Wall clock time and date at job start Tue Mar 31 2020 13:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47042 * 2 1 4 4 C 1.34232 * 117.00128 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99768 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00063 * 180.02562 * 4 3 2 7 7 N 1.46906 * 109.47117 * 183.77525 * 6 4 3 8 8 C 1.46903 * 110.99430 * 287.66608 * 7 6 4 9 9 C 1.50695 * 109.47199 * 299.31620 * 8 7 6 10 10 H 1.07997 * 120.00496 * 4.61885 * 9 8 7 11 11 C 1.37884 * 119.99803 * 184.61693 * 9 8 7 12 12 N 1.31512 * 120.00351 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99593 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47191 * 60.00716 * 13 11 9 15 15 H 1.48507 * 109.46869 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47806 * 300.00251 * 13 11 9 17 17 C 1.46895 * 111.00047 * 163.71390 * 7 6 4 18 18 C 1.50707 * 109.46521 * 198.70218 * 17 7 6 19 19 C 1.38157 * 120.00230 * 256.57974 * 18 17 7 20 20 C 1.38676 * 119.99813 * 179.77604 * 19 18 17 21 21 O 1.35987 * 119.99619 * 180.25580 * 20 19 18 22 22 C 1.42902 * 116.99418 * 180.27256 * 21 20 19 23 23 C 1.38717 * 120.00061 * 0.52743 * 20 19 18 24 24 C 1.38105 * 120.00044 * 359.73081 * 23 20 19 25 25 C 1.38677 * 119.99658 * 76.86850 * 18 17 7 26 26 O 1.35979 * 120.00271 * 359.96467 * 25 18 17 27 27 H 1.09005 * 109.47041 * 300.00126 * 1 2 3 28 28 H 1.08997 * 109.47439 * 60.00085 * 1 2 3 29 29 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46985 * 240.00170 * 2 1 3 31 31 H 1.08999 * 109.46951 * 120.00071 * 2 1 3 32 32 H 1.08995 * 109.47297 * 63.77546 * 6 4 3 33 33 H 1.09001 * 109.47507 * 303.76844 * 6 4 3 34 34 H 1.08999 * 109.47203 * 59.31776 * 8 7 6 35 35 H 1.09000 * 109.46921 * 179.31491 * 8 7 6 36 36 H 0.96998 * 119.99978 * 179.97438 * 12 11 9 37 37 H 1.08996 * 109.46990 * 318.70087 * 17 7 6 38 38 H 1.08994 * 109.47468 * 78.71096 * 17 7 6 39 39 H 1.07998 * 119.99407 * 0.02562 * 19 18 17 40 40 H 1.08994 * 109.47395 * 299.99620 * 22 21 20 41 41 H 1.08998 * 109.47290 * 60.00348 * 22 21 20 42 42 H 1.09000 * 109.46535 * 180.02562 * 22 21 20 43 43 H 1.07995 * 119.99966 * 179.70053 * 23 20 19 44 44 H 1.08003 * 120.00008 * 179.97438 * 24 23 20 45 45 H 0.96702 * 113.99712 * 95.01918 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3849 2.8617 -0.0919 8 6 5.9676 2.3855 1.1697 9 6 5.6157 3.3432 2.2787 10 1 4.9577 4.1771 2.0836 11 6 6.1337 3.1547 3.5426 12 7 6.9344 2.1390 3.7804 13 14 5.6979 4.3423 4.9170 14 1 4.2279 4.3379 5.1276 15 1 6.3779 3.9218 6.1686 16 1 6.1411 5.7107 4.5481 17 6 5.9558 4.1587 -0.4790 18 6 7.3535 3.9554 -1.0046 19 6 8.4416 4.2698 -0.2135 20 6 9.7277 4.0783 -0.6956 21 8 10.7988 4.3829 0.0851 22 6 12.0942 4.1662 -0.4778 23 6 9.9217 3.5815 -1.9761 24 6 8.8340 3.2722 -2.7689 25 6 7.5474 3.4584 -2.2847 26 8 6.4764 3.1538 -3.0652 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6404 3.4462 0.9223 33 1 3.5313 3.4920 -0.8537 34 1 5.5706 1.3975 1.4032 35 1 7.0515 2.3273 1.0702 36 1 7.2991 2.0067 4.6694 37 1 5.3379 4.6106 -1.2549 38 1 5.9865 4.8160 0.3899 39 1 8.2905 4.6609 0.7818 40 1 12.2080 3.1127 -0.7330 41 1 12.2056 4.7720 -1.3771 42 1 12.8573 4.4484 0.2475 43 1 10.9233 3.4369 -2.3533 44 1 8.9850 2.8857 -3.7661 45 1 6.2132 3.8640 -3.6664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203680747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:55 Heat of formation + Delta-G solvation = -154.065991 kcal Electronic energy + Delta-G solvation = -28123.417110 eV Core-core repulsion = 24106.215963 eV Total energy + Delta-G solvation = -4017.201147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46597 -41.16834 -39.52875 -38.38571 -37.20421 -36.54975 -34.59238 -32.86404 -32.43777 -30.51441 -29.68825 -28.24291 -27.84779 -26.10001 -24.38344 -23.53575 -23.19481 -21.91620 -21.27539 -19.20067 -18.98355 -18.40227 -18.34460 -17.66077 -17.47704 -17.00356 -16.68803 -16.56401 -16.26287 -15.88369 -15.73136 -15.28630 -15.01105 -14.74244 -14.59158 -14.15250 -14.00682 -13.67177 -13.55436 -13.27026 -13.17810 -13.00494 -12.94313 -12.81441 -12.54667 -12.45838 -12.41682 -12.31413 -12.23264 -12.02083 -11.77385 -11.62576 -11.45079 -11.28580 -11.09280 -10.56179 -9.81419 -9.01728 -8.88580 -8.11996 -6.32727 0.33771 0.44934 1.36637 1.38925 1.39375 1.46098 1.74243 2.37514 2.43022 2.71171 3.13032 3.47935 3.51305 3.90684 3.91657 3.95943 4.02555 4.16078 4.21275 4.32411 4.36272 4.38297 4.41859 4.47681 4.55479 4.63903 4.71866 4.73763 4.88764 4.95578 4.98209 5.08635 5.16885 5.22378 5.32987 5.36902 5.38233 5.55022 5.60173 5.78822 5.81606 6.00045 6.21411 6.42480 6.50472 6.88127 6.99206 7.11160 7.38289 8.90767 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.004781 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.487663 B = 5855.576415 C = 8134.327470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.465 3.535 5 O -0.529 6.529 6 C 0.068 3.932 7 N -0.521 5.521 8 C 0.208 3.792 9 C -0.556 4.556 10 H 0.070 0.930 11 C 0.011 3.989 12 N -0.927 5.927 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.288 1.288 16 H -0.265 1.265 17 C 0.108 3.892 18 C -0.065 4.065 19 C -0.141 4.141 20 C 0.100 3.900 21 O -0.345 6.345 22 C 0.019 3.981 23 C -0.190 4.190 24 C -0.115 4.115 25 C 0.086 3.914 26 O -0.492 6.492 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.139 0.861 34 H -0.001 1.001 35 H 0.001 0.999 36 H 0.262 0.738 37 H 0.104 0.896 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 5.315 -14.675 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.281 6.281 4 C 0.308 3.692 5 O -0.417 6.417 6 C -0.060 4.060 7 N -0.245 5.245 8 C 0.081 3.919 9 C -0.595 4.595 10 H 0.088 0.912 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.780 3.220 14 H -0.191 1.191 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.019 4.019 18 C -0.066 4.066 19 C -0.160 4.160 20 C 0.055 3.945 21 O -0.259 6.259 22 C -0.075 4.075 23 C -0.209 4.209 24 C -0.133 4.133 25 C 0.041 3.959 26 O -0.303 6.303 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.157 0.843 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.132 0.868 43 H 0.177 0.823 44 H 0.175 0.825 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.296 4.101 -14.427 15.055 hybrid contribution 0.198 0.754 1.640 1.816 sum -1.097 4.855 -12.788 13.722 Atomic orbital electron populations 1.21793 0.89616 1.04375 1.03851 1.23226 0.97502 0.79710 1.01775 1.86466 1.23925 1.33338 1.84388 1.24123 0.80342 0.93360 0.71356 1.90625 1.61101 1.44323 1.45609 1.21586 0.89783 0.89557 1.05101 1.61974 1.02397 1.26646 1.33494 1.19355 0.93738 0.94255 0.84558 1.21963 1.29557 1.12320 0.95668 0.91199 1.25849 0.94683 0.96893 1.01395 1.70120 1.33091 1.30988 1.22434 0.85653 0.78728 0.79454 0.78177 1.19066 1.21371 1.18936 1.20807 0.91694 0.90028 0.99345 1.19949 0.94993 0.97437 0.94230 1.20301 0.90365 1.05402 0.99981 1.19097 0.87151 0.97234 0.90987 1.86093 1.14915 1.82005 1.42891 1.23340 0.80855 1.02027 1.01325 1.21307 1.01127 1.05316 0.93106 1.21463 0.90802 0.99666 1.01368 1.18184 0.87210 1.00046 0.90464 1.84941 1.46816 1.43767 1.54781 0.91521 0.90529 0.88131 0.91501 0.93031 0.89924 0.84349 0.98327 0.98100 0.92922 0.87826 0.93824 0.87691 0.92127 0.90702 0.86757 0.82304 0.82496 0.74332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.29 71.98 0.74 -1.91 16 2 C 0.05 1.49 6.19 71.98 0.45 1.93 16 3 O -0.36 -12.59 10.22 -51.44 -0.53 -13.12 16 4 C 0.46 19.35 7.76 71.23 0.55 19.91 16 5 O -0.53 -26.55 14.42 21.97 0.32 -26.23 16 6 C 0.07 2.62 5.40 85.55 0.46 3.08 16 7 N -0.52 -23.24 4.29 -909.96 -3.90 -27.14 16 8 C 0.21 11.65 4.71 85.55 0.40 12.05 16 9 C -0.56 -30.98 7.20 25.60 0.18 -30.79 16 10 H 0.07 3.62 6.05 -2.91 -0.02 3.60 16 11 C 0.01 0.65 5.46 84.66 0.46 1.11 16 12 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 13 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 17 C 0.11 4.09 4.60 85.56 0.39 4.48 16 18 C -0.06 -2.45 4.82 -19.78 -0.10 -2.55 16 19 C -0.14 -5.75 8.99 22.36 0.20 -5.55 16 20 C 0.10 3.54 6.69 22.49 0.15 3.69 16 21 O -0.34 -11.61 10.50 -93.41 -0.98 -12.59 16 22 C 0.02 0.39 9.81 113.37 1.11 1.50 16 23 C -0.19 -5.30 9.03 22.35 0.20 -5.10 16 24 C -0.11 -3.15 9.98 22.35 0.22 -2.93 16 25 C 0.09 2.78 6.68 22.49 0.15 2.93 16 26 O -0.49 -13.92 12.79 -93.31 -1.19 -15.11 16 27 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 31 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.08 3.29 6.13 -2.39 -0.01 3.28 16 33 H 0.14 3.95 7.69 -2.39 -0.02 3.94 16 34 H 0.00 -0.09 6.31 -2.39 -0.02 -0.10 16 35 H 0.00 0.05 7.01 -2.39 -0.02 0.03 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.10 3.02 7.47 -2.39 -0.02 3.01 16 38 H 0.04 1.80 6.29 -2.39 -0.02 1.79 16 39 H 0.10 4.85 8.01 -2.91 -0.02 4.83 16 40 H 0.06 1.16 7.66 -2.39 -0.02 1.15 16 41 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.16 3.22 6.29 -2.91 -0.02 3.20 16 44 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 45 H 0.40 6.44 9.06 -74.06 -0.67 5.77 16 Total: -1.00 -81.49 374.81 1.96 -79.53 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.35 Total: 24.07 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.59 Total: 1.85 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.62 Total: -84.96 kcal Atomic # 8 Polarization: -64.66 SS G_CDS: -2.38 Total: -67.05 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -81.49 1.96 -79.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203680747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.539 kcal (2) G-P(sol) polarization free energy of solvation -81.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds