Wall clock time and date at job start Tue Mar 31 2020 13:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47061 * 2 1 4 4 C 1.34226 * 117.00110 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99959 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00307 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.46969 * 174.23316 * 6 4 3 8 8 C 1.46892 * 111.00151 * 287.88827 * 7 6 4 9 9 C 1.50708 * 109.47047 * 295.56041 * 8 7 6 10 10 H 1.08001 * 119.99510 * 5.25052 * 9 8 7 11 11 C 1.37874 * 119.99772 * 185.24444 * 9 8 7 12 12 N 1.31518 * 120.00420 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99642 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47098 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46714 * 120.00526 * 13 11 9 16 16 H 1.48498 * 109.47321 * 240.00213 * 13 11 9 17 17 C 1.46900 * 110.99614 * 163.93068 * 7 6 4 18 18 C 1.50698 * 109.47249 * 190.00345 * 17 7 6 19 19 C 1.38248 * 119.93135 * 90.00078 * 18 17 7 20 20 C 1.38239 * 120.14826 * 180.02562 * 19 18 17 21 21 C 1.38564 * 120.00316 * 359.97438 * 20 19 18 22 22 O 1.35987 * 120.07712 * 179.97438 * 21 20 19 23 23 C 1.42904 * 116.99879 * 0.02562 * 22 21 20 24 24 C 1.39158 * 119.85133 * 359.97438 * 21 20 19 25 25 O 1.35990 * 120.07583 * 179.72295 * 24 21 20 26 26 C 1.38247 * 119.92230 * 269.95935 * 18 17 7 27 27 H 1.08997 * 109.47460 * 299.99416 * 1 2 3 28 28 H 1.09001 * 109.47226 * 60.00290 * 1 2 3 29 29 H 1.09004 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46862 * 240.00232 * 2 1 3 31 31 H 1.08994 * 109.47148 * 120.00583 * 2 1 3 32 32 H 1.08995 * 109.46746 * 54.23585 * 6 4 3 33 33 H 1.08999 * 109.46561 * 294.23288 * 6 4 3 34 34 H 1.08997 * 109.47655 * 55.56206 * 8 7 6 35 35 H 1.09005 * 109.47004 * 175.56438 * 8 7 6 36 36 H 0.96990 * 120.00144 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.46962 * 70.00121 * 17 7 6 38 38 H 1.09005 * 109.47342 * 310.00192 * 17 7 6 39 39 H 1.08004 * 119.92007 * 359.97438 * 19 18 17 40 40 H 1.08007 * 119.99790 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47149 * 59.99791 * 23 22 21 42 42 H 1.09006 * 109.47214 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46881 * 299.99832 * 23 22 21 44 44 H 0.96698 * 114.00031 * 89.99440 * 25 24 21 45 45 H 1.07997 * 120.00381 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3812 2.8631 0.1408 8 6 5.7602 2.4658 1.5033 9 6 5.3268 3.5319 2.4763 10 1 4.7465 4.3747 2.1307 11 6 5.6710 3.4313 3.8076 12 7 6.3780 2.4052 4.2283 13 14 5.1344 4.7532 5.0135 14 1 4.3559 5.7930 4.2940 15 1 4.2876 4.1443 6.0707 16 1 6.3326 5.3725 5.6347 17 6 6.0110 4.1372 -0.2305 18 6 7.5045 3.9541 -0.3130 19 6 8.0888 3.5818 -1.5093 20 6 9.4584 3.4121 -1.5898 21 6 10.2489 3.6157 -0.4701 22 8 11.5962 3.4487 -0.5476 23 6 12.1303 3.0627 -1.8156 24 6 9.6609 3.9916 0.7338 25 8 10.4317 4.1872 1.8369 26 6 8.2874 4.1598 0.8078 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5042 3.5024 0.8350 33 1 3.6701 3.4346 -0.9359 34 1 5.2734 1.5238 1.7558 35 1 6.8418 2.3420 1.5580 36 1 6.6205 2.3346 5.1648 37 1 5.7782 4.8905 0.5221 38 1 5.6307 4.4618 -1.1992 39 1 7.4738 3.4223 -2.3826 40 1 9.9123 3.1207 -2.5256 41 1 11.8860 3.8215 -2.5589 42 1 13.2132 2.9639 -1.7389 43 1 11.6990 2.1078 -2.1160 44 1 10.7513 5.0943 1.9376 45 1 7.8285 4.4509 1.7410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203871104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:58 Heat of formation + Delta-G solvation = -154.682074 kcal Electronic energy + Delta-G solvation = -27939.393368 eV Core-core repulsion = 23922.165505 eV Total energy + Delta-G solvation = -4017.227863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47435 -41.23926 -39.22909 -38.43331 -37.55150 -36.79029 -34.54669 -32.70782 -31.84117 -30.93870 -29.64965 -28.79952 -27.55427 -25.91820 -24.38062 -23.52526 -23.15306 -21.96315 -21.27205 -19.44728 -18.85987 -18.41098 -18.34288 -17.66958 -17.44589 -17.06638 -16.70476 -16.56132 -16.11310 -15.89250 -15.65939 -15.28853 -15.04326 -14.84618 -14.81253 -14.44167 -14.09082 -13.58035 -13.27764 -13.14405 -13.06300 -13.02171 -12.93299 -12.68355 -12.58441 -12.54365 -12.44637 -12.31410 -12.03157 -11.97670 -11.81056 -11.61493 -11.45286 -11.39550 -11.22226 -10.58008 -9.68392 -9.10809 -8.87396 -8.10680 -6.30818 0.36755 0.43689 1.36857 1.37077 1.38597 1.49295 1.75352 2.37091 2.38512 2.72711 3.15457 3.29301 3.55146 3.94035 3.94361 4.02308 4.06013 4.15377 4.20159 4.36596 4.39089 4.42969 4.45911 4.51942 4.59642 4.67445 4.74264 4.76585 4.88047 4.95012 4.95280 5.11502 5.16986 5.22060 5.32572 5.38551 5.41692 5.55104 5.75814 5.81783 5.86759 6.01009 6.21287 6.37535 6.42637 6.90027 6.93726 6.97755 7.40577 8.92216 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.004295 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.087352 B = 6517.047882 C = 8565.642835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.529 6.529 6 C 0.066 3.934 7 N -0.530 5.530 8 C 0.206 3.794 9 C -0.549 4.549 10 H 0.071 0.929 11 C 0.014 3.986 12 N -0.925 5.925 13 Si 0.951 3.049 14 H -0.254 1.254 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.105 3.895 18 C -0.097 4.097 19 C -0.068 4.068 20 C -0.195 4.195 21 C 0.089 3.911 22 O -0.333 6.333 23 C 0.017 3.983 24 C 0.044 3.956 25 O -0.505 6.505 26 C -0.094 4.094 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.145 0.855 34 H -0.012 1.012 35 H 0.010 0.990 36 H 0.261 0.739 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.396 0.604 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 4.473 -15.628 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.062 4.062 7 N -0.254 5.254 8 C 0.080 3.920 9 C -0.588 4.588 10 H 0.089 0.911 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.776 3.224 14 H -0.178 1.178 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.021 4.021 18 C -0.097 4.097 19 C -0.087 4.087 20 C -0.214 4.214 21 C 0.043 3.957 22 O -0.247 6.247 23 C -0.078 4.078 24 C -0.001 4.001 25 O -0.316 6.316 26 C -0.113 4.113 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.006 0.994 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.127 0.873 39 H 0.172 0.828 40 H 0.180 0.820 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.078 0.922 44 H 0.252 0.748 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.681 3.136 -15.573 15.900 hybrid contribution -0.046 0.898 1.901 2.103 sum -0.727 4.034 -13.672 14.273 Atomic orbital electron populations 1.21796 0.89791 1.04356 1.03807 1.23222 0.97424 0.79687 1.01832 1.86473 1.24083 1.33346 1.84288 1.24161 0.80332 0.93426 0.71332 1.90626 1.61121 1.44251 1.45714 1.21596 0.89745 0.89321 1.05561 1.62109 1.05559 1.30217 1.27514 1.19361 0.95380 0.93939 0.83366 1.21959 1.34414 1.08550 0.93844 0.91094 1.25794 0.94906 0.97445 1.00444 1.70131 1.38875 1.31428 1.16058 0.85615 0.78030 0.79626 0.79112 1.17766 1.21140 1.20977 1.20952 0.89654 0.90069 1.01437 1.19651 0.95604 1.01482 0.93007 1.21117 0.94087 0.95706 0.97753 1.21374 0.94439 1.07367 0.98199 1.19476 0.83565 0.99048 0.93624 1.86095 1.18073 1.84056 1.36473 1.23373 1.00676 1.00475 0.83230 1.17977 0.89434 1.07440 0.85276 1.84887 1.68832 1.35276 1.42560 1.21318 0.92030 0.98954 0.99019 0.91719 0.90452 0.88147 0.91154 0.93180 0.90143 0.83743 0.99360 0.97145 0.93055 0.93645 0.87296 0.82769 0.82020 0.90876 0.86404 0.92190 0.74787 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.29 71.98 0.74 -1.85 16 2 C 0.05 1.44 6.19 71.98 0.45 1.88 16 3 O -0.36 -12.12 10.22 -51.38 -0.53 -12.65 16 4 C 0.46 18.20 7.54 71.24 0.54 18.74 16 5 O -0.53 -24.94 14.90 21.94 0.33 -24.62 16 6 C 0.07 2.35 5.42 85.56 0.46 2.82 16 7 N -0.53 -22.07 4.29 -909.94 -3.91 -25.97 16 8 C 0.21 11.06 4.39 85.56 0.38 11.43 16 9 C -0.55 -29.30 6.73 25.60 0.17 -29.13 16 10 H 0.07 3.53 5.97 -2.91 -0.02 3.51 16 11 C 0.01 0.77 5.46 84.65 0.46 1.24 16 12 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 13 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 14 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 C 0.11 3.65 4.89 85.56 0.42 4.07 16 18 C -0.10 -3.50 4.88 -19.86 -0.10 -3.60 16 19 C -0.07 -2.02 9.69 22.27 0.22 -1.80 16 20 C -0.20 -5.45 9.04 22.35 0.20 -5.25 16 21 C 0.09 2.98 6.70 22.57 0.15 3.13 16 22 O -0.33 -10.05 10.28 -79.53 -0.82 -10.86 16 23 C 0.02 0.30 9.81 113.37 1.11 1.42 16 24 C 0.04 1.72 6.72 22.57 0.15 1.87 16 25 O -0.50 -19.74 13.29 -79.57 -1.06 -20.80 16 26 C -0.09 -3.92 7.91 22.35 0.18 -3.74 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.08 3.00 6.40 -2.39 -0.02 2.99 16 33 H 0.15 3.65 7.81 -2.39 -0.02 3.63 16 34 H -0.01 -0.73 6.58 -2.39 -0.02 -0.75 16 35 H 0.01 0.63 6.20 -2.38 -0.01 0.62 16 36 H 0.26 15.35 8.31 -92.72 -0.77 14.58 16 37 H 0.05 1.70 6.30 -2.39 -0.02 1.69 16 38 H 0.11 2.78 7.80 -2.38 -0.02 2.76 16 39 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 40 H 0.16 3.22 6.30 -2.91 -0.02 3.20 16 41 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 42 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 44 H 0.40 11.02 9.06 -74.06 -0.67 10.35 16 45 H 0.11 5.45 7.43 -2.91 -0.02 5.43 16 Total: -1.00 -79.61 373.18 2.21 -77.40 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.35 Total: 27.48 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.53 Total: 1.23 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -3.62 Total: -82.89 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -2.07 Total: -68.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -79.61 2.21 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203871104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.279 kcal (2) G-P(sol) polarization free energy of solvation -79.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds