Wall clock time and date at job start Tue Mar 31 2020 14:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35452 * 126.77777 * 2 1 4 4 C 1.41374 * 103.99121 * 180.13700 * 3 2 1 5 5 C 1.50696 * 126.80618 * 179.88889 * 4 3 2 6 6 C 1.50699 * 109.47242 * 124.71136 * 5 4 3 7 7 O 1.21284 * 120.00032 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00363 * 180.02562 * 6 5 4 9 9 C 1.47516 * 118.75420 * 359.97438 * 8 6 5 10 10 C 1.53574 * 111.02765 * 221.60255 * 9 8 6 11 11 C 1.51540 * 109.57865 * 39.97960 * 10 9 8 12 12 O 1.42159 * 108.76306 * 268.59880 * 11 10 9 13 13 C 1.38014 * 119.43443 * 87.22605 * 12 11 10 14 14 H 1.08992 * 109.47307 * 56.57121 * 13 12 11 15 15 C 1.52997 * 109.46988 * 176.57174 * 13 12 11 16 16 N 1.46501 * 109.46675 * 300.00894 * 15 13 12 17 17 C 1.36943 * 119.99466 * 179.97438 * 16 15 13 18 18 H 1.07992 * 120.00453 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99566 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00224 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46849 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47217 * 119.99896 * 21 19 17 24 24 H 1.48496 * 109.47268 * 240.00067 * 21 19 17 25 25 C 1.45118 * 118.76190 * 179.97438 * 8 6 5 26 26 N 1.30181 * 106.39192 * 359.62392 * 4 3 2 27 27 O 1.20921 * 111.60500 * 0.24339 * 26 4 3 28 28 H 1.09003 * 109.47099 * 180.29925 * 1 2 3 29 29 H 1.08999 * 109.47795 * 300.30234 * 1 2 3 30 30 H 1.09004 * 109.46856 * 60.30424 * 1 2 3 31 31 H 1.08004 * 128.00422 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47508 * 4.70935 * 5 4 3 33 33 H 1.09005 * 109.47177 * 244.70506 * 5 4 3 34 34 H 1.09004 * 109.16600 * 342.00581 * 9 8 6 35 35 H 1.09000 * 109.16254 * 101.20560 * 9 8 6 36 36 H 1.08995 * 109.45084 * 160.00882 * 10 9 8 37 37 H 1.08994 * 109.45496 * 279.94770 * 10 9 8 38 38 H 1.08998 * 109.58908 * 148.81600 * 11 10 9 39 39 H 1.08999 * 109.58516 * 28.38300 * 11 10 9 40 40 H 1.08999 * 109.46965 * 60.00516 * 15 13 12 41 41 H 1.08995 * 109.47533 * 180.02562 * 15 13 12 42 42 H 0.97000 * 120.00439 * 359.97438 * 16 15 13 43 43 H 0.97006 * 120.00207 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.46240 * 210.75090 * 25 8 6 45 45 H 1.09001 * 109.45959 * 330.72655 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5374 -0.0033 5 6 4.9210 1.3001 -0.0070 6 6 5.7669 0.8570 1.1588 7 8 5.3547 0.0060 1.9183 8 7 6.9810 1.4072 1.3582 9 6 7.4550 2.4403 0.4180 10 6 8.9394 2.2385 0.0799 11 6 9.2263 0.7596 -0.0842 12 8 9.6309 0.2302 1.1715 13 6 8.6737 -0.2210 2.0576 14 1 8.0640 -0.9853 1.5758 15 6 9.3589 -0.8166 3.2890 16 7 10.2119 -1.9352 2.8799 17 6 10.9303 -2.6272 3.8182 18 1 10.8684 -2.3481 4.8596 19 6 11.7381 -3.6875 3.4306 20 7 11.8132 -4.0280 2.1615 21 14 12.7186 -4.6311 4.7104 22 1 12.4614 -4.0549 6.0547 23 1 12.3066 -6.0577 4.6967 24 1 14.1667 -4.5310 4.3972 25 6 7.7726 0.9608 2.4896 26 7 3.4763 -0.7563 0.0033 27 8 2.3095 -1.0736 0.0052 28 1 -0.3633 -1.0277 0.0054 29 1 -0.3634 0.5185 0.8872 30 1 -0.3633 0.5091 -0.8927 31 1 2.0344 2.1271 0.0004 32 1 4.7163 2.3673 0.0775 33 1 5.4541 1.1050 -0.9375 34 1 6.8683 2.3858 -0.4991 35 1 7.3212 3.4234 0.8694 36 1 9.1742 2.7590 -0.8485 37 1 9.5532 2.6400 0.8862 38 1 10.0244 0.6209 -0.8135 39 1 8.3255 0.2481 -0.4234 40 1 9.9685 -0.0522 3.7709 41 1 8.6031 -1.1733 3.9886 42 1 10.2678 -2.1857 1.9445 43 1 12.3774 -4.7692 1.8907 44 1 8.3958 1.7821 2.8433 45 1 7.1093 0.6367 3.2916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200134757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:54 Heat of formation + Delta-G solvation = -23.766315 kcal Electronic energy + Delta-G solvation = -27798.156269 eV Core-core repulsion = 23818.898090 eV Total energy + Delta-G solvation = -3979.258178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.90167 -41.70281 -39.78173 -36.95903 -36.28159 -35.71066 -34.39555 -34.20313 -32.69094 -31.37440 -29.73714 -28.59267 -27.68776 -26.63032 -24.70672 -24.01530 -22.98047 -22.32721 -21.62267 -19.78393 -19.29868 -18.85518 -18.33385 -18.08129 -17.72249 -17.57914 -17.04273 -16.56093 -16.15951 -15.86134 -15.29552 -15.17637 -15.01093 -14.82441 -14.55472 -14.50995 -14.00495 -13.95578 -13.92179 -13.61649 -13.52429 -13.24232 -13.15280 -13.09750 -12.81964 -12.64284 -12.31913 -12.12777 -12.04915 -11.98937 -11.84819 -11.51146 -11.26410 -11.02602 -10.81630 -10.58244 -10.20868 -9.69122 -9.05513 -7.97271 -5.27790 0.59864 1.22128 1.43678 1.46751 1.47887 1.56939 1.93631 2.32837 2.53517 2.68579 3.13051 3.35855 3.38078 3.60546 3.64902 3.84705 3.96399 4.04474 4.09368 4.13461 4.18004 4.26815 4.29860 4.34948 4.43684 4.48055 4.51281 4.64036 4.66079 4.73459 4.76491 4.83452 4.85968 4.92109 5.04673 5.05813 5.11907 5.19173 5.30230 5.43573 5.48929 6.21228 6.23262 6.71330 7.06276 7.28949 7.40489 8.02591 8.28428 9.27039 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002866 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.980897 B = 9767.700863 C =10998.611422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.228 4.228 4 C 0.009 3.991 5 C -0.054 4.054 6 C 0.499 3.501 7 O -0.578 6.578 8 N -0.607 5.607 9 C 0.097 3.903 10 C -0.156 4.156 11 C 0.062 3.938 12 O -0.396 6.396 13 C 0.106 3.894 14 H 0.011 0.989 15 C 0.163 3.837 16 N -0.741 5.741 17 C -0.248 4.248 18 H 0.078 0.922 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.097 3.903 26 N -0.393 5.393 27 O 0.078 5.922 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.209 0.791 32 H 0.164 0.836 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.107 0.893 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.307 23.027 -10.136 33.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.250 4.250 4 C -0.150 4.150 5 C -0.093 4.093 6 C 0.288 3.712 7 O -0.457 6.457 8 N -0.339 5.339 9 C -0.023 4.023 10 C -0.194 4.194 11 C -0.014 4.014 12 O -0.315 6.315 13 C 0.046 3.954 14 H 0.029 0.971 15 C 0.036 3.964 16 N -0.383 5.383 17 C -0.380 4.380 18 H 0.096 0.904 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.810 3.190 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.215 1.215 25 C -0.028 4.028 26 N -0.098 5.098 27 O 0.012 5.988 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.226 0.774 32 H 0.182 0.818 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.125 0.875 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.429 21.559 -9.506 31.849 hybrid contribution 0.317 -0.670 0.288 0.795 sum -21.111 20.889 -9.218 31.097 Atomic orbital electron populations 1.20566 0.80875 1.05561 1.05866 1.25452 0.98232 0.85558 1.01241 1.22764 0.89381 1.02580 1.10227 1.23423 0.98114 0.89827 1.03633 1.20251 0.88896 1.02507 0.97672 1.21230 0.82203 0.80929 0.86859 1.90764 1.72966 1.33219 1.48757 1.48041 1.16341 1.40873 1.28688 1.22455 0.95695 0.90718 0.93419 1.22439 0.96148 0.95710 1.05125 1.22440 1.00076 0.94454 0.84443 1.86357 1.36294 1.80806 1.28065 1.21835 0.89267 0.93944 0.90369 0.97133 1.20751 0.92667 0.89453 0.93557 1.42433 1.52997 1.35732 1.07142 1.19732 1.18612 1.09200 0.90412 0.90362 1.25704 1.02419 1.00689 0.98399 1.69872 1.44456 1.31573 1.16375 0.84953 0.77783 0.77793 0.78480 1.18779 1.21969 1.21547 1.22050 0.94079 0.97369 0.89309 1.73947 0.97627 1.18426 1.19848 1.84818 1.11376 1.34923 1.67731 0.89682 0.87562 0.86703 0.77369 0.81814 0.85097 0.86712 0.87898 0.85776 0.90614 0.88831 0.94387 0.94586 0.95243 0.79549 0.93960 0.87496 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 71.23 0.74 0.26 16 2 C -0.04 -0.72 7.49 25.04 0.19 -0.54 16 3 C -0.23 -3.64 11.05 22.40 0.25 -3.39 16 4 C 0.01 0.21 6.10 43.57 0.27 0.48 16 5 C -0.05 -0.91 4.63 29.10 0.13 -0.78 16 6 C 0.50 13.71 7.62 87.66 0.67 14.37 16 7 O -0.58 -23.02 15.02 -3.04 -0.05 -23.06 16 8 N -0.61 -14.16 2.19 -818.03 -1.79 -15.96 16 9 C 0.10 1.18 6.00 86.38 0.52 1.70 16 10 C -0.16 -2.41 5.79 30.31 0.18 -2.23 16 11 C 0.06 1.63 6.37 71.50 0.46 2.09 16 12 O -0.40 -15.02 9.18 -117.85 -1.08 -16.10 16 13 C 0.11 4.19 2.73 31.20 0.09 4.28 16 14 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 15 C 0.16 7.58 5.95 86.38 0.51 8.10 16 16 N -0.74 -42.95 5.49 -343.46 -1.89 -44.84 16 17 C -0.25 -15.17 9.99 84.03 0.84 -14.33 16 18 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 19 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 20 N -0.97 -64.09 13.06 21.65 0.28 -63.81 16 21 Si 0.98 49.09 29.55 68.60 2.03 51.12 16 22 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 C 0.10 2.90 4.86 87.24 0.42 3.32 16 26 N -0.39 -12.64 11.46 -49.55 -0.57 -13.21 16 27 O 0.08 2.15 11.20 71.63 0.80 2.95 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.16 1.07 8.04 -2.39 -0.02 1.05 16 33 H 0.13 1.71 7.41 -2.38 -0.02 1.69 16 34 H 0.11 0.68 5.88 -2.38 -0.01 0.67 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 38 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.04 1.05 7.40 -2.39 -0.02 1.03 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.37 23.33 7.53 -92.71 -0.70 22.64 16 43 H 0.25 15.86 8.31 -92.70 -0.77 15.09 16 44 H 0.11 2.69 8.11 -2.39 -0.02 2.67 16 45 H 0.07 2.52 7.27 -2.39 -0.02 2.50 16 Total: -1.00 -93.62 370.14 3.77 -89.85 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.31 Total: 24.24 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.73 Total: 8.83 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -3.96 Total: -137.81 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.33 Total: -36.22 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.03 Total: 51.12 kcal Total: -93.62 3.77 -89.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200134757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.086 kcal (2) G-P(sol) polarization free energy of solvation -93.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds