.30869 4.46971 4.53519 4.66892 4.74829 4.75492 4.83287 4.90072 4.97421 5.09799 5.19300 5.30017 5.33043 5.45575 5.48846 5.52941 5.66473 6.26399 6.62648 7.32328 7.32979 8.07707 8.31780 9.26733 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.001910 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.431976 B =14659.938414 C =15162.477209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.136 3.864 13 N -0.717 5.717 14 C 0.513 3.487 15 O -0.567 6.567 16 C 0.056 3.944 17 H 0.116 0.884 18 C -0.119 4.119 19 C -0.121 4.121 20 C 0.025 3.975 21 N -0.518 5.518 22 C 0.006 3.994 23 C 0.458 3.542 24 F -0.187 7.187 25 F -0.184 7.184 26 F -0.181 7.181 27 H 0.253 0.747 28 H 0.376 0.624 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.415 0.585 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 -30.142 0.847 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.155 4.155 12 C 0.011 3.989 13 N -0.371 5.371 14 C 0.299 3.701 15 O -0.445 6.445 16 C -0.055 4.055 17 H 0.134 0.866 18 C -0.157 4.157 19 C -0.159 4.159 20 C -0.102 4.102 21 N -0.243 5.243 22 C -0.123 4.123 23 C 0.404 3.596 24 F -0.169 7.169 25 F -0.166 7.166 26 F -0.162 7.162 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.084 -30.178 0.641 30.460 hybrid contribution -0.575 0.872 0.408 1.121 sum -4.659 -29.306 1.048 29.692 Atomic orbital electron populations 1.69788 1.06497 1.26281 1.59235 1.25578 0.96492 1.01118 1.03501 0.85204 0.77244 0.79071 0.78197 1.20434 1.21909 1.20410 1.19602 0.91524 0.85472 1.41669 0.90847 1.42530 1.05744 1.01127 1.89559 1.20686 0.94173 0.84884 0.97839 1.21687 0.98386 0.92058 1.03338 1.21027 0.91734 0.84527 1.01605 1.45887 1.11150 1.04847 1.75178 1.20980 0.89564 0.84195 0.75340 1.90711 1.18717 1.85093 1.49969 1.22427 0.92641 0.87558 1.02919 0.86635 1.22488 1.00565 0.99163 0.93533 1.22513 1.02289 0.94022 0.97038 1.23778 0.96230 0.95361 0.94813 1.64326 1.47588 1.02869 1.09504 1.23503 1.05140 0.89932 0.93750 1.20517 0.75855 0.90097 0.73143 1.93204 1.45240 1.97050 1.81378 1.93193 1.95638 1.89779 1.37986 1.93175 1.66819 1.76808 1.79422 0.93860 0.79164 0.96148 0.96225 0.90642 0.90598 0.92256 0.92437 0.74785 0.86752 0.90776 0.87875 0.91962 0.90534 0.89903 0.86717 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.75 -37.52 5.60 -343.44 -1.92 -39.44 16 10 C 0.15 5.86 6.26 86.38 0.54 6.40 16 11 C -0.12 -3.26 5.44 30.59 0.17 -3.09 16 12 C 0.14 3.40 5.67 86.38 0.49 3.89 16 13 N -0.72 -13.71 5.43 -463.05 -2.51 -16.22 16 14 C 0.51 11.22 6.99 87.66 0.61 11.83 16 15 O -0.57 -18.26 16.46 -3.04 -0.05 -18.31 16 16 C 0.06 0.75 2.87 44.31 0.13 0.87 16 17 H 0.12 0.84 7.57 -2.38 -0.02 0.83 16 18 C -0.12 -1.10 6.48 31.47 0.20 -0.90 16 19 C -0.12 -1.21 7.06 31.80 0.22 -0.99 16 20 C 0.02 0.30 4.71 86.60 0.41 0.70 16 21 N -0.52 -8.46 4.46 -861.64 -3.85 -12.31 16 22 C 0.01 0.08 5.16 86.31 0.45 0.53 16 23 C 0.46 7.43 3.07 71.98 0.22 7.65 16 24 F -0.19 -4.12 17.24 44.97 0.78 -3.35 16 25 F -0.18 -3.07 17.32 44.97 0.78 -2.30 16 26 F -0.18 -2.69 13.58 44.97 0.61 -2.08 16 27 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 28 H 0.38 19.67 7.67 -92.71 -0.71 18.96 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.42 5.31 8.45 -92.71 -0.78 4.53 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.07 0.87 7.63 -2.39 -0.02 0.85 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.63 7.36 -2.39 -0.02 0.62 16 41 H 0.08 1.20 7.00 -2.39 -0.02 1.18 16 42 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.11 0.78 7.81 -2.39 -0.02 0.76 16 Total: -1.00 -73.81 364.27 0.43 -73.38 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.45 Total: 20.98 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 4.75 Total: 9.88 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -8.00 Total: -126.11 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 2.16 Total: -7.72 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.81 0.43 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176991802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.311 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds