Wall clock time and date at job start Tue Mar 31 2020 13:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47122 * 2 1 4 4 C 1.34227 * 117.00104 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00131 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00448 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.47705 * 180.02562 * 6 4 3 8 8 C 1.46894 * 110.99938 * 66.04383 * 7 6 4 9 9 C 1.50700 * 109.47315 * 200.04920 * 8 7 6 10 10 H 1.07998 * 120.00050 * 4.65453 * 9 8 7 11 11 C 1.37884 * 120.00040 * 184.66474 * 9 8 7 12 12 N 1.31513 * 120.00178 * 5.33213 * 11 9 8 13 13 Si 1.86804 * 119.99670 * 185.32996 * 11 9 8 14 14 H 1.48507 * 109.46786 * 94.97757 * 13 11 9 15 15 H 1.48491 * 109.47039 * 214.97563 * 13 11 9 16 16 H 1.48499 * 109.47212 * 334.98138 * 13 11 9 17 17 C 1.46898 * 111.00141 * 190.00127 * 7 6 4 18 18 C 1.50695 * 109.47300 * 72.76450 * 17 7 6 19 19 C 1.38297 * 119.99722 * 254.33060 * 18 17 7 20 20 C 1.38210 * 120.14174 * 180.27422 * 19 18 17 21 21 C 1.38280 * 120.14759 * 359.77741 * 20 19 18 22 22 C 1.38522 * 120.00060 * 359.96678 * 21 20 19 23 23 O 1.35994 * 120.07243 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00096 * 359.97438 * 23 22 21 25 25 C 1.38519 * 120.00276 * 74.10438 * 18 17 7 26 26 O 1.35989 * 120.07396 * 359.97046 * 25 18 17 27 27 H 1.08999 * 109.47023 * 59.99878 * 1 2 3 28 28 H 1.08995 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47145 * 300.00085 * 1 2 3 30 30 H 1.08997 * 109.47187 * 240.00693 * 2 1 3 31 31 H 1.08999 * 109.47515 * 120.00317 * 2 1 3 32 32 H 1.08999 * 109.47033 * 59.99513 * 6 4 3 33 33 H 1.09000 * 109.46690 * 300.00035 * 6 4 3 34 34 H 1.09004 * 109.47361 * 320.04808 * 8 7 6 35 35 H 1.09007 * 109.47292 * 80.04736 * 8 7 6 36 36 H 0.97001 * 119.99790 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.46931 * 312.75982 * 17 7 6 38 38 H 1.09001 * 109.47245 * 192.76471 * 17 7 6 39 39 H 1.07992 * 119.92899 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.92272 * 179.74322 * 20 19 18 41 41 H 1.08009 * 119.99843 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.47315 * 180.02562 * 24 23 22 43 43 H 1.09006 * 109.46919 * 299.99608 * 24 23 22 44 44 H 1.08996 * 109.47168 * 59.99521 * 24 23 22 45 45 H 0.96699 * 114.00503 * 264.60807 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9208 2.9374 0.0012 7 7 5.3877 2.8606 0.0010 8 6 5.8842 2.2776 -1.2525 9 6 7.2853 1.7622 -1.0465 10 1 7.7317 1.7896 -0.0635 11 6 7.9973 1.2558 -2.1132 12 7 7.4961 1.3181 -3.3275 13 14 9.6740 0.4811 -1.8334 14 1 9.5224 -0.9895 -1.6923 15 1 10.5561 0.7790 -2.9901 16 1 10.2761 1.0377 -0.5953 17 6 5.9841 4.1817 0.2398 18 6 5.7911 4.5664 1.6840 19 6 4.8530 5.5237 2.0251 20 6 4.6775 5.8829 3.3481 21 6 5.4358 5.2834 4.3369 22 6 6.3734 4.3201 4.0026 23 8 7.1195 3.7292 4.9740 24 6 6.8846 4.1507 6.3191 25 6 6.5499 3.9579 2.6702 26 8 7.4690 3.0127 2.3370 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.5844 3.4693 0.8911 33 1 3.5851 3.4698 -0.8888 34 1 5.2350 1.4551 -1.5529 35 1 5.8884 3.0402 -2.0313 36 1 7.9969 0.9615 -4.0778 37 1 5.5008 4.9196 -0.4006 38 1 7.0495 4.1458 0.0126 39 1 4.2592 5.9944 1.2556 40 1 3.9468 6.6339 3.6101 41 1 5.2969 5.5663 5.3700 42 1 7.5441 3.6026 6.9920 43 1 7.0844 5.2188 6.4053 44 1 5.8465 3.9525 6.5858 45 1 7.1427 2.1051 2.4059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203599217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:49 Heat of formation + Delta-G solvation = -150.705352 kcal Electronic energy + Delta-G solvation = -28250.980633 eV Core-core repulsion = 24233.925214 eV Total energy + Delta-G solvation = -4017.055419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57588 -41.23837 -39.22844 -38.10889 -37.32390 -36.97157 -34.67032 -32.73471 -32.12221 -30.54921 -30.06939 -28.48561 -27.79082 -25.91199 -24.27550 -23.35478 -23.10269 -22.12967 -21.30691 -19.27133 -18.73357 -18.59410 -18.25005 -17.63407 -17.48360 -17.17126 -16.79283 -16.59151 -16.12244 -15.90360 -15.65437 -15.15479 -15.03925 -14.86910 -14.76507 -14.16691 -14.00985 -13.73651 -13.53192 -13.33037 -13.26953 -12.98379 -12.95564 -12.81896 -12.72076 -12.50531 -12.44929 -12.33592 -12.04994 -11.88496 -11.84177 -11.49514 -11.41002 -11.25562 -11.11306 -10.53469 -9.58758 -9.10125 -9.00040 -8.14314 -6.18270 0.30978 0.46974 1.30834 1.39197 1.40609 1.53117 1.66044 2.38986 2.43605 2.69538 3.19085 3.32317 3.51000 3.85186 3.86170 4.00537 4.06023 4.13408 4.19655 4.29100 4.31621 4.36166 4.36900 4.41886 4.46716 4.48246 4.73046 4.77866 4.84353 4.88754 4.94226 5.03917 5.14675 5.18598 5.23557 5.33949 5.48741 5.49848 5.61410 5.75484 5.84099 6.11576 6.28688 6.40691 6.51986 6.92380 6.96898 6.99125 7.47958 8.96810 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007297 B = 0.005538 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.140865 B = 5054.319664 C = 7665.016168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.455 3.545 5 O -0.514 6.514 6 C 0.063 3.937 7 N -0.522 5.522 8 C 0.210 3.790 9 C -0.498 4.498 10 H 0.064 0.936 11 C 0.000 4.000 12 N -0.938 5.938 13 Si 0.959 3.041 14 H -0.280 1.280 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.115 3.885 18 C -0.075 4.075 19 C -0.139 4.139 20 C -0.083 4.083 21 C -0.194 4.194 22 C 0.078 3.922 23 O -0.338 6.338 24 C 0.018 3.982 25 C 0.072 3.928 26 O -0.497 6.497 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.009 0.991 35 H -0.029 1.029 36 H 0.260 0.740 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.149 0.851 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 8.606 16.755 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.298 3.702 5 O -0.401 6.401 6 C -0.065 4.065 7 N -0.248 5.248 8 C 0.084 3.916 9 C -0.536 4.536 10 H 0.082 0.918 11 C -0.197 4.197 12 N -0.580 5.580 13 Si 0.785 3.215 14 H -0.206 1.206 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.012 4.012 18 C -0.076 4.076 19 C -0.158 4.158 20 C -0.101 4.101 21 C -0.213 4.213 22 C 0.033 3.967 23 O -0.253 6.253 24 C -0.076 4.076 25 C 0.026 3.974 26 O -0.307 6.307 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.027 0.973 35 H -0.011 1.011 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.167 0.833 40 H 0.182 0.818 41 H 0.175 0.825 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.756 8.251 16.848 22.686 hybrid contribution 0.685 -0.887 -0.907 1.442 sum -12.071 7.365 15.941 21.309 Atomic orbital electron populations 1.21792 0.89545 1.04384 1.03924 1.23239 0.97521 0.79568 1.01858 1.86461 1.23739 1.33417 1.84375 1.24040 0.80596 0.93340 0.72251 1.90729 1.60873 1.44009 1.44519 1.21668 0.90026 0.89695 1.05132 1.61655 1.02673 1.22328 1.38110 1.19456 0.95258 0.92510 0.84341 1.21434 0.99118 1.38377 0.94718 0.91803 1.25764 1.01936 0.97147 0.94831 1.70078 1.40356 1.48164 0.99407 0.85522 0.79668 0.78580 0.77756 1.20606 1.20743 1.19229 1.20713 1.00294 0.88547 0.91668 1.20067 0.95475 0.97675 0.94366 1.21209 0.98376 0.98179 0.98021 1.21281 0.98562 0.98926 0.91310 1.21456 0.98630 0.99036 1.02184 1.19692 0.93557 0.95553 0.87925 1.86128 1.59382 1.62699 1.17045 1.23343 1.03347 1.01700 0.79197 1.17983 0.94372 0.95929 0.89153 1.84786 1.37506 1.18299 1.90112 0.91243 0.88233 0.90623 0.92773 0.91715 0.84845 0.90132 0.97303 1.01112 0.93098 0.92737 0.91516 0.83283 0.81782 0.82466 0.86994 0.91432 0.91327 0.75434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 10.29 71.98 0.74 -1.64 16 2 C 0.05 1.38 6.19 71.98 0.45 1.83 16 3 O -0.36 -11.47 10.22 -51.38 -0.53 -12.00 16 4 C 0.46 17.57 7.47 71.24 0.53 18.11 16 5 O -0.51 -24.69 14.30 21.97 0.31 -24.37 16 6 C 0.06 2.20 5.40 85.56 0.46 2.66 16 7 N -0.52 -22.40 4.10 -909.98 -3.73 -26.13 16 8 C 0.21 11.44 4.25 85.56 0.36 11.80 16 9 C -0.50 -29.58 8.53 25.60 0.22 -29.36 16 10 H 0.06 3.81 7.76 -2.91 -0.02 3.78 16 11 C 0.00 0.00 5.45 84.66 0.46 0.46 16 12 N -0.94 -58.93 13.29 21.45 0.29 -58.65 16 13 Si 0.96 47.91 29.54 68.60 2.03 49.94 16 14 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 15 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 16 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 17 C 0.11 4.39 4.52 85.56 0.39 4.77 16 18 C -0.07 -2.40 4.71 -19.78 -0.09 -2.49 16 19 C -0.14 -3.23 8.96 22.28 0.20 -3.03 16 20 C -0.08 -1.55 10.04 22.27 0.22 -1.33 16 21 C -0.19 -4.09 9.04 22.35 0.20 -3.89 16 22 C 0.08 2.29 6.70 22.57 0.15 2.45 16 23 O -0.34 -9.66 10.28 -79.64 -0.82 -10.48 16 24 C 0.02 0.30 9.81 113.37 1.11 1.41 16 25 C 0.07 2.52 6.69 22.57 0.15 2.68 16 26 O -0.50 -20.49 12.58 -79.58 -1.00 -21.49 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 32 H 0.13 3.73 6.74 -2.39 -0.02 3.71 16 33 H 0.08 2.56 8.12 -2.39 -0.02 2.54 16 34 H 0.01 0.54 5.86 -2.39 -0.01 0.53 16 35 H -0.03 -1.68 7.98 -2.38 -0.02 -1.69 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.05 1.84 7.84 -2.39 -0.02 1.82 16 38 H 0.07 3.07 7.24 -2.39 -0.02 3.05 16 39 H 0.15 2.68 7.99 -2.91 -0.02 2.66 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.16 2.23 6.30 -2.91 -0.02 2.21 16 42 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.07 0.89 7.66 -2.38 -0.02 0.87 16 44 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 45 H 0.39 15.28 9.06 -74.06 -0.67 14.60 16 Total: -1.00 -79.99 379.12 2.44 -77.55 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.33 Total: 21.21 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.56 Total: 4.42 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.44 Total: -84.77 kcal Atomic # 8 Polarization: -66.31 SS G_CDS: -2.03 Total: -68.34 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -79.99 2.44 -77.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203599217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.158 kcal (2) G-P(sol) polarization free energy of solvation -79.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds