Wall clock time and date at job start Tue Mar 31 2020 13:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47161 * 2 1 4 4 C 1.34233 * 116.99943 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99653 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99999 * 179.97438 * 4 3 2 7 7 N 1.46905 * 109.47192 * 183.89865 * 6 4 3 8 8 C 1.46893 * 111.00307 * 195.80604 * 7 6 4 9 9 C 1.50697 * 109.47191 * 76.11903 * 8 7 6 10 10 H 1.08007 * 120.00045 * 5.37154 * 9 8 7 11 11 C 1.37880 * 120.00462 * 185.37903 * 9 8 7 12 12 N 1.31516 * 119.99722 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00307 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47334 * 59.99714 * 13 11 9 15 15 H 1.48505 * 109.47027 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46922 * 299.99409 * 13 11 9 17 17 C 1.46903 * 110.99621 * 71.85289 * 7 6 4 18 18 C 1.50696 * 109.47246 * 190.00028 * 17 7 6 19 19 C 1.38199 * 119.97335 * 259.73165 * 18 17 7 20 20 C 1.38162 * 120.10991 * 179.72634 * 19 18 17 21 21 C 1.38789 * 120.05125 * 0.54085 * 20 19 18 22 22 O 1.35897 * 120.02841 * 179.70552 * 21 20 19 23 23 C 1.42900 * 116.99664 * 0.02770 * 22 21 20 24 24 C 1.38616 * 119.94943 * 359.73307 * 21 20 19 25 25 C 1.38658 * 119.88966 * 359.97438 * 24 21 20 26 26 O 1.35894 * 120.02876 * 179.97438 * 25 24 21 27 27 H 1.09001 * 109.47354 * 300.00274 * 1 2 3 28 28 H 1.08999 * 109.47151 * 60.00088 * 1 2 3 29 29 H 1.09004 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47354 * 239.99726 * 2 1 3 31 31 H 1.09000 * 109.46913 * 120.00406 * 2 1 3 32 32 H 1.09003 * 109.47050 * 63.90920 * 6 4 3 33 33 H 1.08999 * 109.47807 * 303.90329 * 6 4 3 34 34 H 1.09003 * 109.47360 * 196.11571 * 8 7 6 35 35 H 1.09000 * 109.47126 * 316.11684 * 8 7 6 36 36 H 0.96999 * 119.99958 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47008 * 310.00289 * 17 7 6 38 38 H 1.09000 * 109.46818 * 70.00285 * 17 7 6 39 39 H 1.08004 * 119.94430 * 359.97141 * 19 18 17 40 40 H 1.07992 * 119.97376 * 180.25189 * 20 19 18 41 41 H 1.09000 * 109.47211 * 299.99236 * 23 22 21 42 42 H 1.08994 * 109.47509 * 59.99555 * 23 22 21 43 43 H 1.09008 * 109.46876 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.05779 * 180.02562 * 24 21 20 45 45 H 0.96694 * 114.00412 * 270.02885 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9207 2.9373 0.0000 7 7 5.3848 2.8616 -0.0934 8 6 6.0028 4.1423 0.2749 9 6 5.9682 4.3043 1.7727 10 1 5.6106 3.4973 2.3951 11 6 6.3928 5.4829 2.3487 12 7 6.8285 6.4655 1.5909 13 14 6.3505 5.6835 4.2054 14 1 7.2078 4.6473 4.8350 15 1 6.8560 7.0316 4.5693 16 1 4.9544 5.5311 4.6880 17 6 5.8055 2.4411 -1.4367 18 6 7.2816 2.1377 -1.4288 19 6 8.1807 3.0701 -1.9109 20 6 9.5350 2.7972 -1.8998 21 6 9.9950 1.5809 -1.4146 22 8 11.3268 1.3106 -1.4095 23 6 12.1964 2.3243 -1.9178 24 6 9.0949 0.6418 -0.9358 25 6 7.7366 0.9205 -0.9423 26 8 6.8516 0.0017 -0.4741 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6415 3.4463 0.9225 33 1 3.5304 3.4917 -0.8534 34 1 7.0373 4.1586 -0.0684 35 1 5.4522 4.9590 -0.1918 36 1 7.1276 7.2945 1.9961 37 1 5.2526 1.5479 -1.7276 38 1 5.6029 3.2417 -2.1480 39 1 7.8242 4.0152 -2.2932 40 1 10.2359 3.5290 -2.2733 41 1 11.9438 2.5318 -2.9576 42 1 12.0796 3.2329 -1.3272 43 1 13.2292 1.9810 -1.8568 44 1 9.4509 -0.3050 -0.5575 45 1 6.5284 -0.6121 -1.1477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203634812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:53 Heat of formation + Delta-G solvation = -127.224471 kcal Electronic energy + Delta-G solvation = -28073.029153 eV Core-core repulsion = 24056.991941 eV Total energy + Delta-G solvation = -4016.037212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15016 -39.86008 -38.30252 -36.79327 -35.81068 -35.21902 -32.56077 -31.71722 -30.88035 -29.58375 -28.03265 -27.44966 -26.30211 -24.06897 -23.04912 -22.25928 -21.58021 -20.74963 -19.70342 -18.41551 -17.23601 -16.57749 -16.44304 -16.37072 -16.10668 -15.84118 -15.57204 -15.31220 -14.56109 -14.45457 -14.15731 -13.97731 -13.80934 -13.28419 -13.18431 -12.98890 -12.75787 -12.41230 -12.18256 -12.05248 -11.91583 -11.84366 -11.49568 -11.35898 -11.17809 -11.08063 -10.85885 -10.75617 -10.58678 -10.51481 -10.25837 -10.01656 -9.91637 -9.66485 -9.24225 -8.43607 -8.32998 -7.73756 -7.28066 -6.00549 -4.01011 1.64243 1.74539 2.79712 3.00693 3.36486 3.38938 3.39800 3.44786 3.97202 4.46289 4.76105 4.95549 4.97234 5.00781 5.06729 5.18907 5.20262 5.27071 5.30432 5.31595 5.34596 5.40996 5.50239 5.64510 5.75303 5.76631 5.82487 5.84275 5.95242 6.03213 6.14600 6.16324 6.32048 6.53039 6.70252 6.82448 6.91095 7.00745 7.15987 7.27742 7.59032 7.83654 7.99852 8.13256 8.21068 8.38352 8.52771 9.06972 9.63040 11.09536 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.005054 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.820825 B = 5538.796632 C = 8262.172620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.370 6.370 4 C 0.453 3.547 5 O -0.477 6.477 6 C 0.074 3.926 7 N -0.509 5.509 8 C 0.192 3.808 9 C -0.505 4.505 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.105 3.895 18 C -0.123 4.123 19 C -0.051 4.051 20 C -0.218 4.218 21 C 0.134 3.866 22 O -0.321 6.321 23 C 0.029 3.971 24 C -0.189 4.189 25 C 0.174 3.826 26 O -0.465 6.465 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.041 0.959 35 H -0.002 1.002 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.027 0.973 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.130 0.870 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -10.017 -10.438 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.288 6.288 4 C 0.294 3.706 5 O -0.361 6.361 6 C -0.056 4.056 7 N -0.234 5.234 8 C 0.068 3.932 9 C -0.543 4.543 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.539 5.539 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.023 4.023 18 C -0.124 4.124 19 C -0.069 4.069 20 C -0.237 4.237 21 C 0.089 3.911 22 O -0.235 6.235 23 C -0.066 4.066 24 C -0.208 4.208 25 C 0.128 3.872 26 O -0.273 6.273 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.310 -10.394 -9.481 14.129 hybrid contribution -0.170 0.768 0.076 0.790 sum -1.480 -9.626 -9.405 13.539 Atomic orbital electron populations 1.21787 0.93237 1.02462 1.03360 1.22854 0.94834 0.81242 1.02169 1.86525 1.25836 1.31464 1.84956 1.24211 0.79757 0.93738 0.72891 1.90659 1.59677 1.42530 1.43262 1.21506 0.90570 0.88820 1.04665 1.61735 1.03158 1.35203 1.23343 1.19865 0.94828 0.81900 0.96655 1.21136 1.42352 0.99369 0.91482 0.91901 1.24947 0.95470 0.95776 0.98197 1.69937 1.43789 1.05102 1.35090 0.86595 0.78456 0.76994 0.85604 1.20200 1.21419 1.20237 1.20805 0.91523 0.99074 0.90853 1.19958 0.96095 0.94785 1.01553 1.20751 0.91959 0.97821 0.96408 1.21093 0.96855 0.97094 1.08625 1.18687 0.82571 0.93598 0.96262 1.86019 1.14501 1.43058 1.79912 1.23008 0.93343 0.91695 0.98598 1.20531 0.91732 1.00808 1.07737 1.17875 0.87196 0.89535 0.92607 1.85026 1.60387 1.45314 1.36550 0.91559 0.91722 0.90716 0.91795 0.91528 0.85841 0.92223 0.94127 0.98408 0.92957 0.90971 0.95454 0.85607 0.85717 0.92853 0.92473 0.88642 0.85231 0.76622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.37 -5.72 10.22 -39.27 -0.40 -6.13 16 4 C 0.45 8.08 7.52 36.00 0.27 8.35 16 5 O -0.48 -9.30 14.04 -21.91 -0.31 -9.61 16 6 C 0.07 1.40 5.39 -4.98 -0.03 1.37 16 7 N -0.51 -11.03 4.02 -238.97 -0.96 -11.99 16 8 C 0.19 4.86 4.60 -4.98 -0.02 4.84 16 9 C -0.50 -14.20 8.54 -34.44 -0.29 -14.49 16 10 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 13 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.11 1.95 4.39 -4.98 -0.02 1.93 16 18 C -0.12 -2.28 4.67 -104.45 -0.49 -2.76 16 19 C -0.05 -0.89 8.24 -39.62 -0.33 -1.21 16 20 C -0.22 -3.53 9.04 -39.41 -0.36 -3.88 16 21 C 0.13 2.22 6.68 -39.24 -0.26 1.96 16 22 O -0.32 -4.81 10.49 -19.42 -0.20 -5.01 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 C -0.19 -3.24 9.93 -39.29 -0.39 -3.63 16 25 C 0.17 3.15 6.68 -39.23 -0.26 2.89 16 26 O -0.46 -8.22 11.93 -24.51 -0.29 -8.51 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.12 2.49 7.36 -51.93 -0.38 2.11 16 33 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 34 H 0.04 1.09 5.75 -51.93 -0.30 0.80 16 35 H 0.00 -0.05 7.99 -51.93 -0.42 -0.47 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.07 1.27 6.18 -51.93 -0.32 0.94 16 38 H 0.03 0.48 7.98 -51.93 -0.41 0.06 16 39 H 0.13 2.09 8.03 -52.48 -0.42 1.67 16 40 H 0.12 1.70 6.29 -52.49 -0.33 1.37 16 41 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 42 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 43 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 45 H 0.38 4.87 9.06 45.56 0.41 5.28 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -33.77 377.30 -7.32 -41.09 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.89 Total: 4.88 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.67 Total: -1.80 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.22 Total: -37.54 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.20 Total: -29.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.77 -7.32 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203634812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.130 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds