Wall clock time and date at job start Tue Mar 31 2020 14:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35452 * 126.77528 * 2 1 4 4 C 1.41378 * 103.98706 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.80427 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47048 * 125.00229 * 5 4 3 7 7 O 1.21277 * 120.00088 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.47506 * 118.75688 * 359.97438 * 8 6 5 10 10 C 1.53577 * 111.02505 * 138.37566 * 9 8 6 11 11 C 1.51531 * 109.58276 * 320.02015 * 10 9 8 12 12 O 1.42157 * 108.76277 * 91.40090 * 11 10 9 13 13 C 1.38014 * 119.43652 * 272.77791 * 12 11 10 14 14 H 1.09002 * 109.46972 * 303.42229 * 13 12 11 15 15 C 1.53000 * 109.46837 * 183.42652 * 13 12 11 16 16 N 1.46493 * 109.47092 * 64.99856 * 15 13 12 17 17 C 1.36938 * 120.00143 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99598 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00304 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99757 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99831 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47146 * 60.00156 * 21 19 17 23 23 H 1.48505 * 109.46689 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47352 * 300.00057 * 21 19 17 25 25 C 1.45122 * 118.75719 * 180.02562 * 8 6 5 26 26 N 1.30174 * 106.39432 * 0.26711 * 4 3 2 27 27 O 1.20924 * 111.60258 * 359.53349 * 26 4 3 28 28 H 1.09007 * 109.47064 * 89.99690 * 1 2 3 29 29 H 1.08998 * 109.47253 * 209.99657 * 1 2 3 30 30 H 1.09004 * 109.47419 * 329.99600 * 1 2 3 31 31 H 1.08004 * 128.00906 * 359.95144 * 3 2 1 32 32 H 1.09005 * 109.47061 * 5.00332 * 5 4 3 33 33 H 1.08996 * 109.47458 * 245.00316 * 5 4 3 34 34 H 1.08995 * 109.16865 * 17.97304 * 9 8 6 35 35 H 1.08998 * 109.16748 * 258.76901 * 9 8 6 36 36 H 1.09004 * 109.45206 * 199.98247 * 10 9 8 37 37 H 1.09002 * 109.45314 * 80.05458 * 10 9 8 38 38 H 1.09003 * 109.58958 * 331.61962 * 11 10 9 39 39 H 1.09003 * 109.59014 * 211.18347 * 11 10 9 40 40 H 1.09002 * 109.46780 * 184.99717 * 15 13 12 41 41 H 1.09001 * 109.47266 * 304.99602 * 15 13 12 42 42 H 0.96998 * 120.00240 * 359.97438 * 16 15 13 43 43 H 0.97005 * 119.99314 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.46410 * 149.26544 * 25 8 6 45 45 H 1.09002 * 109.46014 * 29.30711 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9210 1.3001 0.0003 6 6 5.7665 0.8523 1.1646 7 8 5.3545 -0.0025 1.9199 8 7 6.9806 1.4016 1.3665 9 6 7.4548 2.4385 0.4307 10 6 8.1487 3.5837 1.1828 11 6 7.3882 3.8885 2.4575 12 8 7.9355 3.1103 3.5137 13 6 7.4618 1.8323 3.7305 14 1 6.3842 1.8666 3.8910 15 6 8.1427 1.2386 4.9654 16 7 7.7530 2.0031 6.1527 17 6 8.2426 1.6539 7.3830 18 1 8.9157 0.8146 7.4779 19 6 7.8737 2.3785 8.5081 20 7 7.0538 3.4016 8.3922 21 14 8.5411 1.9016 10.1863 22 1 10.0234 1.9897 10.1729 23 1 7.9991 2.8252 11.2152 24 1 8.1308 0.5106 10.5052 25 6 7.7723 0.9498 2.4957 26 7 3.4764 -0.7563 -0.0049 27 8 2.3095 -1.0735 0.0004 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 2.0344 2.1271 -0.0007 32 1 4.7162 2.3670 0.0892 33 1 5.4544 1.1089 -0.9308 34 1 6.6046 2.8371 -0.1226 35 1 8.1597 1.9922 -0.2707 36 1 8.1702 4.4721 0.5515 37 1 9.1689 3.2899 1.4302 38 1 6.3362 3.6359 2.3247 39 1 7.4845 4.9477 2.6961 40 1 7.8358 0.1996 5.0852 41 1 9.2246 1.2859 4.8417 42 1 7.1488 2.7570 6.0674 43 1 6.7964 3.9082 9.1784 44 1 8.8316 1.0274 2.2509 45 1 7.5266 -0.0884 2.7193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200134712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:51 Heat of formation + Delta-G solvation = -23.527638 kcal Electronic energy + Delta-G solvation = -27817.520780 eV Core-core repulsion = 23838.272952 eV Total energy + Delta-G solvation = -3979.247829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.89753 -41.69941 -39.77129 -36.95501 -36.28623 -35.71836 -34.38829 -34.20669 -32.68752 -31.36746 -29.72409 -28.60104 -27.67985 -26.62185 -24.69882 -24.01912 -22.96713 -22.32374 -21.63197 -19.77607 -19.29567 -18.85045 -18.34017 -18.06754 -17.75236 -17.56170 -16.97245 -16.56428 -16.19800 -15.84176 -15.33231 -15.17144 -15.00640 -14.81422 -14.62123 -14.35135 -14.04490 -13.97161 -13.92232 -13.67095 -13.53377 -13.20829 -13.17184 -13.09252 -12.75066 -12.64757 -12.32128 -12.17234 -12.04272 -12.02406 -11.84741 -11.49072 -11.25895 -10.99719 -10.82815 -10.57353 -10.21758 -9.69226 -9.04984 -7.96597 -5.26963 0.57762 1.20279 1.44480 1.48943 1.49619 1.55518 1.91713 2.29501 2.54405 2.70711 3.10359 3.36388 3.38758 3.58841 3.64562 3.86162 3.97004 4.04791 4.10285 4.12322 4.16379 4.26515 4.30189 4.36179 4.44260 4.48820 4.52527 4.62157 4.66652 4.74317 4.75520 4.84929 4.86125 4.91557 5.03420 5.05731 5.13480 5.20244 5.27600 5.43876 5.48943 6.21075 6.23871 6.73253 7.05969 7.29782 7.36836 8.02936 8.29017 9.27168 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.002982 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.778543 B = 9387.784520 C =10656.711117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.038 4.038 3 C -0.236 4.236 4 C 0.011 3.989 5 C -0.053 4.053 6 C 0.499 3.501 7 O -0.578 6.578 8 N -0.607 5.607 9 C 0.097 3.903 10 C -0.156 4.156 11 C 0.062 3.938 12 O -0.397 6.397 13 C 0.109 3.891 14 H 0.016 0.984 15 C 0.162 3.838 16 N -0.740 5.740 17 C -0.252 4.252 18 H 0.077 0.923 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.981 3.019 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.095 3.905 26 N -0.386 5.386 27 O 0.079 5.921 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.203 0.797 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.096 0.904 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 1.296 -28.260 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C -0.257 4.257 4 C -0.149 4.149 5 C -0.093 4.093 6 C 0.288 3.712 7 O -0.457 6.457 8 N -0.339 5.339 9 C -0.024 4.024 10 C -0.194 4.194 11 C -0.014 4.014 12 O -0.316 6.316 13 C 0.049 3.951 14 H 0.034 0.966 15 C 0.035 3.965 16 N -0.383 5.383 17 C -0.383 4.383 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.809 3.191 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.029 4.029 26 N -0.091 5.091 27 O 0.013 5.987 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.220 0.780 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.122 0.878 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.577 -0.216 -27.685 28.704 hybrid contribution -0.382 0.498 1.279 1.425 sum -7.959 0.281 -26.406 27.581 Atomic orbital electron populations 1.20564 0.80964 1.05773 1.05635 1.25373 0.98151 0.85507 1.01133 1.22794 0.89906 1.02535 1.10438 1.23375 0.97935 0.90004 1.03538 1.20238 0.89025 1.01835 0.98206 1.21221 0.82028 0.81259 0.86701 1.90766 1.72035 1.33830 1.49073 1.48036 1.16969 1.40440 1.28495 1.22448 1.01821 0.87376 0.90708 1.22441 1.00232 1.00069 0.96656 1.22458 0.96656 0.95365 0.86918 1.86357 1.64587 1.26366 1.54331 1.21822 0.95480 0.83741 0.94094 0.96570 1.20739 0.97232 0.93646 0.84866 1.42412 1.56731 1.36337 1.02781 1.19649 1.21995 1.10912 0.85781 0.90536 1.25672 1.00936 0.98373 1.01944 1.69849 1.39894 1.22693 1.29646 0.85110 0.78047 0.77183 0.78784 1.20017 1.21765 1.20409 1.22086 0.96873 0.98443 0.85544 1.73869 0.97521 1.17918 1.19806 1.84787 1.11402 1.34672 1.67821 0.87235 0.89512 0.87284 0.77967 0.82881 0.83977 0.86356 0.88714 0.85640 0.90912 0.93754 0.88556 0.95221 0.94829 0.79519 0.93905 0.87777 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.45 71.24 0.74 0.15 16 2 C -0.04 -0.70 7.49 25.04 0.19 -0.52 16 3 C -0.24 -4.19 11.05 22.40 0.25 -3.94 16 4 C 0.01 0.25 6.10 43.58 0.27 0.52 16 5 C -0.05 -0.91 4.63 29.10 0.13 -0.78 16 6 C 0.50 13.78 7.62 87.66 0.67 14.45 16 7 O -0.58 -23.15 15.03 -3.02 -0.05 -23.20 16 8 N -0.61 -14.24 2.19 -817.76 -1.79 -16.03 16 9 C 0.10 1.18 6.00 86.38 0.52 1.70 16 10 C -0.16 -2.26 5.78 30.31 0.18 -2.09 16 11 C 0.06 1.50 6.37 71.50 0.46 1.96 16 12 O -0.40 -14.43 9.38 -117.86 -1.11 -15.54 16 13 C 0.11 4.18 2.68 31.25 0.08 4.27 16 14 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 15 C 0.16 7.46 5.92 86.38 0.51 7.97 16 16 N -0.74 -42.23 5.54 -343.45 -1.90 -44.13 16 17 C -0.25 -15.24 9.99 84.03 0.84 -14.41 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 19 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 20 N -0.97 -62.81 13.06 21.65 0.28 -62.53 16 21 Si 0.98 48.45 29.55 68.60 2.03 50.48 16 22 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 25 C 0.10 2.88 4.87 87.29 0.43 3.30 16 26 N -0.39 -11.75 11.48 -49.56 -0.57 -12.32 16 27 O 0.08 2.11 11.20 71.69 0.80 2.92 16 28 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.15 1.37 7.41 -2.38 -0.02 1.35 16 33 H 0.14 1.53 8.04 -2.39 -0.02 1.51 16 34 H 0.12 0.62 5.88 -2.39 -0.01 0.61 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.07 1.27 8.01 -2.39 -0.02 1.25 16 38 H 0.04 1.08 7.40 -2.39 -0.02 1.06 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.37 22.81 7.65 -92.71 -0.71 22.10 16 43 H 0.25 15.67 8.31 -92.70 -0.77 14.90 16 44 H 0.10 2.68 8.11 -2.39 -0.02 2.66 16 45 H 0.07 2.48 7.27 -2.39 -0.02 2.46 16 Total: -1.00 -90.85 370.46 3.72 -87.13 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.30 Total: 24.87 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.72 Total: 8.35 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -3.98 Total: -135.01 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.35 Total: -35.82 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -90.85 3.72 -87.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200134712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.606 kcal (2) G-P(sol) polarization free energy of solvation -90.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds