Wall clock time and date at job start Tue Mar 31 2020 14:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35452 * 126.77777 * 2 1 4 4 C 1.41374 * 103.99121 * 180.13700 * 3 2 1 5 5 C 1.50696 * 126.80618 * 179.88889 * 4 3 2 6 6 C 1.50699 * 109.47242 * 124.71136 * 5 4 3 7 7 O 1.21284 * 120.00032 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00363 * 180.02562 * 6 5 4 9 9 C 1.47516 * 118.75420 * 359.97438 * 8 6 5 10 10 C 1.53574 * 111.02765 * 221.60255 * 9 8 6 11 11 C 1.51540 * 109.57865 * 39.97960 * 10 9 8 12 12 O 1.42159 * 108.76306 * 268.59880 * 11 10 9 13 13 C 1.38014 * 119.43443 * 87.22605 * 12 11 10 14 14 H 1.08992 * 109.47307 * 56.57121 * 13 12 11 15 15 C 1.52997 * 109.46988 * 176.57174 * 13 12 11 16 16 N 1.46501 * 109.46675 * 300.00894 * 15 13 12 17 17 C 1.36943 * 119.99466 * 179.97438 * 16 15 13 18 18 H 1.07992 * 120.00453 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99566 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46849 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47217 * 119.99896 * 21 19 17 24 24 H 1.48496 * 109.47268 * 240.00067 * 21 19 17 25 25 C 1.45118 * 118.76190 * 179.97438 * 8 6 5 26 26 N 1.30181 * 106.39192 * 359.62392 * 4 3 2 27 27 O 1.20921 * 111.60500 * 0.24339 * 26 4 3 28 28 H 1.09003 * 109.47099 * 180.29925 * 1 2 3 29 29 H 1.08999 * 109.47795 * 300.30234 * 1 2 3 30 30 H 1.09004 * 109.46856 * 60.30424 * 1 2 3 31 31 H 1.08004 * 128.00422 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47508 * 4.70935 * 5 4 3 33 33 H 1.09005 * 109.47177 * 244.70506 * 5 4 3 34 34 H 1.09004 * 109.16600 * 342.00581 * 9 8 6 35 35 H 1.09000 * 109.16254 * 101.20560 * 9 8 6 36 36 H 1.08995 * 109.45084 * 160.00882 * 10 9 8 37 37 H 1.08994 * 109.45496 * 279.94770 * 10 9 8 38 38 H 1.08998 * 109.58908 * 148.81600 * 11 10 9 39 39 H 1.08999 * 109.58516 * 28.38300 * 11 10 9 40 40 H 1.08999 * 109.46965 * 60.00516 * 15 13 12 41 41 H 1.08995 * 109.47533 * 180.02562 * 15 13 12 42 42 H 0.97000 * 120.00439 * 359.97438 * 16 15 13 43 43 H 0.97006 * 120.00207 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.46240 * 210.75090 * 25 8 6 45 45 H 1.09001 * 109.45959 * 330.72655 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5374 -0.0033 5 6 4.9210 1.3001 -0.0070 6 6 5.7669 0.8570 1.1588 7 8 5.3547 0.0060 1.9183 8 7 6.9810 1.4072 1.3582 9 6 7.4550 2.4403 0.4180 10 6 8.9394 2.2385 0.0799 11 6 9.2263 0.7596 -0.0842 12 8 9.6309 0.2302 1.1715 13 6 8.6737 -0.2210 2.0576 14 1 8.0640 -0.9853 1.5758 15 6 9.3589 -0.8166 3.2890 16 7 10.2119 -1.9352 2.8799 17 6 10.9303 -2.6272 3.8182 18 1 10.8684 -2.3481 4.8596 19 6 11.7381 -3.6875 3.4306 20 7 11.8132 -4.0280 2.1615 21 14 12.7186 -4.6311 4.7104 22 1 12.4614 -4.0549 6.0547 23 1 12.3066 -6.0577 4.6967 24 1 14.1667 -4.5310 4.3972 25 6 7.7726 0.9608 2.4896 26 7 3.4763 -0.7563 0.0033 27 8 2.3095 -1.0736 0.0052 28 1 -0.3633 -1.0277 0.0054 29 1 -0.3634 0.5185 0.8872 30 1 -0.3633 0.5091 -0.8927 31 1 2.0344 2.1271 0.0004 32 1 4.7163 2.3673 0.0775 33 1 5.4541 1.1050 -0.9375 34 1 6.8683 2.3858 -0.4991 35 1 7.3212 3.4234 0.8694 36 1 9.1742 2.7590 -0.8485 37 1 9.5532 2.6400 0.8862 38 1 10.0244 0.6209 -0.8135 39 1 8.3255 0.2481 -0.4234 40 1 9.9685 -0.0522 3.7709 41 1 8.6031 -1.1733 3.9886 42 1 10.2678 -2.1857 1.9445 43 1 12.3774 -4.7692 1.8907 44 1 8.3958 1.7821 2.8433 45 1 7.1093 0.6367 3.2916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200134757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:55 Heat of formation + Delta-G solvation = 5.187740 kcal Electronic energy + Delta-G solvation = -27796.900727 eV Core-core repulsion = 23818.898090 eV Total energy + Delta-G solvation = -3978.002636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.07109 -40.59534 -38.51432 -35.66473 -34.91689 -34.51673 -33.62345 -32.81871 -30.89366 -30.31573 -28.32905 -28.02848 -26.60521 -25.02266 -23.33098 -22.77432 -21.74958 -20.96721 -20.70006 -18.86734 -17.95139 -17.48304 -17.19055 -17.04801 -16.50143 -16.34160 -15.91797 -15.06077 -14.91972 -14.45062 -14.27064 -14.13231 -13.83129 -13.65404 -13.57488 -13.28225 -13.05906 -12.99153 -12.82586 -12.58334 -12.52042 -12.22631 -11.95930 -11.62533 -11.35558 -11.25263 -10.94869 -10.77006 -10.74531 -10.38499 -10.22486 -9.96754 -9.76724 -9.61731 -9.48348 -9.36893 -8.78381 -8.54891 -6.78976 -5.64277 -2.92272 1.32903 1.99969 2.49775 2.85002 2.96287 3.51195 3.55961 3.58803 3.87685 3.98871 4.10076 4.39815 4.57301 4.65689 4.70040 4.75393 4.82971 4.84355 4.93882 5.01447 5.06512 5.20901 5.26865 5.28965 5.36506 5.40681 5.46227 5.50232 5.58649 5.63544 5.68656 5.80680 5.87120 5.98981 6.02734 6.13457 6.39199 6.50321 6.71651 6.83678 7.17063 7.79844 8.04356 8.07872 8.18339 8.54026 9.65497 10.24395 10.60591 11.58798 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002866 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.980897 B = 9767.700863 C =10998.611422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.230 4.230 4 C 0.023 3.977 5 C -0.061 4.061 6 C 0.507 3.493 7 O -0.516 6.516 8 N -0.610 5.610 9 C 0.104 3.896 10 C -0.167 4.167 11 C 0.073 3.927 12 O -0.367 6.367 13 C 0.089 3.911 14 H 0.051 0.949 15 C 0.167 3.833 16 N -0.725 5.725 17 C -0.235 4.235 18 H 0.071 0.929 19 C -0.016 4.016 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.082 3.918 26 N -0.332 5.332 27 O 0.107 5.893 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.026 0.974 41 H 0.034 0.966 42 H 0.387 0.613 43 H 0.253 0.747 44 H 0.084 0.916 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.263 19.484 -9.615 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.252 4.252 4 C -0.136 4.136 5 C -0.101 4.101 6 C 0.294 3.706 7 O -0.390 6.390 8 N -0.344 5.344 9 C -0.018 4.018 10 C -0.205 4.205 11 C -0.004 4.004 12 O -0.285 6.285 13 C 0.029 3.971 14 H 0.069 0.931 15 C 0.038 3.962 16 N -0.370 5.370 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.041 4.041 26 N -0.032 5.032 27 O 0.037 5.963 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.187 0.813 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.221 0.779 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.351 17.950 -8.974 28.581 hybrid contribution 0.037 0.381 0.189 0.427 sum -20.314 18.331 -8.785 28.738 Atomic orbital electron populations 1.20321 0.84128 1.04735 1.03907 1.24496 0.96437 0.86332 1.02940 1.22290 0.91053 1.00898 1.10954 1.22778 0.95911 0.90231 1.04693 1.20050 0.90532 1.00269 0.99249 1.20391 0.81751 0.82007 0.86498 1.90787 1.71456 1.30453 1.46295 1.47915 1.17067 1.40530 1.28915 1.22031 0.96279 0.90801 0.92717 1.22515 0.95334 0.99264 1.03411 1.22115 1.00192 0.91529 0.86562 1.86442 1.35573 1.80184 1.26268 1.22258 0.89747 0.93302 0.91827 0.93093 1.20607 0.93312 0.90638 0.91609 1.42222 1.52307 1.34337 1.08097 1.19282 1.18716 1.08964 0.89695 0.91151 1.24742 1.00879 0.99427 0.96134 1.69694 1.43369 1.30899 1.14154 0.86107 0.79747 0.79756 0.80550 1.20585 1.21948 1.21939 1.22411 0.94669 0.98393 0.88638 1.73950 0.96321 1.16115 1.16777 1.84896 1.11352 1.33179 1.66887 0.89847 0.89274 0.89270 0.81254 0.86767 0.87040 0.90057 0.91266 0.89630 0.89840 0.89234 0.93620 0.95605 0.94847 0.77864 0.93690 0.89811 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.00 0.38 0.05 16 2 C -0.04 -0.35 7.49 -35.31 -0.26 -0.62 16 3 C -0.23 -2.09 11.05 -39.38 -0.44 -2.53 16 4 C 0.02 0.29 6.10 -82.10 -0.50 -0.22 16 5 C -0.06 -0.59 4.63 -29.04 -0.13 -0.73 16 6 C 0.51 7.12 7.62 -10.99 -0.08 7.03 16 7 O -0.52 -9.79 15.02 5.55 0.08 -9.71 16 8 N -0.61 -7.60 2.19 -172.49 -0.38 -7.98 16 9 C 0.10 0.86 6.00 -3.19 -0.02 0.84 16 10 C -0.17 -1.57 5.79 -27.17 -0.16 -1.73 16 11 C 0.07 0.99 6.37 36.42 0.23 1.22 16 12 O -0.37 -6.79 9.18 -26.53 -0.24 -7.03 16 13 C 0.09 1.68 2.73 -25.80 -0.07 1.61 16 14 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 15 C 0.17 3.72 5.95 -4.04 -0.02 3.70 16 16 N -0.73 -20.16 5.49 -59.91 -0.33 -20.49 16 17 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 18 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -29.84 13.06 55.49 0.72 -29.11 16 21 Si 0.91 23.51 29.55 -169.99 -5.02 18.48 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 24 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 25 C 0.08 1.23 4.86 -3.85 -0.02 1.21 16 26 N -0.33 -5.09 11.46 33.42 0.38 -4.70 16 27 O 0.11 1.41 11.20 17.17 0.19 1.60 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.17 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.11 0.68 8.04 -51.93 -0.42 0.26 16 33 H 0.11 0.90 7.41 -51.93 -0.38 0.52 16 34 H 0.08 0.47 5.88 -51.93 -0.31 0.16 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.39 11.47 7.53 -40.82 -0.31 11.16 16 43 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 45 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -39.27 370.14 -7.15 -46.42 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.79 Total: 4.87 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.35 Total: 2.07 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.40 Total: -62.29 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.03 Total: -15.14 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.02 Total: 18.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.27 -7.15 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200134757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.607 kcal (2) G-P(sol) polarization free energy of solvation -39.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds