Wall clock time and date at job start Tue Mar 31 2020 14:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00022 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00176 * 3 2 1 6 6 H 1.48497 * 109.46659 * 150.00107 * 3 2 1 7 7 C 1.38811 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99820 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99619 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47351 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47291 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46990 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46708 * 180.02562 * 15 14 13 17 17 C 1.34784 * 119.99893 * 180.02562 * 16 15 14 18 18 O 1.21597 * 119.99617 * 359.97438 * 17 16 15 19 19 C 1.47492 * 119.99978 * 179.72599 * 17 16 15 20 20 C 1.37808 * 126.77333 * 359.68770 * 19 17 16 21 21 O 1.33499 * 108.33963 * 179.82868 * 20 19 17 22 22 C 1.34878 * 109.89003 * 0.44486 * 21 20 19 23 23 C 1.46775 * 125.65718 * 179.75902 * 22 21 20 24 24 N 1.34771 * 119.99606 * 359.96084 * 23 22 21 25 25 O 1.21681 * 120.00014 * 179.97438 * 23 22 21 26 26 C 1.36064 * 108.69217 * 359.72092 * 22 21 20 27 27 H 0.96999 * 120.00170 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00534 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.47372 * 59.99309 * 10 9 7 30 30 H 1.09007 * 109.47120 * 299.99839 * 10 9 7 31 31 H 1.09000 * 109.47369 * 59.99881 * 11 10 9 32 32 H 1.09002 * 109.46959 * 299.99563 * 11 10 9 33 33 H 1.08998 * 109.47285 * 60.00109 * 12 11 10 34 34 H 1.09002 * 109.46807 * 299.99711 * 12 11 10 35 35 H 1.09005 * 109.47338 * 59.99437 * 13 12 11 36 36 H 1.08999 * 109.47071 * 300.00393 * 13 12 11 37 37 H 1.09000 * 109.46641 * 59.99885 * 14 13 12 38 38 H 1.08994 * 109.47288 * 300.00186 * 14 13 12 39 39 H 1.08998 * 109.46692 * 60.00542 * 15 14 13 40 40 H 1.08994 * 109.47584 * 300.00406 * 15 14 13 41 41 H 0.97005 * 120.00261 * 0.02562 * 16 15 14 42 42 H 1.07997 * 125.82831 * 359.97438 * 20 19 17 43 43 H 0.97002 * 120.00580 * 359.97438 * 24 23 22 44 44 H 0.97008 * 120.00058 * 180.02562 * 24 23 22 45 45 H 1.07992 * 126.69012 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4707 -0.0022 11 6 5.6164 -2.1911 -0.0032 12 6 6.3815 -3.5161 -0.0038 13 6 7.8857 -3.2365 -0.0042 14 6 8.6508 -4.5615 -0.0041 15 6 10.1550 -4.2818 -0.0051 16 7 10.8875 -5.5505 -0.0056 17 6 12.2354 -5.5505 -0.0060 18 8 12.8433 -4.4974 -0.0065 19 6 12.9729 -6.8278 -0.0005 20 6 12.4294 -8.0941 0.0115 21 8 13.4282 -8.9799 0.0091 22 6 14.6131 -8.3354 0.0058 23 6 15.9345 -8.9742 0.0076 24 7 16.0332 -10.3183 0.0137 25 8 16.9409 -8.2903 0.0038 26 6 14.3803 -6.9948 -0.0002 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3620 -0.0014 29 1 3.8486 -3.0418 -0.8924 30 1 3.8493 -3.0429 0.8876 31 1 5.8805 -1.6199 0.8868 32 1 5.8790 -1.6192 -0.8932 33 1 6.1176 -4.0877 -0.8936 34 1 6.1188 -4.0876 0.8864 35 1 8.1494 -2.6650 0.8858 36 1 8.1488 -2.6647 -0.8941 37 1 8.3872 -5.1332 -0.8939 38 1 8.3877 -5.1329 0.8860 39 1 10.4188 -3.7099 0.8845 40 1 10.4178 -3.7106 -0.8954 41 1 10.4026 -6.3906 -0.0057 42 1 11.3755 -8.3297 0.0189 43 1 15.2309 -10.8635 0.0173 44 1 16.9065 -10.7405 0.0152 45 1 15.1231 -6.2110 -0.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179129294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:06 Heat of formation + Delta-G solvation = -70.686156 kcal Electronic energy + Delta-G solvation = -24743.671195 eV Core-core repulsion = 20762.378420 eV Total energy + Delta-G solvation = -3981.292775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.51511 -39.99414 -39.74420 -36.98403 -35.61302 -34.59155 -34.15936 -33.71815 -32.04906 -30.93815 -30.15359 -27.38920 -24.83838 -24.44504 -23.37206 -22.09089 -21.63409 -21.21017 -20.87683 -20.30509 -19.35344 -17.78086 -17.48109 -17.22348 -17.09430 -16.58290 -16.35074 -16.25306 -15.39021 -15.04329 -14.97336 -14.58899 -14.36154 -14.17511 -13.86960 -13.80688 -13.46891 -13.18783 -13.08945 -12.72448 -12.45728 -11.87740 -11.65932 -11.50197 -11.16050 -11.04847 -10.89167 -10.81192 -10.71758 -10.61127 -10.49133 -10.39490 -10.28587 -10.08208 -9.61432 -9.57614 -9.44531 -8.87666 -7.21069 -5.75755 -3.10895 0.24498 0.95341 1.83005 2.42449 2.52556 2.83706 2.87040 3.38688 3.41771 3.46269 3.80372 3.93071 4.24594 4.42592 4.60595 4.63750 4.72171 4.79974 4.86800 5.01470 5.11407 5.22361 5.27062 5.46044 5.47677 5.50942 5.56148 5.60829 5.75243 5.81856 5.82973 5.94573 5.99053 6.04228 6.10369 6.19338 6.21988 6.35953 6.55720 6.77986 6.82165 6.96397 7.41725 7.70998 8.01223 8.43711 9.23331 9.95959 10.16246 11.42829 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.048473 B = 0.001292 C = 0.001261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.508032 B =21661.366518 C =22197.200588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.131 4.131 15 C 0.118 3.882 16 N -0.725 5.725 17 C 0.584 3.416 18 O -0.528 6.528 19 C -0.236 4.236 20 C 0.049 3.951 21 O -0.152 6.152 22 C -0.090 4.090 23 C 0.611 3.389 24 N -0.843 5.843 25 O -0.517 6.517 26 C -0.060 4.060 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.398 0.602 42 H 0.222 0.778 43 H 0.408 0.592 44 H 0.411 0.589 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.589 -24.873 0.033 40.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.169 4.169 15 C -0.005 4.005 16 N -0.377 5.377 17 C 0.371 3.629 18 O -0.405 6.405 19 C -0.241 4.241 20 C -0.024 4.024 21 O -0.046 6.046 22 C -0.142 4.142 23 C 0.396 3.604 24 N -0.406 5.406 25 O -0.394 6.394 26 C -0.081 4.081 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.239 0.761 43 H 0.237 0.763 44 H 0.243 0.757 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 32.332 -23.911 0.032 40.213 hybrid contribution 0.024 0.485 0.007 0.485 sum 32.356 -23.426 0.039 39.946 Atomic orbital electron populations 1.69707 1.05115 1.25814 1.57748 1.24680 0.95255 0.97239 1.02076 0.86524 0.79211 0.84883 0.77792 1.21066 1.21698 1.20333 1.19089 0.80761 0.94750 1.42872 0.89273 1.42746 1.04069 1.02420 1.91179 1.20635 0.88915 0.89170 0.98375 1.21784 0.96259 0.96965 1.01891 1.21489 0.93467 0.98018 1.02154 1.21522 0.95269 0.96030 1.02687 1.21832 0.92745 0.99442 1.02867 1.21504 0.91112 0.84957 1.02960 1.45865 1.05738 1.10265 1.75845 1.17207 0.81796 0.87428 0.76465 1.90839 1.68164 1.32260 1.49226 1.20757 0.94590 0.93923 1.14813 1.25127 0.93300 0.86395 0.97590 1.83906 1.14111 1.36998 1.69568 1.21846 0.84615 0.91649 1.16053 1.16471 0.85257 0.82584 0.76133 1.43676 1.13326 1.06495 1.77128 1.90975 1.34793 1.63418 1.50175 1.21932 0.95190 0.95237 0.95739 0.93082 0.80711 0.95729 0.95770 0.92129 0.92112 0.91884 0.91898 0.91589 0.91579 0.91150 0.91145 0.91032 0.91037 0.76799 0.76134 0.76336 0.75678 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.74 13.97 55.49 0.78 -28.97 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.40 27.73 -169.99 -4.71 17.69 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -18.52 5.41 -59.91 -0.32 -18.84 16 10 C 0.16 3.01 6.26 -4.04 -0.03 2.99 16 11 C -0.13 -1.91 5.33 -26.74 -0.14 -2.05 16 12 C -0.11 -1.21 5.21 -26.73 -0.14 -1.35 16 13 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 14 C -0.13 -0.81 5.33 -26.73 -0.14 -0.95 16 15 C 0.12 0.85 5.67 -4.04 -0.02 0.83 16 16 N -0.73 -4.42 5.55 -61.36 -0.34 -4.76 16 17 C 0.58 5.30 7.82 -12.49 -0.10 5.20 16 18 O -0.53 -7.18 16.94 5.28 0.09 -7.09 16 19 C -0.24 -1.64 6.16 -104.95 -0.65 -2.28 16 20 C 0.05 0.16 11.64 30.58 0.36 0.52 16 21 O -0.15 -0.66 10.32 6.20 0.06 -0.60 16 22 C -0.09 -0.60 7.09 -36.91 -0.26 -0.86 16 23 C 0.61 4.27 8.06 -12.81 -0.10 4.17 16 24 N -0.84 -2.28 8.87 30.28 0.27 -2.01 16 25 O -0.52 -5.65 17.68 5.21 0.09 -5.56 16 26 C -0.06 -0.49 10.41 -39.03 -0.41 -0.90 16 27 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 28 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.40 1.01 7.42 -40.82 -0.30 0.70 16 42 H 0.22 -0.33 7.46 -52.49 -0.39 -0.72 16 43 H 0.41 0.14 8.57 -40.82 -0.35 -0.21 16 44 H 0.41 0.53 8.93 -40.82 -0.36 0.17 16 45 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -39.08 387.43 -7.00 -46.08 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.72 Total: 1.31 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.03 Total: -3.09 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.38 Total: -54.58 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.25 Total: -13.24 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.08 -7.00 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179129294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.610 kcal (2) G-P(sol) polarization free energy of solvation -39.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds