Wall clock time and date at job start Tue Mar 31 2020 13:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47042 * 2 1 4 4 C 1.34232 * 117.00128 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99768 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00063 * 180.02562 * 4 3 2 7 7 N 1.46906 * 109.47117 * 183.77525 * 6 4 3 8 8 C 1.46903 * 110.99430 * 287.66608 * 7 6 4 9 9 C 1.50695 * 109.47199 * 299.31620 * 8 7 6 10 10 H 1.07997 * 120.00496 * 4.61885 * 9 8 7 11 11 C 1.37884 * 119.99803 * 184.61693 * 9 8 7 12 12 N 1.31512 * 120.00351 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99593 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47191 * 60.00716 * 13 11 9 15 15 H 1.48507 * 109.46869 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47806 * 300.00251 * 13 11 9 17 17 C 1.46895 * 111.00047 * 163.71390 * 7 6 4 18 18 C 1.50707 * 109.46521 * 198.70218 * 17 7 6 19 19 C 1.38157 * 120.00230 * 256.57974 * 18 17 7 20 20 C 1.38676 * 119.99813 * 179.77604 * 19 18 17 21 21 O 1.35987 * 119.99619 * 180.25580 * 20 19 18 22 22 C 1.42902 * 116.99418 * 180.27256 * 21 20 19 23 23 C 1.38717 * 120.00061 * 0.52743 * 20 19 18 24 24 C 1.38105 * 120.00044 * 359.73081 * 23 20 19 25 25 C 1.38677 * 119.99658 * 76.86850 * 18 17 7 26 26 O 1.35979 * 120.00271 * 359.96467 * 25 18 17 27 27 H 1.09005 * 109.47041 * 300.00126 * 1 2 3 28 28 H 1.08997 * 109.47439 * 60.00085 * 1 2 3 29 29 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46985 * 240.00170 * 2 1 3 31 31 H 1.08999 * 109.46951 * 120.00071 * 2 1 3 32 32 H 1.08995 * 109.47297 * 63.77546 * 6 4 3 33 33 H 1.09001 * 109.47507 * 303.76844 * 6 4 3 34 34 H 1.08999 * 109.47203 * 59.31776 * 8 7 6 35 35 H 1.09000 * 109.46921 * 179.31491 * 8 7 6 36 36 H 0.96998 * 119.99978 * 179.97438 * 12 11 9 37 37 H 1.08996 * 109.46990 * 318.70087 * 17 7 6 38 38 H 1.08994 * 109.47468 * 78.71096 * 17 7 6 39 39 H 1.07998 * 119.99407 * 0.02562 * 19 18 17 40 40 H 1.08994 * 109.47395 * 299.99620 * 22 21 20 41 41 H 1.08998 * 109.47290 * 60.00348 * 22 21 20 42 42 H 1.09000 * 109.46535 * 180.02562 * 22 21 20 43 43 H 1.07995 * 119.99966 * 179.70053 * 23 20 19 44 44 H 1.08003 * 120.00008 * 179.97438 * 24 23 20 45 45 H 0.96702 * 113.99712 * 95.01918 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3849 2.8617 -0.0919 8 6 5.9676 2.3855 1.1697 9 6 5.6157 3.3432 2.2787 10 1 4.9577 4.1771 2.0836 11 6 6.1337 3.1547 3.5426 12 7 6.9344 2.1390 3.7804 13 14 5.6979 4.3423 4.9170 14 1 4.2279 4.3379 5.1276 15 1 6.3779 3.9218 6.1686 16 1 6.1411 5.7107 4.5481 17 6 5.9558 4.1587 -0.4790 18 6 7.3535 3.9554 -1.0046 19 6 8.4416 4.2698 -0.2135 20 6 9.7277 4.0783 -0.6956 21 8 10.7988 4.3829 0.0851 22 6 12.0942 4.1662 -0.4778 23 6 9.9217 3.5815 -1.9761 24 6 8.8340 3.2722 -2.7689 25 6 7.5474 3.4584 -2.2847 26 8 6.4764 3.1538 -3.0652 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6404 3.4462 0.9223 33 1 3.5313 3.4920 -0.8537 34 1 5.5706 1.3975 1.4032 35 1 7.0515 2.3273 1.0702 36 1 7.2991 2.0067 4.6694 37 1 5.3379 4.6106 -1.2549 38 1 5.9865 4.8160 0.3899 39 1 8.2905 4.6609 0.7818 40 1 12.2080 3.1127 -0.7330 41 1 12.2056 4.7720 -1.3771 42 1 12.8573 4.4484 0.2475 43 1 10.9233 3.4369 -2.3533 44 1 8.9850 2.8857 -3.7661 45 1 6.2132 3.8640 -3.6664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203680747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:56 Heat of formation + Delta-G solvation = -128.127826 kcal Electronic energy + Delta-G solvation = -28122.292347 eV Core-core repulsion = 24106.215963 eV Total energy + Delta-G solvation = -4016.076384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05470 -39.74713 -38.27661 -36.82706 -35.67393 -35.21494 -32.49727 -31.63301 -31.18067 -29.28383 -27.82351 -26.87948 -26.57841 -24.32579 -23.02681 -22.24409 -21.71908 -20.52881 -19.61778 -17.88590 -17.56331 -16.94882 -16.51113 -16.24048 -16.13145 -15.54545 -15.37534 -14.99893 -14.77627 -14.32521 -14.17831 -13.98168 -13.71501 -13.27460 -13.07248 -12.79610 -12.60682 -12.38118 -12.30157 -12.04673 -11.93282 -11.69501 -11.32675 -11.17669 -11.11004 -10.96731 -10.90437 -10.80712 -10.52538 -10.38852 -10.14128 -10.06548 -9.85360 -9.68294 -9.46876 -8.48249 -8.37212 -7.63832 -7.19896 -5.98586 -4.09146 1.62969 1.71663 3.01928 3.15198 3.29148 3.35152 3.35801 3.52743 3.98721 4.41388 4.63120 5.01498 5.08291 5.10410 5.14328 5.21098 5.21671 5.26286 5.31037 5.37092 5.48275 5.49220 5.54678 5.77305 5.86240 5.86696 5.91196 5.92222 5.99539 6.07306 6.24878 6.33919 6.51009 6.53577 6.65128 6.86239 6.99464 7.10467 7.26310 7.59965 7.65923 7.97742 7.99869 8.10595 8.25274 8.29094 8.58409 9.01201 9.56662 11.06188 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.004781 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.487663 B = 5855.576415 C = 8134.327470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.465 3.535 5 O -0.484 6.484 6 C 0.070 3.930 7 N -0.515 5.515 8 C 0.182 3.818 9 C -0.559 4.559 10 H 0.056 0.944 11 C 0.070 3.930 12 N -0.882 5.882 13 Si 0.885 3.115 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.105 3.895 18 C -0.043 4.043 19 C -0.111 4.111 20 C 0.113 3.887 21 O -0.315 6.315 22 C 0.030 3.970 23 C -0.200 4.200 24 C -0.120 4.120 25 C 0.087 3.913 26 O -0.481 6.481 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.263 0.737 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.140 0.860 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 4.105 -12.614 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.306 3.694 5 O -0.368 6.368 6 C -0.059 4.059 7 N -0.240 5.240 8 C 0.057 3.943 9 C -0.598 4.598 10 H 0.074 0.926 11 C -0.134 4.134 12 N -0.520 5.520 13 Si 0.712 3.288 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.023 4.023 18 C -0.044 4.044 19 C -0.130 4.130 20 C 0.068 3.932 21 O -0.229 6.229 22 C -0.066 4.066 23 C -0.219 4.219 24 C -0.139 4.139 25 C 0.042 3.958 26 O -0.289 6.289 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.158 0.842 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.371 2.850 -12.332 12.662 hybrid contribution -0.082 1.176 1.110 1.619 sum -0.453 4.026 -11.222 11.931 Atomic orbital electron populations 1.21778 0.93268 1.02419 1.03207 1.22857 0.94718 0.81294 1.02327 1.86471 1.25761 1.31467 1.85177 1.23822 0.79640 0.93369 0.72540 1.90638 1.59866 1.42931 1.43372 1.21424 0.91356 0.89673 1.03428 1.62144 1.00849 1.24575 1.36383 1.19941 0.96175 0.96101 0.82108 1.21675 1.30157 1.12396 0.95562 0.92584 1.24920 0.94780 0.95187 0.98483 1.69951 1.31411 1.28687 1.21921 0.86779 0.78605 0.81570 0.81800 1.20304 1.21226 1.20157 1.20756 0.90562 0.91942 0.99010 1.19904 0.95562 0.95841 0.93076 1.20413 0.88433 1.03223 1.00932 1.18976 0.87540 0.96860 0.89834 1.86133 1.13307 1.81841 1.41585 1.22978 0.82944 1.00956 0.99701 1.20950 0.99274 1.07183 0.94528 1.21088 0.91745 1.00979 1.00076 1.18123 0.85981 1.00667 0.90992 1.85013 1.47181 1.42218 1.54462 0.91626 0.91777 0.90748 0.91712 0.91510 0.89341 0.88988 0.93901 0.94261 0.92743 0.91701 0.91870 0.84193 0.92872 0.93097 0.88627 0.85829 0.85854 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -6.53 10.22 -39.26 -0.40 -6.93 16 4 C 0.47 9.60 7.76 36.00 0.28 9.88 16 5 O -0.48 -11.70 14.42 -18.75 -0.27 -11.97 16 6 C 0.07 1.36 5.40 -4.97 -0.03 1.34 16 7 N -0.52 -11.26 4.29 -238.97 -1.02 -12.29 16 8 C 0.18 4.83 4.71 -4.98 -0.02 4.81 16 9 C -0.56 -15.03 7.20 -34.44 -0.25 -15.27 16 10 H 0.06 1.43 6.05 -52.49 -0.32 1.12 16 11 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 12 N -0.88 -26.35 13.29 55.43 0.74 -25.61 16 13 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.10 1.97 4.60 -4.98 -0.02 1.95 16 18 C -0.04 -0.79 4.82 -104.49 -0.50 -1.29 16 19 C -0.11 -2.13 8.99 -39.45 -0.35 -2.49 16 20 C 0.11 1.96 6.69 -39.24 -0.26 1.69 16 21 O -0.32 -5.22 10.50 -19.70 -0.21 -5.42 16 22 C 0.03 0.33 9.81 101.05 0.99 1.32 16 23 C -0.20 -2.99 9.03 -39.45 -0.36 -3.34 16 24 C -0.12 -1.80 9.98 -39.45 -0.39 -2.20 16 25 C 0.09 1.47 6.68 -39.24 -0.26 1.21 16 26 O -0.48 -7.38 12.79 -19.67 -0.25 -7.64 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.09 1.78 6.13 -51.93 -0.32 1.46 16 33 H 0.09 1.44 7.69 -51.93 -0.40 1.04 16 34 H 0.04 1.29 6.31 -51.93 -0.33 0.97 16 35 H 0.04 1.15 7.01 -51.93 -0.36 0.78 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.06 1.01 7.47 -51.93 -0.39 0.62 16 38 H 0.06 1.27 6.29 -51.93 -0.33 0.94 16 39 H 0.14 2.91 8.01 -52.49 -0.42 2.49 16 40 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 41 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.12 1.47 6.29 -52.49 -0.33 1.14 16 44 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 45 H 0.37 3.62 9.06 45.56 0.41 4.04 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -34.90 374.81 -7.13 -42.02 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.67 Total: 6.58 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.67 Total: -0.61 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.29 Total: -37.90 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.13 Total: -31.96 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.90 -7.13 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203680747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.105 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds