Wall clock time and date at job start Tue Mar 31 2020 13:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36085 * 116.99896 * 2 1 4 4 C 1.38569 * 119.92811 * 359.97438 * 3 2 1 5 5 C 1.38302 * 120.42902 * 179.97438 * 4 3 2 6 6 C 1.38475 * 120.27184 * 359.76472 * 5 4 3 7 7 O 1.35746 * 120.06899 * 180.26060 * 6 5 4 8 8 C 1.42900 * 117.00373 * 0.27212 * 7 6 5 9 9 C 1.40252 * 119.85105 * 0.53052 * 6 5 4 10 10 C 1.47255 * 120.20881 * 179.71919 * 9 6 5 11 11 O 1.21623 * 120.00171 * 269.72990 * 10 9 6 12 12 N 1.34777 * 119.99800 * 89.45637 * 10 9 6 13 13 C 1.46499 * 120.00195 * 180.27780 * 12 10 9 14 14 C 1.52990 * 109.47304 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47532 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47778 * 179.97438 * 15 14 13 17 17 H 1.08010 * 119.99443 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00313 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00096 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46973 * 90.00363 * 20 18 16 22 22 H 1.48505 * 109.47151 * 210.00008 * 20 18 16 23 23 H 1.48500 * 109.47089 * 330.00542 * 20 18 16 24 24 C 1.38929 * 119.92448 * 179.97438 * 3 2 1 25 25 O 1.35752 * 120.14066 * 359.97438 * 24 3 2 26 26 C 1.42901 * 116.99923 * 270.01883 * 25 24 3 27 27 H 1.09001 * 109.46833 * 60.00279 * 1 2 3 28 28 H 1.09009 * 109.47262 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47379 * 299.99639 * 1 2 3 30 30 H 1.07997 * 119.78961 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.86572 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46737 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47080 * 300.00328 * 8 7 6 34 34 H 1.08999 * 109.46969 * 60.00235 * 8 7 6 35 35 H 0.97000 * 119.99736 * 0.27052 * 12 10 9 36 36 H 1.08998 * 109.46795 * 299.99885 * 13 12 10 37 37 H 1.09002 * 109.47196 * 59.99076 * 13 12 10 38 38 H 1.09006 * 109.47037 * 299.99466 * 14 13 12 39 39 H 1.09002 * 109.47663 * 59.99467 * 14 13 12 40 40 H 1.08998 * 109.46729 * 300.00089 * 15 14 13 41 41 H 1.09002 * 109.47033 * 59.99141 * 15 14 13 42 42 H 0.97003 * 120.00172 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.47160 * 60.00277 * 26 25 24 44 44 H 1.08997 * 109.46948 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.47418 * 300.00032 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.2906 2.3737 -0.0005 5 6 1.9077 3.6114 0.0000 6 6 3.2894 3.7026 0.0060 7 8 3.8907 4.9196 0.0118 8 6 3.0367 6.0653 0.0175 9 6 4.0661 2.5348 0.0003 10 6 5.5360 2.6226 0.0003 11 8 6.1431 2.6588 -1.0529 12 7 6.2083 2.6683 1.1676 13 6 7.6703 2.7617 1.1677 14 6 8.1789 2.7983 2.6101 15 6 9.7058 2.8952 2.6103 16 6 10.2068 2.9319 4.0311 17 1 9.5060 2.8905 4.8520 18 6 11.5595 3.0181 4.2831 19 7 12.4127 3.0689 3.2835 20 14 12.1805 3.0627 6.0443 21 1 12.4334 1.6773 6.5153 22 1 13.4419 3.8441 6.1048 23 1 11.1599 3.7023 6.9130 24 6 3.4343 1.2834 0.0005 25 8 4.1749 0.1458 0.0016 26 6 4.5280 -0.3973 1.2754 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.2124 2.3119 -0.0014 31 1 1.3094 4.5106 0.0000 32 1 3.6435 6.9707 0.0213 33 1 2.4074 6.0538 -0.8725 34 1 2.4077 6.0452 0.9074 35 1 5.7240 2.6394 2.0075 36 1 8.0897 1.8956 0.6560 37 1 7.9762 3.6718 0.6517 38 1 7.7594 3.6648 3.1214 39 1 7.8729 1.8884 3.1265 40 1 10.1249 2.0286 2.0991 41 1 10.0122 3.8049 2.0938 42 1 13.3645 3.1292 3.4608 43 1 3.6220 -0.6372 1.8318 44 1 5.1180 -1.3027 1.1334 45 1 5.1137 0.3340 1.8325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191614234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:34 Heat of formation + Delta-G solvation = -151.690094 kcal Electronic energy + Delta-G solvation = -27483.203660 eV Core-core repulsion = 23466.105539 eV Total energy + Delta-G solvation = -4017.098121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10180 -40.48990 -40.12678 -39.08707 -37.06919 -36.83930 -35.21612 -33.23355 -32.02757 -30.74203 -28.77682 -28.44068 -27.84203 -27.69662 -25.54058 -24.07804 -23.04650 -22.36598 -21.58945 -19.83051 -18.95455 -18.53292 -18.44661 -17.84002 -17.54400 -17.11702 -16.87613 -16.55679 -16.53042 -16.41719 -16.08212 -15.83026 -15.70039 -15.15176 -15.06526 -14.28630 -14.15910 -13.80076 -13.78306 -13.76797 -13.48242 -13.46183 -12.79371 -12.75176 -12.59118 -12.55418 -12.46941 -12.39681 -12.08724 -11.70204 -11.68524 -11.39282 -11.32733 -11.22304 -10.92528 -10.55485 -10.20035 -10.08305 -8.86726 -8.19158 -6.30981 -0.27232 0.17484 1.40271 1.41642 1.43392 1.54346 1.98982 2.06543 2.21214 2.41917 2.50212 2.81279 3.14494 3.52835 3.76693 3.94604 3.97688 4.12686 4.16670 4.27703 4.32213 4.34739 4.35539 4.42230 4.42593 4.46616 4.51440 4.58128 4.71285 4.75131 4.80014 4.90839 4.92300 5.00547 5.03476 5.14241 5.22209 5.34188 5.50792 5.69174 5.83488 6.06524 6.21556 6.26254 6.40763 6.51789 6.86100 7.07965 7.38571 8.93146 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002688 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.743111 B =10415.184104 C =11243.056680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.069 3.931 4 C -0.124 4.124 5 C -0.162 4.162 6 C 0.132 3.868 7 O -0.338 6.338 8 C 0.016 3.984 9 C -0.172 4.172 10 C 0.579 3.421 11 O -0.579 6.579 12 N -0.703 5.703 13 C 0.130 3.870 14 C -0.099 4.099 15 C 0.025 3.975 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.260 1.260 24 C 0.115 3.885 25 O -0.346 6.346 26 C 0.031 3.969 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.069 0.931 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.107 -0.336 -3.198 33.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.023 3.977 4 C -0.142 4.142 5 C -0.180 4.180 6 C 0.086 3.914 7 O -0.252 6.252 8 C -0.078 4.078 9 C -0.177 4.177 10 C 0.365 3.635 11 O -0.459 6.459 12 N -0.353 5.353 13 C 0.007 3.993 14 C -0.137 4.137 15 C -0.013 4.013 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.184 1.184 24 C 0.069 3.931 25 O -0.263 6.263 26 C -0.062 4.062 27 H 0.088 0.912 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.199 0.801 31 H 0.197 0.803 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.011 0.989 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -32.131 -0.535 -4.111 32.397 hybrid contribution 0.623 0.220 0.903 1.119 sum -31.508 -0.315 -3.209 31.673 Atomic orbital electron populations 1.23452 0.76005 1.05810 1.02791 1.86176 1.23664 1.25330 1.88958 1.19088 0.90190 0.86631 1.01773 1.21470 1.02031 0.89710 1.01010 1.21390 0.91279 1.00423 1.04917 1.18748 0.91558 0.84038 0.97095 1.86108 1.37902 1.12984 1.88212 1.23476 0.95943 0.85120 1.03270 1.19182 0.92435 0.92408 1.13656 1.18084 0.87123 0.74646 0.83626 1.90764 1.70542 1.51523 1.33075 1.45961 1.07628 1.73399 1.08345 1.21308 0.78686 1.00694 0.98653 1.21588 0.96804 1.02154 0.93114 1.18932 0.91201 0.95072 0.96080 1.21657 0.92488 1.50273 0.93379 0.91475 1.26040 0.97422 0.94761 1.01924 1.70121 1.02659 1.51479 1.33335 0.85395 0.77778 0.78375 0.79172 1.19774 1.21030 1.18356 1.17694 0.87599 0.84479 1.03299 1.86010 1.70997 1.37967 1.31284 1.23234 1.00728 0.99187 0.83061 0.91205 0.86676 0.90708 0.80106 0.80295 0.87244 0.90670 0.90010 0.75224 0.93061 0.93191 0.91377 0.91189 0.98918 0.99004 0.92801 0.91465 0.87534 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.33 -6.22 10.28 -80.41 -0.83 -7.05 16 3 C 0.07 1.45 6.69 22.51 0.15 1.60 16 4 C -0.12 -1.67 9.02 22.36 0.20 -1.47 16 5 C -0.16 -2.36 9.02 22.34 0.20 -2.16 16 6 C 0.13 3.17 6.70 22.82 0.15 3.32 16 7 O -0.34 -8.32 9.95 -90.70 -0.90 -9.22 16 8 C 0.02 0.19 9.81 113.37 1.11 1.30 16 9 C -0.17 -5.23 5.65 -19.95 -0.11 -5.34 16 10 C 0.58 21.69 6.31 86.61 0.55 22.24 16 11 O -0.58 -27.18 17.11 -4.10 -0.07 -27.25 16 12 N -0.70 -23.63 5.18 -466.56 -2.42 -26.05 16 13 C 0.13 5.11 5.67 86.38 0.49 5.60 16 14 C -0.10 -4.01 5.27 30.59 0.16 -3.85 16 15 C 0.02 1.33 4.97 29.85 0.15 1.48 16 16 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 19 N -0.94 -58.00 13.29 21.44 0.28 -57.72 16 20 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 24 C 0.11 3.24 5.75 22.91 0.13 3.37 16 25 O -0.35 -10.70 9.65 -76.67 -0.74 -11.44 16 26 C 0.03 0.74 11.13 113.37 1.26 2.00 16 27 H 0.07 0.35 7.65 -2.39 -0.02 0.33 16 28 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 30 H 0.18 0.88 6.26 -2.91 -0.02 0.86 16 31 H 0.18 1.15 6.27 -2.91 -0.02 1.13 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 0.64 7.64 -2.39 -0.02 0.62 16 34 H 0.08 0.60 7.67 -2.39 -0.02 0.58 16 35 H 0.41 11.26 8.42 -92.71 -0.78 10.48 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.07 7.74 -2.39 -0.02 1.05 16 Total: -1.00 -83.92 383.46 3.83 -80.09 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.22 Total: 13.22 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.25 Total: -0.81 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.13 Total: -83.77 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -2.54 Total: -54.96 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -83.92 3.83 -80.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191614234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.601 kcal (2) G-P(sol) polarization free energy of solvation -83.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds