Wall clock time and date at job start Tue Mar 31 2020 14:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00022 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00176 * 3 2 1 6 6 H 1.48497 * 109.46659 * 150.00107 * 3 2 1 7 7 C 1.38811 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99820 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99619 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47351 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47291 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46990 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46708 * 180.02562 * 15 14 13 17 17 C 1.34784 * 119.99893 * 180.02562 * 16 15 14 18 18 O 1.21597 * 119.99617 * 359.97438 * 17 16 15 19 19 C 1.47492 * 119.99978 * 179.72599 * 17 16 15 20 20 C 1.37808 * 126.77333 * 359.68770 * 19 17 16 21 21 O 1.33499 * 108.33963 * 179.82868 * 20 19 17 22 22 C 1.34878 * 109.89003 * 0.44486 * 21 20 19 23 23 C 1.46775 * 125.65718 * 179.75902 * 22 21 20 24 24 N 1.34771 * 119.99606 * 359.96084 * 23 22 21 25 25 O 1.21681 * 120.00014 * 179.97438 * 23 22 21 26 26 C 1.36064 * 108.69217 * 359.72092 * 22 21 20 27 27 H 0.96999 * 120.00170 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00534 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.47372 * 59.99309 * 10 9 7 30 30 H 1.09007 * 109.47120 * 299.99839 * 10 9 7 31 31 H 1.09000 * 109.47369 * 59.99881 * 11 10 9 32 32 H 1.09002 * 109.46959 * 299.99563 * 11 10 9 33 33 H 1.08998 * 109.47285 * 60.00109 * 12 11 10 34 34 H 1.09002 * 109.46807 * 299.99711 * 12 11 10 35 35 H 1.09005 * 109.47338 * 59.99437 * 13 12 11 36 36 H 1.08999 * 109.47071 * 300.00393 * 13 12 11 37 37 H 1.09000 * 109.46641 * 59.99885 * 14 13 12 38 38 H 1.08994 * 109.47288 * 300.00186 * 14 13 12 39 39 H 1.08998 * 109.46692 * 60.00542 * 15 14 13 40 40 H 1.08994 * 109.47584 * 300.00406 * 15 14 13 41 41 H 0.97005 * 120.00261 * 0.02562 * 16 15 14 42 42 H 1.07997 * 125.82831 * 359.97438 * 20 19 17 43 43 H 0.97002 * 120.00580 * 359.97438 * 24 23 22 44 44 H 0.97008 * 120.00058 * 180.02562 * 24 23 22 45 45 H 1.07992 * 126.69012 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4707 -0.0022 11 6 5.6164 -2.1911 -0.0032 12 6 6.3815 -3.5161 -0.0038 13 6 7.8857 -3.2365 -0.0042 14 6 8.6508 -4.5615 -0.0041 15 6 10.1550 -4.2818 -0.0051 16 7 10.8875 -5.5505 -0.0056 17 6 12.2354 -5.5505 -0.0060 18 8 12.8433 -4.4974 -0.0065 19 6 12.9729 -6.8278 -0.0005 20 6 12.4294 -8.0941 0.0115 21 8 13.4282 -8.9799 0.0091 22 6 14.6131 -8.3354 0.0058 23 6 15.9345 -8.9742 0.0076 24 7 16.0332 -10.3183 0.0137 25 8 16.9409 -8.2903 0.0038 26 6 14.3803 -6.9948 -0.0002 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3620 -0.0014 29 1 3.8486 -3.0418 -0.8924 30 1 3.8493 -3.0429 0.8876 31 1 5.8805 -1.6199 0.8868 32 1 5.8790 -1.6192 -0.8932 33 1 6.1176 -4.0877 -0.8936 34 1 6.1188 -4.0876 0.8864 35 1 8.1494 -2.6650 0.8858 36 1 8.1488 -2.6647 -0.8941 37 1 8.3872 -5.1332 -0.8939 38 1 8.3877 -5.1329 0.8860 39 1 10.4188 -3.7099 0.8845 40 1 10.4178 -3.7106 -0.8954 41 1 10.4026 -6.3906 -0.0057 42 1 11.3755 -8.3297 0.0189 43 1 15.2309 -10.8635 0.0173 44 1 16.9065 -10.7405 0.0152 45 1 15.1231 -6.2110 -0.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179129294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:05 Heat of formation + Delta-G solvation = -103.098094 kcal Electronic energy + Delta-G solvation = -24745.076682 eV Core-core repulsion = 20762.378420 eV Total energy + Delta-G solvation = -3982.698262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.95088 -40.63969 -40.31567 -37.96146 -36.84505 -35.37817 -35.02251 -34.29165 -33.64399 -32.04958 -31.00093 -28.52326 -25.95974 -24.87963 -24.48019 -23.24962 -22.28859 -22.13372 -21.92520 -20.86480 -19.84577 -19.58024 -18.16166 -17.66050 -17.51600 -17.16754 -17.02113 -16.85966 -16.57370 -16.25764 -15.79438 -15.62194 -15.44978 -15.26980 -14.88352 -14.73161 -14.34626 -14.17582 -14.09897 -13.79755 -13.46294 -13.29904 -13.02849 -12.66494 -12.45127 -12.07001 -11.88654 -11.84368 -11.78733 -11.77125 -11.56963 -11.30677 -11.27825 -11.18777 -10.96753 -10.91124 -10.21798 -9.88353 -9.30302 -8.04239 -5.37847 -0.16806 0.39971 1.37677 1.41161 1.41313 1.48798 1.89404 1.99928 2.23433 2.47856 2.49262 3.27321 3.34393 3.58899 3.63476 3.85436 3.92422 4.05636 4.20540 4.25401 4.27147 4.31515 4.39918 4.61564 4.63982 4.70190 4.80379 4.85952 4.91943 4.99981 5.01379 5.08028 5.17785 5.30706 5.33106 5.41637 5.42191 5.55862 5.58715 5.71487 5.74573 6.20547 6.23915 6.48744 7.06146 7.07253 7.14686 7.84488 8.03271 9.17387 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.048473 B = 0.001292 C = 0.001261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.508032 B =21661.366518 C =22197.200588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.241 4.241 8 H 0.056 0.944 9 N -0.764 5.764 10 C 0.150 3.850 11 C -0.122 4.122 12 C -0.105 4.105 13 C -0.115 4.115 14 C -0.118 4.118 15 C 0.119 3.881 16 N -0.706 5.706 17 C 0.583 3.417 18 O -0.587 6.587 19 C -0.269 4.269 20 C 0.098 3.902 21 O -0.139 6.139 22 C -0.093 4.093 23 C 0.608 3.392 24 N -0.817 5.817 25 O -0.568 6.568 26 C -0.085 4.085 27 H 0.259 0.741 28 H 0.366 0.634 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.419 0.581 42 H 0.279 0.721 43 H 0.422 0.578 44 H 0.420 0.580 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.149 -26.850 0.061 41.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.372 4.372 8 H 0.074 0.926 9 N -0.409 5.409 10 C 0.024 3.976 11 C -0.160 4.160 12 C -0.143 4.143 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.004 4.004 16 N -0.358 5.358 17 C 0.371 3.629 18 O -0.469 6.469 19 C -0.273 4.273 20 C 0.025 3.975 21 O -0.031 6.031 22 C -0.145 4.145 23 C 0.393 3.607 24 N -0.381 5.381 25 O -0.449 6.449 26 C -0.107 4.107 27 H 0.067 0.933 28 H 0.199 0.801 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.257 0.743 42 H 0.294 0.706 43 H 0.254 0.746 44 H 0.254 0.746 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 32.893 -26.013 0.061 41.936 hybrid contribution -0.258 0.938 -0.005 0.972 sum 32.635 -25.075 0.056 41.156 Atomic orbital electron populations 1.69891 1.07179 1.26793 1.59621 1.25550 0.96170 1.01401 1.02441 0.85366 0.78632 0.79332 0.78208 1.20287 1.22042 1.17637 1.19098 0.82932 0.93564 1.41604 0.92635 1.42817 1.02552 1.04561 1.91014 1.20881 0.91681 0.87088 0.97978 1.21713 0.93005 0.99308 1.01961 1.21422 0.94218 0.95811 1.02884 1.21461 0.93958 0.97372 1.02514 1.21705 0.91060 0.98383 1.04375 1.21402 0.92036 0.85258 1.01715 1.45659 1.04800 1.10994 1.74375 1.17525 0.82487 0.87391 0.75484 1.90807 1.69440 1.34390 1.52227 1.20594 0.93954 0.94617 1.18144 1.26081 0.94741 0.84429 0.92280 1.83947 1.13541 1.36598 1.69017 1.21575 0.85310 0.91021 1.16549 1.16578 0.84788 0.83529 0.75834 1.43506 1.14662 1.05097 1.74849 1.90947 1.36340 1.64733 1.52872 1.21904 0.95966 0.95698 0.97089 0.93264 0.80131 0.95889 0.95980 0.92128 0.91992 0.91155 0.91202 0.91890 0.91851 0.89602 0.89599 0.92432 0.92436 0.74314 0.70599 0.74579 0.74640 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.96 45.86 27.73 68.60 1.90 47.76 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 7 C -0.24 -14.08 10.47 84.03 0.88 -13.20 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -36.43 5.41 -343.45 -1.86 -38.29 16 10 C 0.15 5.57 6.26 86.38 0.54 6.11 16 11 C -0.12 -3.27 5.33 30.59 0.16 -3.10 16 12 C -0.11 -1.92 5.21 30.59 0.16 -1.76 16 13 C -0.11 -1.63 5.21 30.59 0.16 -1.47 16 14 C -0.12 -1.04 5.33 30.60 0.16 -0.88 16 15 C 0.12 1.52 5.67 86.38 0.49 2.01 16 16 N -0.71 -6.90 5.55 -466.31 -2.59 -9.48 16 17 C 0.58 10.25 7.82 86.68 0.68 10.93 16 18 O -0.59 -16.84 16.94 -4.02 -0.07 -16.91 16 19 C -0.27 -3.40 6.16 -20.08 -0.12 -3.52 16 20 C 0.10 0.24 11.64 67.72 0.79 1.03 16 21 O -0.14 -0.76 10.32 -0.72 -0.01 -0.76 16 22 C -0.09 -1.18 7.09 24.00 0.17 -1.01 16 23 C 0.61 8.43 8.06 86.48 0.70 9.13 16 24 N -0.82 -3.20 8.87 -176.33 -1.56 -4.77 16 25 O -0.57 -13.23 17.68 -4.29 -0.08 -13.31 16 26 C -0.09 -1.46 10.41 22.63 0.24 -1.23 16 27 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.37 16.53 5.53 -92.71 -0.51 16.02 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.42 0.27 7.42 -92.70 -0.69 -0.42 16 42 H 0.28 -2.74 7.46 -2.91 -0.02 -2.76 16 43 H 0.42 -0.79 8.57 -92.71 -0.79 -1.59 16 44 H 0.42 0.52 8.93 -92.70 -0.83 -0.31 16 45 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -90.37 387.43 -0.32 -90.69 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -1.83 Total: 8.86 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.47 Total: -0.34 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -5.70 Total: -116.00 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.15 Total: -30.97 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -90.37 -0.32 -90.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179129294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.412 kcal (2) G-P(sol) polarization free energy of solvation -90.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds