Wall clock time and date at job start Tue Mar 31 2020 13:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47122 * 2 1 4 4 C 1.34227 * 117.00104 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00131 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00448 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.47705 * 180.02562 * 6 4 3 8 8 C 1.46894 * 110.99938 * 66.04383 * 7 6 4 9 9 C 1.50700 * 109.47315 * 200.04920 * 8 7 6 10 10 H 1.07998 * 120.00050 * 4.65453 * 9 8 7 11 11 C 1.37884 * 120.00040 * 184.66474 * 9 8 7 12 12 N 1.31513 * 120.00178 * 5.33213 * 11 9 8 13 13 Si 1.86804 * 119.99670 * 185.32996 * 11 9 8 14 14 H 1.48507 * 109.46786 * 94.97757 * 13 11 9 15 15 H 1.48491 * 109.47039 * 214.97563 * 13 11 9 16 16 H 1.48499 * 109.47212 * 334.98138 * 13 11 9 17 17 C 1.46898 * 111.00141 * 190.00127 * 7 6 4 18 18 C 1.50695 * 109.47300 * 72.76450 * 17 7 6 19 19 C 1.38297 * 119.99722 * 254.33060 * 18 17 7 20 20 C 1.38210 * 120.14174 * 180.27422 * 19 18 17 21 21 C 1.38280 * 120.14759 * 359.77741 * 20 19 18 22 22 C 1.38522 * 120.00060 * 359.96678 * 21 20 19 23 23 O 1.35994 * 120.07243 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00096 * 359.97438 * 23 22 21 25 25 C 1.38519 * 120.00276 * 74.10438 * 18 17 7 26 26 O 1.35989 * 120.07396 * 359.97046 * 25 18 17 27 27 H 1.08999 * 109.47023 * 59.99878 * 1 2 3 28 28 H 1.08995 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47145 * 300.00085 * 1 2 3 30 30 H 1.08997 * 109.47187 * 240.00693 * 2 1 3 31 31 H 1.08999 * 109.47515 * 120.00317 * 2 1 3 32 32 H 1.08999 * 109.47033 * 59.99513 * 6 4 3 33 33 H 1.09000 * 109.46690 * 300.00035 * 6 4 3 34 34 H 1.09004 * 109.47361 * 320.04808 * 8 7 6 35 35 H 1.09007 * 109.47292 * 80.04736 * 8 7 6 36 36 H 0.97001 * 119.99790 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.46931 * 312.75982 * 17 7 6 38 38 H 1.09001 * 109.47245 * 192.76471 * 17 7 6 39 39 H 1.07992 * 119.92899 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.92272 * 179.74322 * 20 19 18 41 41 H 1.08009 * 119.99843 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.47315 * 180.02562 * 24 23 22 43 43 H 1.09006 * 109.46919 * 299.99608 * 24 23 22 44 44 H 1.08996 * 109.47168 * 59.99521 * 24 23 22 45 45 H 0.96699 * 114.00503 * 264.60807 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9208 2.9374 0.0012 7 7 5.3877 2.8606 0.0010 8 6 5.8842 2.2776 -1.2525 9 6 7.2853 1.7622 -1.0465 10 1 7.7317 1.7896 -0.0635 11 6 7.9973 1.2558 -2.1132 12 7 7.4961 1.3181 -3.3275 13 14 9.6740 0.4811 -1.8334 14 1 9.5224 -0.9895 -1.6923 15 1 10.5561 0.7790 -2.9901 16 1 10.2761 1.0377 -0.5953 17 6 5.9841 4.1817 0.2398 18 6 5.7911 4.5664 1.6840 19 6 4.8530 5.5237 2.0251 20 6 4.6775 5.8829 3.3481 21 6 5.4358 5.2834 4.3369 22 6 6.3734 4.3201 4.0026 23 8 7.1195 3.7292 4.9740 24 6 6.8846 4.1507 6.3191 25 6 6.5499 3.9579 2.6702 26 8 7.4690 3.0127 2.3370 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.5844 3.4693 0.8911 33 1 3.5851 3.4698 -0.8888 34 1 5.2350 1.4551 -1.5529 35 1 5.8884 3.0402 -2.0313 36 1 7.9969 0.9615 -4.0778 37 1 5.5008 4.9196 -0.4006 38 1 7.0495 4.1458 0.0126 39 1 4.2592 5.9944 1.2556 40 1 3.9468 6.6339 3.6101 41 1 5.2969 5.5663 5.3700 42 1 7.5441 3.6026 6.9920 43 1 7.0844 5.2188 6.4053 44 1 5.8465 3.9525 6.5858 45 1 7.1427 2.1051 2.4059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203599217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:50 Heat of formation + Delta-G solvation = -126.287694 kcal Electronic energy + Delta-G solvation = -28249.921804 eV Core-core repulsion = 24233.925214 eV Total energy + Delta-G solvation = -4015.996590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31081 -39.93481 -38.02340 -36.69755 -36.05238 -35.45544 -32.52627 -31.67807 -30.86093 -29.51401 -28.35146 -27.35337 -26.43655 -24.28230 -22.99176 -22.21579 -21.57643 -20.89759 -19.81508 -18.04336 -17.36245 -17.13340 -16.61872 -16.33375 -15.97326 -15.86107 -15.72052 -15.09407 -14.74502 -14.47568 -14.11011 -13.98711 -13.85383 -13.51052 -13.36417 -12.87371 -12.73637 -12.36030 -12.09012 -12.07675 -11.99418 -11.90602 -11.57627 -11.43432 -11.40721 -11.15624 -10.96077 -10.78971 -10.51497 -10.48664 -10.19046 -10.06507 -9.86670 -9.60088 -9.11790 -8.46396 -8.29189 -7.93089 -7.40492 -5.90320 -3.87788 1.41384 1.53208 2.81382 2.97461 3.30510 3.43018 3.48728 3.55242 3.78673 4.54177 4.63342 4.84666 4.88401 5.00425 5.02016 5.05036 5.06474 5.15392 5.20655 5.34017 5.37828 5.41502 5.46010 5.50634 5.53712 5.65522 5.70134 5.79441 5.82286 5.97041 5.99299 6.12805 6.31463 6.50823 6.52483 6.68102 6.82735 6.86981 7.20840 7.31036 7.40070 7.89106 8.06751 8.18474 8.30468 8.36232 8.59949 9.20230 9.74497 11.20994 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007297 B = 0.005538 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.140865 B = 5054.319664 C = 7665.016168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.453 3.547 5 O -0.465 6.465 6 C 0.063 3.937 7 N -0.515 5.515 8 C 0.190 3.810 9 C -0.490 4.490 10 H 0.071 0.929 11 C 0.053 3.947 12 N -0.904 5.904 13 Si 0.895 3.105 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.271 1.271 17 C 0.106 3.894 18 C -0.060 4.060 19 C -0.142 4.142 20 C -0.098 4.098 21 C -0.203 4.203 22 C 0.088 3.912 23 O -0.309 6.309 24 C 0.028 3.972 25 C 0.113 3.887 26 O -0.473 6.473 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.038 0.962 35 H -0.004 1.004 36 H 0.258 0.742 37 H 0.037 0.963 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 6.784 14.386 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.290 6.290 4 C 0.293 3.707 5 O -0.348 6.348 6 C -0.067 4.067 7 N -0.241 5.241 8 C 0.065 3.935 9 C -0.528 4.528 10 H 0.089 0.911 11 C -0.147 4.147 12 N -0.545 5.545 13 Si 0.723 3.277 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.195 1.195 17 C -0.021 4.021 18 C -0.061 4.061 19 C -0.161 4.161 20 C -0.116 4.116 21 C -0.222 4.222 22 C 0.043 3.957 23 O -0.222 6.222 24 C -0.067 4.067 25 C 0.066 3.934 26 O -0.283 6.283 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.014 0.986 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.686 6.397 14.451 19.077 hybrid contribution 0.164 -0.375 -0.301 0.509 sum -10.522 6.021 14.150 18.633 Atomic orbital electron populations 1.21779 0.93147 1.02557 1.03197 1.22894 0.94787 0.80996 1.02527 1.86463 1.25569 1.31769 1.85177 1.23719 0.79955 0.93328 0.73650 1.90746 1.59571 1.42492 1.42024 1.21552 0.92269 0.89936 1.02920 1.61875 1.00380 1.20676 1.41207 1.19932 0.96729 0.94051 0.82744 1.21138 0.97831 1.38784 0.95079 0.91111 1.24949 0.98174 0.96565 0.95018 1.69967 1.38793 1.47047 0.98679 0.86520 0.83876 0.79598 0.77678 1.20968 1.21663 1.19546 1.20897 1.02744 0.89330 0.89098 1.20246 0.93601 0.95832 0.96418 1.20935 0.99467 0.99394 0.96290 1.20801 0.98951 0.99371 0.92497 1.21032 1.00282 1.00735 1.00171 1.19599 0.92782 0.94800 0.88552 1.86168 1.58926 1.61941 1.15160 1.23013 1.01797 1.00461 0.81465 1.17583 0.93094 0.95332 0.87402 1.84806 1.35973 1.17980 1.89561 0.91638 0.90611 0.91755 0.91360 0.91569 0.88173 0.91802 0.94393 0.98591 0.93222 0.94530 0.87426 0.85793 0.86025 0.85760 0.88503 0.92951 0.92970 0.74841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -5.99 10.22 -39.25 -0.40 -6.39 16 4 C 0.45 8.62 7.47 36.01 0.27 8.89 16 5 O -0.47 -10.67 14.30 -18.75 -0.27 -10.94 16 6 C 0.06 1.09 5.40 -4.98 -0.03 1.07 16 7 N -0.52 -10.67 4.10 -238.97 -0.98 -11.65 16 8 C 0.19 4.89 4.25 -4.98 -0.02 4.87 16 9 C -0.49 -13.83 8.53 -34.44 -0.29 -14.13 16 10 H 0.07 1.99 7.76 -52.49 -0.41 1.58 16 11 C 0.05 1.54 5.45 -17.82 -0.10 1.44 16 12 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 13 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.11 1.98 4.52 -4.98 -0.02 1.96 16 18 C -0.06 -0.97 4.71 -104.50 -0.49 -1.47 16 19 C -0.14 -1.88 8.96 -39.57 -0.35 -2.23 16 20 C -0.10 -1.15 10.04 -39.58 -0.40 -1.55 16 21 C -0.20 -2.52 9.04 -39.46 -0.36 -2.88 16 22 C 0.09 1.34 6.70 -39.12 -0.26 1.08 16 23 O -0.31 -4.51 10.28 -34.21 -0.35 -4.87 16 24 C 0.03 0.26 9.81 101.05 0.99 1.26 16 25 C 0.11 1.95 6.69 -39.12 -0.26 1.69 16 26 O -0.47 -9.11 12.58 -34.19 -0.43 -9.54 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 31 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 32 H 0.10 1.51 6.74 -51.93 -0.35 1.16 16 33 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 34 H 0.04 1.08 5.86 -51.93 -0.30 0.77 16 35 H 0.00 -0.10 7.98 -51.93 -0.41 -0.52 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.04 0.62 7.84 -51.93 -0.41 0.21 16 38 H 0.11 2.32 7.24 -51.93 -0.38 1.94 16 39 H 0.12 1.39 7.99 -52.49 -0.42 0.97 16 40 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.12 1.20 6.30 -52.48 -0.33 0.87 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 44 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 45 H 0.39 7.01 9.06 45.56 0.41 7.42 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -34.42 379.12 -7.62 -42.05 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.91 Total: 4.76 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.71 Total: 0.01 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.24 Total: -38.34 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.45 Total: -31.74 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.42 -7.62 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203599217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.241 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds