Wall clock time and date at job start Tue Mar 31 2020 13:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47061 * 2 1 4 4 C 1.34226 * 117.00110 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99959 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00307 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.46969 * 174.23316 * 6 4 3 8 8 C 1.46892 * 111.00151 * 287.88827 * 7 6 4 9 9 C 1.50708 * 109.47047 * 295.56041 * 8 7 6 10 10 H 1.08001 * 119.99510 * 5.25052 * 9 8 7 11 11 C 1.37874 * 119.99772 * 185.24444 * 9 8 7 12 12 N 1.31518 * 120.00420 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99642 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47098 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46714 * 120.00526 * 13 11 9 16 16 H 1.48498 * 109.47321 * 240.00213 * 13 11 9 17 17 C 1.46900 * 110.99614 * 163.93068 * 7 6 4 18 18 C 1.50698 * 109.47249 * 190.00345 * 17 7 6 19 19 C 1.38248 * 119.93135 * 90.00078 * 18 17 7 20 20 C 1.38239 * 120.14826 * 180.02562 * 19 18 17 21 21 C 1.38564 * 120.00316 * 359.97438 * 20 19 18 22 22 O 1.35987 * 120.07712 * 179.97438 * 21 20 19 23 23 C 1.42904 * 116.99879 * 0.02562 * 22 21 20 24 24 C 1.39158 * 119.85133 * 359.97438 * 21 20 19 25 25 O 1.35990 * 120.07583 * 179.72295 * 24 21 20 26 26 C 1.38247 * 119.92230 * 269.95935 * 18 17 7 27 27 H 1.08997 * 109.47460 * 299.99416 * 1 2 3 28 28 H 1.09001 * 109.47226 * 60.00290 * 1 2 3 29 29 H 1.09004 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46862 * 240.00232 * 2 1 3 31 31 H 1.08994 * 109.47148 * 120.00583 * 2 1 3 32 32 H 1.08995 * 109.46746 * 54.23585 * 6 4 3 33 33 H 1.08999 * 109.46561 * 294.23288 * 6 4 3 34 34 H 1.08997 * 109.47655 * 55.56206 * 8 7 6 35 35 H 1.09005 * 109.47004 * 175.56438 * 8 7 6 36 36 H 0.96990 * 120.00144 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.46962 * 70.00121 * 17 7 6 38 38 H 1.09005 * 109.47342 * 310.00192 * 17 7 6 39 39 H 1.08004 * 119.92007 * 359.97438 * 19 18 17 40 40 H 1.08007 * 119.99790 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47149 * 59.99791 * 23 22 21 42 42 H 1.09006 * 109.47214 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46881 * 299.99832 * 23 22 21 44 44 H 0.96698 * 114.00031 * 89.99440 * 25 24 21 45 45 H 1.07997 * 120.00381 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3812 2.8631 0.1408 8 6 5.7602 2.4658 1.5033 9 6 5.3268 3.5319 2.4763 10 1 4.7465 4.3747 2.1307 11 6 5.6710 3.4313 3.8076 12 7 6.3780 2.4052 4.2283 13 14 5.1344 4.7532 5.0135 14 1 4.3559 5.7930 4.2940 15 1 4.2876 4.1443 6.0707 16 1 6.3326 5.3725 5.6347 17 6 6.0110 4.1372 -0.2305 18 6 7.5045 3.9541 -0.3130 19 6 8.0888 3.5818 -1.5093 20 6 9.4584 3.4121 -1.5898 21 6 10.2489 3.6157 -0.4701 22 8 11.5962 3.4487 -0.5476 23 6 12.1303 3.0627 -1.8156 24 6 9.6609 3.9916 0.7338 25 8 10.4317 4.1872 1.8369 26 6 8.2874 4.1598 0.8078 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5042 3.5024 0.8350 33 1 3.6701 3.4346 -0.9359 34 1 5.2734 1.5238 1.7558 35 1 6.8418 2.3420 1.5580 36 1 6.6205 2.3346 5.1648 37 1 5.7782 4.8905 0.5221 38 1 5.6307 4.4618 -1.1992 39 1 7.4738 3.4223 -2.3826 40 1 9.9123 3.1207 -2.5256 41 1 11.8860 3.8215 -2.5589 42 1 13.2132 2.9639 -1.7389 43 1 11.6990 2.1078 -2.1160 44 1 10.7513 5.0943 1.9376 45 1 7.8285 4.4509 1.7410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203871104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:59 Heat of formation + Delta-G solvation = -130.135579 kcal Electronic energy + Delta-G solvation = -27938.328952 eV Core-core repulsion = 23922.165505 eV Total energy + Delta-G solvation = -4016.163447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09625 -39.84126 -37.87026 -37.01491 -36.12542 -35.24913 -32.50086 -31.60893 -30.52586 -29.60015 -27.87539 -27.61533 -26.14572 -24.22162 -23.08488 -22.20152 -21.72211 -20.57881 -19.64795 -18.10052 -17.35798 -17.03865 -16.54482 -16.23840 -16.14774 -15.63479 -15.43684 -14.86435 -14.55992 -14.55234 -14.12617 -13.95621 -13.69473 -13.62891 -13.37516 -12.94547 -12.66723 -12.36979 -12.03801 -11.88073 -11.81696 -11.57229 -11.40127 -11.30929 -11.11921 -11.00377 -10.87677 -10.76522 -10.58131 -10.43466 -10.18059 -10.15405 -9.89916 -9.70274 -9.57970 -8.46014 -8.30062 -7.68288 -7.25608 -6.02492 -4.13736 1.69403 1.77742 2.90182 3.09341 3.25101 3.34101 3.34972 3.45742 4.05220 4.38095 4.58697 5.02510 5.05462 5.06412 5.12845 5.18071 5.22252 5.26896 5.30339 5.42494 5.43046 5.48449 5.56443 5.72667 5.82550 5.85539 5.88019 5.91974 6.03364 6.11414 6.17604 6.30555 6.52211 6.63410 6.66866 6.91815 7.10183 7.15965 7.26739 7.51919 7.55810 7.89415 7.94299 8.14631 8.18312 8.24006 8.48401 8.96765 9.52682 11.02154 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.004295 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.087352 B = 6517.047882 C = 8565.642835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.524 5.524 8 C 0.181 3.819 9 C -0.560 4.560 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.878 5.878 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.103 3.897 18 C -0.080 4.080 19 C -0.074 4.074 20 C -0.206 4.206 21 C 0.091 3.909 22 O -0.313 6.313 23 C 0.028 3.972 24 C 0.068 3.932 25 O -0.483 6.483 26 C -0.072 4.072 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.377 0.623 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 3.216 -12.785 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.306 3.694 5 O -0.372 6.372 6 C -0.061 4.061 7 N -0.249 5.249 8 C 0.056 3.944 9 C -0.599 4.599 10 H 0.076 0.924 11 C -0.134 4.134 12 N -0.515 5.515 13 Si 0.711 3.289 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.024 4.024 18 C -0.081 4.081 19 C -0.093 4.093 20 C -0.224 4.224 21 C 0.046 3.954 22 O -0.227 6.227 23 C -0.067 4.067 24 C 0.023 3.977 25 O -0.291 6.291 26 C -0.091 4.091 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.231 0.769 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.370 1.840 -12.700 12.838 hybrid contribution -0.424 1.343 1.124 1.802 sum -0.055 3.183 -11.576 12.006 Atomic orbital electron populations 1.21780 0.93196 1.02470 1.03269 1.22873 0.94809 0.81176 1.02330 1.86477 1.25637 1.31552 1.84999 1.23831 0.79737 0.93327 0.72461 1.90640 1.60001 1.42922 1.43592 1.21425 0.91638 0.89729 1.03357 1.62282 1.03588 1.28133 1.30872 1.19932 0.98215 0.95842 0.80390 1.21704 1.35647 1.08657 0.93850 0.92422 1.24926 0.94767 0.95406 0.98251 1.69967 1.36782 1.28921 1.15874 0.86687 0.78541 0.82089 0.81607 1.19780 1.21007 1.20842 1.20835 0.89700 0.92111 0.99743 1.19515 0.95497 1.00547 0.92541 1.20782 0.93362 0.97254 0.97856 1.20970 0.94792 1.09223 0.97462 1.19434 0.82452 0.99641 0.93915 1.86118 1.18992 1.84112 1.33435 1.22989 0.99405 0.99590 0.84745 1.17776 0.89489 1.06158 0.84271 1.84965 1.68727 1.33400 1.41973 1.21538 0.91156 0.96725 0.99647 0.91540 0.91780 0.90702 0.91736 0.91423 0.89473 0.88738 0.94798 0.93575 0.92733 0.92205 0.91839 0.85945 0.85792 0.93037 0.88725 0.92844 0.76906 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.28 10.22 -39.25 -0.40 -6.68 16 4 C 0.47 9.15 7.54 36.01 0.27 9.43 16 5 O -0.49 -11.18 14.90 -18.76 -0.28 -11.46 16 6 C 0.07 1.25 5.42 -4.97 -0.03 1.22 16 7 N -0.52 -10.95 4.29 -238.96 -1.03 -11.98 16 8 C 0.18 4.65 4.39 -4.98 -0.02 4.63 16 9 C -0.56 -14.52 6.73 -34.44 -0.23 -14.75 16 10 H 0.06 1.44 5.97 -52.49 -0.31 1.12 16 11 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 12 N -0.88 -25.78 13.29 55.43 0.74 -25.04 16 13 Si 0.88 20.77 29.54 -169.99 -5.02 15.75 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.10 1.86 4.89 -4.98 -0.02 1.83 16 18 C -0.08 -1.46 4.88 -104.62 -0.51 -1.97 16 19 C -0.07 -1.18 9.69 -39.58 -0.38 -1.56 16 20 C -0.21 -3.14 9.04 -39.46 -0.36 -3.49 16 21 C 0.09 1.56 6.70 -39.12 -0.26 1.30 16 22 O -0.31 -4.91 10.28 -34.20 -0.35 -5.27 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C 0.07 1.29 6.72 -39.12 -0.26 1.03 16 25 O -0.48 -8.93 13.29 -34.21 -0.45 -9.38 16 26 C -0.07 -1.43 7.91 -39.46 -0.31 -1.74 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.09 1.68 6.40 -51.93 -0.33 1.34 16 33 H 0.09 1.38 7.81 -51.93 -0.41 0.97 16 34 H 0.03 0.99 6.58 -51.93 -0.34 0.65 16 35 H 0.05 1.31 6.20 -51.93 -0.32 0.99 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.06 1.14 6.30 -51.93 -0.33 0.81 16 38 H 0.06 0.93 7.80 -51.93 -0.41 0.53 16 39 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 40 H 0.12 1.51 6.30 -52.48 -0.33 1.18 16 41 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 44 H 0.38 4.90 9.06 45.56 0.41 5.32 16 45 H 0.15 3.33 7.43 -52.49 -0.39 2.94 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -34.06 373.18 -7.43 -41.50 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.64 Total: 7.96 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.61 Total: -1.02 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.29 Total: -37.02 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.49 Total: -32.79 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.06 -7.43 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203871104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.640 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds