Wall clock time and date at job start Tue Mar 31 2020 14:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35452 * 126.77528 * 2 1 4 4 C 1.41378 * 103.98706 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.80427 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47048 * 125.00229 * 5 4 3 7 7 O 1.21277 * 120.00088 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.47506 * 118.75688 * 359.97438 * 8 6 5 10 10 C 1.53577 * 111.02505 * 138.37566 * 9 8 6 11 11 C 1.51531 * 109.58276 * 320.02015 * 10 9 8 12 12 O 1.42157 * 108.76277 * 91.40090 * 11 10 9 13 13 C 1.38014 * 119.43652 * 272.77791 * 12 11 10 14 14 H 1.09002 * 109.46972 * 303.42229 * 13 12 11 15 15 C 1.53000 * 109.46837 * 183.42652 * 13 12 11 16 16 N 1.46493 * 109.47092 * 64.99856 * 15 13 12 17 17 C 1.36938 * 120.00143 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99598 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00304 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99757 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99831 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47146 * 60.00156 * 21 19 17 23 23 H 1.48505 * 109.46689 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47352 * 300.00057 * 21 19 17 25 25 C 1.45122 * 118.75719 * 180.02562 * 8 6 5 26 26 N 1.30174 * 106.39432 * 0.26711 * 4 3 2 27 27 O 1.20924 * 111.60258 * 359.53349 * 26 4 3 28 28 H 1.09007 * 109.47064 * 89.99690 * 1 2 3 29 29 H 1.08998 * 109.47253 * 209.99657 * 1 2 3 30 30 H 1.09004 * 109.47419 * 329.99600 * 1 2 3 31 31 H 1.08004 * 128.00906 * 359.95144 * 3 2 1 32 32 H 1.09005 * 109.47061 * 5.00332 * 5 4 3 33 33 H 1.08996 * 109.47458 * 245.00316 * 5 4 3 34 34 H 1.08995 * 109.16865 * 17.97304 * 9 8 6 35 35 H 1.08998 * 109.16748 * 258.76901 * 9 8 6 36 36 H 1.09004 * 109.45206 * 199.98247 * 10 9 8 37 37 H 1.09002 * 109.45314 * 80.05458 * 10 9 8 38 38 H 1.09003 * 109.58958 * 331.61962 * 11 10 9 39 39 H 1.09003 * 109.59014 * 211.18347 * 11 10 9 40 40 H 1.09002 * 109.46780 * 184.99717 * 15 13 12 41 41 H 1.09001 * 109.47266 * 304.99602 * 15 13 12 42 42 H 0.96998 * 120.00240 * 359.97438 * 16 15 13 43 43 H 0.97005 * 119.99314 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.46410 * 149.26544 * 25 8 6 45 45 H 1.09002 * 109.46014 * 29.30711 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9210 1.3001 0.0003 6 6 5.7665 0.8523 1.1646 7 8 5.3545 -0.0025 1.9199 8 7 6.9806 1.4016 1.3665 9 6 7.4548 2.4385 0.4307 10 6 8.1487 3.5837 1.1828 11 6 7.3882 3.8885 2.4575 12 8 7.9355 3.1103 3.5137 13 6 7.4618 1.8323 3.7305 14 1 6.3842 1.8666 3.8910 15 6 8.1427 1.2386 4.9654 16 7 7.7530 2.0031 6.1527 17 6 8.2426 1.6539 7.3830 18 1 8.9157 0.8146 7.4779 19 6 7.8737 2.3785 8.5081 20 7 7.0538 3.4016 8.3922 21 14 8.5411 1.9016 10.1863 22 1 10.0234 1.9897 10.1729 23 1 7.9991 2.8252 11.2152 24 1 8.1308 0.5106 10.5052 25 6 7.7723 0.9498 2.4957 26 7 3.4764 -0.7563 -0.0049 27 8 2.3095 -1.0735 0.0004 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 2.0344 2.1271 -0.0007 32 1 4.7162 2.3670 0.0892 33 1 5.4544 1.1089 -0.9308 34 1 6.6046 2.8371 -0.1226 35 1 8.1597 1.9922 -0.2707 36 1 8.1702 4.4721 0.5515 37 1 9.1689 3.2899 1.4302 38 1 6.3362 3.6359 2.3247 39 1 7.4845 4.9477 2.6961 40 1 7.8358 0.1996 5.0852 41 1 9.2246 1.2859 4.8417 42 1 7.1488 2.7570 6.0674 43 1 6.7964 3.9082 9.1784 44 1 8.8316 1.0274 2.2509 45 1 7.5266 -0.0884 2.7193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200134712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:52 Heat of formation + Delta-G solvation = 4.661998 kcal Electronic energy + Delta-G solvation = -27816.298386 eV Core-core repulsion = 23838.272952 eV Total energy + Delta-G solvation = -3978.025434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.06066 -40.59837 -38.52511 -35.67038 -34.91391 -34.54169 -33.60564 -32.83110 -30.91366 -30.31299 -28.33027 -28.00377 -26.62057 -25.03277 -23.33490 -22.76595 -21.75414 -20.98083 -20.72526 -18.85390 -17.95068 -17.47564 -17.23668 -17.01822 -16.53069 -16.35038 -15.88293 -15.08264 -14.95489 -14.47604 -14.24840 -14.13833 -13.83330 -13.59473 -13.52181 -13.29225 -13.04977 -13.01753 -12.81713 -12.64865 -12.49045 -12.23728 -11.97953 -11.62385 -11.37164 -11.25549 -10.96605 -10.78623 -10.73231 -10.37768 -10.25423 -10.03074 -9.77280 -9.62657 -9.46981 -9.39531 -8.79251 -8.55477 -6.81432 -5.66206 -2.94246 1.33714 2.00702 2.51656 2.84167 2.96437 3.51057 3.54337 3.56030 3.86935 3.96599 4.12710 4.39532 4.56967 4.64929 4.70076 4.74870 4.83571 4.87318 4.92946 5.04729 5.08653 5.22557 5.26308 5.31007 5.34648 5.41933 5.44105 5.49515 5.60517 5.62421 5.66824 5.81861 5.85848 5.96853 6.01597 6.11679 6.36911 6.50025 6.70401 6.82078 7.17257 7.77371 8.01950 8.08160 8.16981 8.52194 9.63471 10.21851 10.57890 11.56795 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002982 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.778543 B = 9387.784520 C =10656.711117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.229 4.229 4 C 0.026 3.974 5 C -0.061 4.061 6 C 0.507 3.493 7 O -0.515 6.515 8 N -0.610 5.610 9 C 0.104 3.896 10 C -0.167 4.167 11 C 0.073 3.927 12 O -0.368 6.368 13 C 0.090 3.910 14 H 0.051 0.949 15 C 0.166 3.834 16 N -0.726 5.726 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.082 3.918 26 N -0.336 5.336 27 O 0.104 5.896 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.035 0.965 41 H 0.027 0.973 42 H 0.386 0.614 43 H 0.254 0.746 44 H 0.083 0.917 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 -0.106 -26.036 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.251 4.251 4 C -0.134 4.134 5 C -0.101 4.101 6 C 0.294 3.706 7 O -0.389 6.389 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.205 4.205 11 C -0.003 4.003 12 O -0.286 6.286 13 C 0.029 3.971 14 H 0.069 0.931 15 C 0.038 3.962 16 N -0.370 5.370 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.041 4.041 26 N -0.037 5.037 27 O 0.035 5.965 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.188 0.812 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.775 -1.617 -25.393 26.606 hybrid contribution -0.293 0.875 0.644 1.125 sum -8.068 -0.742 -24.749 26.041 Atomic orbital electron populations 1.20328 0.84056 1.04801 1.03911 1.24484 0.96430 0.86242 1.02823 1.22341 0.91062 1.01004 1.10655 1.22761 0.95956 0.90232 1.04411 1.20052 0.90568 1.00311 0.99171 1.20384 0.81729 0.82237 0.86295 1.90790 1.70616 1.30917 1.46579 1.47909 1.17621 1.39883 1.29038 1.22025 0.99697 0.88693 0.91422 1.22518 1.01674 0.98093 0.98245 1.22111 0.96133 0.95806 0.86297 1.86438 1.63981 1.26500 1.51694 1.22285 0.98330 0.82434 0.94011 0.93091 1.20607 0.96717 0.94167 0.84722 1.42218 1.56892 1.36260 1.01638 1.19196 1.22153 1.10848 0.84618 0.91234 1.24735 1.00291 0.98198 0.97867 1.69673 1.38363 1.21427 1.28761 0.86250 0.78337 0.77425 0.84076 1.21301 1.21736 1.21308 1.22444 0.95450 1.00508 0.85743 1.73881 0.96446 1.16113 1.17287 1.84856 1.11347 1.33213 1.67128 0.89501 0.89759 0.89058 0.81167 0.86703 0.87106 0.90032 0.91305 0.89618 0.89858 0.93616 0.89257 0.94792 0.95475 0.77978 0.93591 0.89827 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.00 0.38 0.01 16 2 C -0.04 -0.35 7.49 -35.30 -0.26 -0.61 16 3 C -0.23 -2.23 11.05 -39.38 -0.44 -2.66 16 4 C 0.03 0.32 6.10 -82.10 -0.50 -0.18 16 5 C -0.06 -0.60 4.63 -29.04 -0.13 -0.73 16 6 C 0.51 7.16 7.62 -10.99 -0.08 7.08 16 7 O -0.51 -9.86 15.03 5.56 0.08 -9.77 16 8 N -0.61 -7.63 2.19 -172.41 -0.38 -8.00 16 9 C 0.10 0.86 6.00 -3.19 -0.02 0.84 16 10 C -0.17 -1.52 5.78 -27.17 -0.16 -1.67 16 11 C 0.07 0.95 6.37 36.41 0.23 1.18 16 12 O -0.37 -6.63 9.38 -26.53 -0.25 -6.88 16 13 C 0.09 1.66 2.68 -25.72 -0.07 1.59 16 14 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 15 C 0.17 3.67 5.92 -4.05 -0.02 3.65 16 16 N -0.73 -19.96 5.54 -59.91 -0.33 -20.29 16 17 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 18 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -29.53 13.06 55.49 0.72 -28.80 16 21 Si 0.91 23.32 29.55 -169.99 -5.02 18.29 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.08 1.23 4.87 -3.77 -0.02 1.21 16 26 N -0.34 -4.97 11.48 33.42 0.38 -4.59 16 27 O 0.10 1.34 11.20 17.19 0.19 1.54 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.11 0.78 7.41 -51.93 -0.38 0.39 16 33 H 0.11 0.82 8.04 -51.93 -0.42 0.40 16 34 H 0.08 0.45 5.88 -51.93 -0.31 0.15 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 38 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.39 11.27 7.65 -40.82 -0.31 10.96 16 43 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 45 H 0.09 1.53 7.27 -51.93 -0.38 1.16 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -38.75 370.46 -7.15 -45.90 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.79 Total: 5.06 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.34 Total: 1.96 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.40 Total: -61.68 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.03 Total: -15.11 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.75 -7.15 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200134712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.559 kcal (2) G-P(sol) polarization free energy of solvation -38.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds