Wall clock time and date at job start Tue Mar 31 2020 14:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48500 * 109.46820 * 270.00080 * 3 2 1 5 5 H 1.48495 * 109.47003 * 29.99941 * 3 2 1 6 6 H 1.48498 * 109.47024 * 150.00520 * 3 2 1 7 7 C 1.38807 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99801 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00285 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47382 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46981 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46736 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46734 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46734 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46773 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99721 * 180.02562 * 16 15 14 18 18 O 1.21609 * 119.99844 * 359.97438 * 17 16 15 19 19 C 1.47288 * 119.99613 * 180.02562 * 17 16 15 20 20 C 1.36568 * 125.80309 * 180.02562 * 19 17 16 21 21 C 1.40067 * 106.92810 * 179.97438 * 20 19 17 22 22 C 1.36569 * 106.92481 * 359.97438 * 21 20 19 23 23 C 1.47286 * 125.80563 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99694 * 179.97438 * 23 22 21 25 25 O 1.21613 * 120.00055 * 0.02562 * 23 22 21 26 26 O 1.34550 * 125.81026 * 0.27557 * 19 17 16 27 27 H 0.97006 * 119.99658 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00009 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47238 * 59.99754 * 10 9 7 30 30 H 1.09003 * 109.47109 * 300.00418 * 10 9 7 31 31 H 1.08998 * 109.46833 * 59.99999 * 11 10 9 32 32 H 1.08997 * 109.47009 * 299.99952 * 11 10 9 33 33 H 1.08998 * 109.47140 * 60.00429 * 12 11 10 34 34 H 1.08997 * 109.47408 * 299.99950 * 12 11 10 35 35 H 1.08998 * 109.46954 * 60.00317 * 13 12 11 36 36 H 1.08997 * 109.47133 * 300.00120 * 13 12 11 37 37 H 1.08998 * 109.47466 * 60.00233 * 14 13 12 38 38 H 1.08997 * 109.47084 * 299.99753 * 14 13 12 39 39 H 1.08998 * 109.46954 * 59.99920 * 15 14 13 40 40 H 1.08997 * 109.47133 * 299.99723 * 15 14 13 41 41 H 0.96996 * 120.00161 * 359.97438 * 16 15 14 42 42 H 1.08009 * 126.53833 * 359.96949 * 20 19 17 43 43 H 1.08003 * 126.53613 * 180.02562 * 21 20 19 44 44 H 0.97001 * 120.00485 * 0.02562 * 24 23 22 45 45 H 0.97005 * 119.99790 * 179.72388 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8289 -6.1447 -0.0018 13 6 0.8345 -7.3076 -0.0018 14 6 1.5996 -8.6326 -0.0018 15 6 0.6053 -9.7956 -0.0012 16 7 1.3378 -11.0643 -0.0018 17 6 0.6639 -12.2315 -0.0019 18 8 -0.5522 -12.2314 -0.0010 19 6 1.4004 -13.5070 -0.0020 20 6 0.8407 -14.7527 -0.0026 21 6 1.8958 -15.6739 -0.0030 22 6 3.0546 -14.9511 -0.0032 23 6 4.4179 -15.5086 -0.0031 24 7 5.4834 -14.6833 -0.0038 25 8 4.5821 -16.7136 -0.0033 26 8 2.7390 -13.6432 0.0033 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.6847 -3.7145 0.8894 30 1 2.6847 -3.7145 -0.8905 31 1 0.4375 -4.7617 -0.8914 32 1 0.4368 -4.7621 0.8886 33 1 2.4554 -6.2029 0.8882 34 1 2.4555 -6.2020 -0.8918 35 1 0.2077 -7.2496 -0.8916 36 1 0.2082 -7.2501 0.8883 37 1 2.2262 -8.6904 0.8881 38 1 2.2262 -8.6904 -0.8918 39 1 -0.0217 -9.7380 -0.8909 40 1 -0.0210 -9.7376 0.8890 41 1 2.3078 -11.0643 -0.0029 42 1 -0.2144 -14.9836 -0.0026 43 1 1.8095 -16.7505 -0.0039 44 1 5.3525 -13.7222 -0.0041 45 1 6.3813 -15.0505 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178984537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:02 Heat of formation + Delta-G solvation = -100.563966 kcal Electronic energy + Delta-G solvation = -24889.907888 eV Core-core repulsion = 20907.319513 eV Total energy + Delta-G solvation = -3982.588374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.98948 -40.79617 -40.29685 -37.92846 -36.84028 -35.42812 -35.04310 -34.20528 -33.54905 -31.94873 -31.04329 -28.42277 -26.32407 -25.29385 -23.80311 -23.03246 -22.40764 -22.10790 -21.87278 -21.26639 -19.85784 -19.11875 -18.79347 -17.96506 -17.84496 -17.16640 -17.02466 -16.65744 -16.29020 -15.91508 -15.66765 -15.41893 -15.36574 -15.20486 -15.13630 -14.36616 -14.29376 -14.21896 -14.07797 -13.88914 -13.43211 -13.04063 -12.94823 -12.65557 -12.39026 -12.18457 -12.04201 -11.88507 -11.80556 -11.78062 -11.61830 -11.31980 -11.30215 -11.29747 -10.93017 -10.92385 -10.38418 -9.91925 -9.00979 -7.96190 -5.25671 -0.57765 0.72963 1.09470 1.47087 1.49445 1.58023 1.91574 1.91706 1.94114 2.38581 2.55946 3.37394 3.45900 3.66123 3.72169 3.84464 4.02501 4.03763 4.26252 4.30016 4.31988 4.34146 4.36898 4.61131 4.65156 4.70828 4.78828 4.85231 4.97767 4.98821 5.04662 5.08497 5.15529 5.21670 5.30548 5.35208 5.40841 5.48611 5.55832 5.58981 5.68472 6.16989 6.26617 6.30838 6.87777 7.01617 7.32069 8.09603 8.32090 9.27585 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.001366 C = 0.001302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.386368 B =20490.659263 C =21507.390180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.751 5.751 10 C 0.147 3.853 11 C -0.117 4.117 12 C -0.104 4.104 13 C -0.114 4.114 14 C -0.119 4.119 15 C 0.117 3.883 16 N -0.701 5.701 17 C 0.599 3.401 18 O -0.549 6.549 19 C -0.048 4.048 20 C -0.133 4.133 21 C -0.131 4.131 22 C -0.054 4.054 23 C 0.610 3.390 24 N -0.817 5.817 25 O -0.555 6.555 26 O -0.143 6.143 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.419 0.581 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.421 0.579 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -34.357 0.025 35.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.006 4.006 16 N -0.352 5.352 17 C 0.385 3.615 18 O -0.429 6.429 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.108 4.108 23 C 0.393 3.607 24 N -0.381 5.381 25 O -0.435 6.435 26 O -0.039 6.039 27 H 0.060 0.940 28 H 0.204 0.796 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.257 0.743 42 H 0.196 0.804 43 H 0.198 0.802 44 H 0.253 0.747 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.857 -34.722 0.034 35.833 hybrid contribution 0.293 1.336 -0.011 1.368 sum 9.150 -33.386 0.022 34.617 Atomic orbital electron populations 1.69829 1.06720 1.26158 1.59454 1.25631 0.96461 1.01305 1.03550 0.85092 0.77697 0.79150 0.77530 1.21249 1.22045 1.19300 1.19698 0.91601 0.85545 1.41442 0.90595 1.42673 1.05699 1.01567 1.89468 1.20890 0.94468 0.85085 0.97441 1.21645 0.98079 0.94415 1.01390 1.21420 0.97965 0.92065 1.02743 1.21451 0.98072 0.93036 1.02621 1.21708 0.97769 0.91949 1.04225 1.21534 0.95217 0.81277 1.02552 1.45856 1.11559 1.05004 1.72804 1.16754 0.85889 0.81915 0.76952 1.90895 1.13417 1.86562 1.51994 1.22302 0.80551 0.96343 1.11028 1.22229 1.02295 0.89977 1.00826 1.22238 0.89704 1.02511 1.00684 1.22414 0.96223 0.81024 1.11140 1.16618 0.82426 0.85537 0.76080 1.43574 1.08654 1.11417 1.74503 1.90932 1.85074 1.15108 1.52368 1.83987 1.23005 1.26382 1.70514 0.93953 0.79582 0.96302 0.96306 0.92742 0.92733 0.91244 0.91236 0.91768 0.91771 0.89839 0.89833 0.91467 0.91454 0.74314 0.80437 0.80153 0.74714 0.74412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -39.32 5.60 -343.46 -1.92 -41.25 16 10 C 0.15 5.87 6.26 86.38 0.54 6.41 16 11 C -0.12 -3.57 5.33 30.59 0.16 -3.41 16 12 C -0.10 -2.13 5.21 30.60 0.16 -1.97 16 13 C -0.11 -1.81 5.21 30.60 0.16 -1.65 16 14 C -0.12 -1.24 5.33 30.60 0.16 -1.08 16 15 C 0.12 1.51 5.67 86.38 0.49 2.00 16 16 N -0.70 -8.10 5.55 -466.51 -2.59 -10.69 16 17 C 0.60 10.12 7.81 86.62 0.68 10.80 16 18 O -0.55 -13.38 16.86 -4.06 -0.07 -13.45 16 19 C -0.05 -0.68 7.14 24.26 0.17 -0.50 16 20 C -0.13 -1.76 10.60 22.32 0.24 -1.52 16 21 C -0.13 -1.61 10.60 22.32 0.24 -1.37 16 22 C -0.05 -0.65 7.14 24.26 0.17 -0.48 16 23 C 0.61 7.40 8.08 86.62 0.70 8.10 16 24 N -0.82 -3.08 8.87 -175.99 -1.56 -4.64 16 25 O -0.55 -10.93 17.70 -4.07 -0.07 -11.00 16 26 O -0.14 -1.52 10.14 -7.37 -0.07 -1.60 16 27 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 28 H 0.37 20.68 7.67 -92.70 -0.71 19.97 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.42 2.50 8.23 -92.71 -0.76 1.74 16 42 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.42 -0.36 8.59 -92.71 -0.80 -1.16 16 45 H 0.42 0.38 8.93 -92.70 -0.83 -0.44 16 Total: -1.00 -77.50 391.90 -0.85 -78.35 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -2.05 Total: 18.17 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.18 Total: -2.23 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.79 Total: -116.54 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.22 Total: -26.05 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -77.50 -0.85 -78.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178984537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.213 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds