Wall clock time and date at job start Tue Mar 31 2020 13:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45197 * 109.47321 * 2 1 4 4 C 1.34228 * 117.00151 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99977 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00038 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47215 * 174.20724 * 6 4 3 8 8 C 1.46907 * 111.00206 * 287.91508 * 7 6 4 9 9 C 1.50701 * 109.46852 * 295.77586 * 8 7 6 10 10 H 1.08004 * 119.99986 * 5.07490 * 9 8 7 11 11 C 1.37878 * 120.00009 * 185.06845 * 9 8 7 12 12 N 1.31518 * 119.99642 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47287 * 60.00438 * 13 11 9 15 15 H 1.48501 * 109.46951 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47319 * 300.00120 * 13 11 9 17 17 C 1.46908 * 111.00196 * 163.96315 * 7 6 4 18 18 C 1.50698 * 109.47175 * 190.00241 * 17 7 6 19 19 C 1.38248 * 119.93074 * 89.99495 * 18 17 7 20 20 C 1.38239 * 120.15031 * 180.02562 * 19 18 17 21 21 C 1.38563 * 119.99773 * 359.97438 * 20 19 18 22 22 O 1.35998 * 120.07595 * 179.97438 * 21 20 19 23 23 C 1.39151 * 119.85422 * 0.02562 * 21 20 19 24 24 O 1.35998 * 120.07475 * 180.02562 * 23 21 20 25 25 C 1.42905 * 117.00259 * 180.02562 * 24 23 21 26 26 C 1.38250 * 119.92324 * 270.25081 * 18 17 7 27 27 H 1.08993 * 109.47588 * 59.99647 * 1 2 3 28 28 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47078 * 299.99753 * 1 2 3 30 30 H 1.09007 * 109.46860 * 239.99740 * 2 1 3 31 31 H 1.09001 * 109.47782 * 120.00121 * 2 1 3 32 32 H 1.08997 * 109.47342 * 54.20575 * 6 4 3 33 33 H 1.09003 * 109.47211 * 294.20779 * 6 4 3 34 34 H 1.08991 * 109.46970 * 55.77365 * 8 7 6 35 35 H 1.08998 * 109.47301 * 175.77860 * 8 7 6 36 36 H 0.97004 * 119.99440 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47144 * 69.99726 * 17 7 6 38 38 H 1.09006 * 109.46662 * 309.99761 * 17 7 6 39 39 H 1.08000 * 119.92694 * 0.02562 * 19 18 17 40 40 H 1.07995 * 120.00264 * 179.97438 * 20 19 18 41 41 H 0.96699 * 113.99612 * 270.02724 * 22 21 20 42 42 H 1.08995 * 109.47076 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47229 * 59.99325 * 25 24 23 44 44 H 1.09003 * 109.46559 * 299.99348 * 25 24 23 45 45 H 1.07990 * 120.00041 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 7 5.3812 2.8632 0.1381 8 6 5.7607 2.4663 1.5007 9 6 5.3227 3.5302 2.4741 10 1 4.7421 4.3726 2.1281 11 6 5.6633 3.4281 3.8062 12 7 6.3707 2.4025 4.2273 13 14 5.1199 4.7464 5.0128 14 1 3.6369 4.8240 5.0266 15 1 5.6108 4.4058 6.3723 16 1 5.6803 6.0578 4.5988 17 6 6.0109 4.1373 -0.2337 18 6 7.5044 3.9542 -0.3164 19 6 8.0885 3.5815 -1.5128 20 6 9.4580 3.4118 -1.5936 21 6 10.2487 3.6158 -0.4742 22 8 11.5961 3.4487 -0.5518 23 6 9.6609 3.9910 0.7300 24 8 10.4327 4.1929 1.8314 25 6 9.7609 4.5759 3.0331 26 6 8.2870 4.1543 0.8056 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.5045 3.5031 0.8324 33 1 3.6699 3.4339 -0.9385 34 1 5.2770 1.5225 1.7522 35 1 6.8426 2.3463 1.5562 36 1 6.6105 2.3309 5.1645 37 1 5.7783 4.8908 0.5188 38 1 5.6304 4.4616 -1.2023 39 1 7.4734 3.4226 -2.3861 40 1 9.9117 3.1201 -2.5293 41 1 11.8930 2.5499 -0.3542 42 1 10.4908 4.7046 3.8322 43 1 9.0475 3.8009 3.3134 44 1 9.2319 5.5149 2.8701 45 1 7.8278 4.4409 1.7400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204119812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:41 Heat of formation + Delta-G solvation = -132.747780 kcal Electronic energy + Delta-G solvation = -28292.401390 eV Core-core repulsion = 24276.124669 eV Total energy + Delta-G solvation = -4016.276720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06823 -39.83494 -37.61235 -37.23181 -36.16696 -35.25429 -32.61245 -31.63542 -30.44609 -29.68128 -27.91545 -27.31033 -26.12153 -24.30802 -23.12765 -21.91557 -21.83661 -20.66901 -19.70838 -18.18858 -17.40215 -16.79656 -16.58024 -16.27090 -15.92352 -15.52761 -15.48358 -14.91514 -14.74646 -14.57596 -14.16632 -13.93558 -13.68996 -13.46471 -13.29817 -12.95012 -12.67250 -12.43670 -12.05374 -11.80577 -11.69072 -11.61296 -11.41389 -11.30331 -11.11436 -11.06070 -10.93265 -10.66378 -10.53251 -10.50123 -10.23021 -10.19904 -9.99596 -9.79846 -9.66058 -8.55018 -8.25181 -7.63706 -7.34890 -6.14409 -4.25398 1.63983 1.87486 2.86040 3.05269 3.16149 3.23325 3.25398 3.70183 4.02434 4.26958 4.62564 4.99174 5.03247 5.08293 5.14439 5.25370 5.27407 5.37330 5.39997 5.58611 5.66122 5.68126 5.74065 5.77008 5.81863 5.85229 5.97204 6.00949 6.06555 6.11804 6.11928 6.36106 6.38234 6.66369 6.73349 6.87901 7.08002 7.11388 7.23576 7.44695 7.61835 7.81450 7.83211 8.06019 8.09906 8.13542 8.43785 8.85088 9.40534 10.89478 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.004648 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.382323 B = 6023.209093 C = 7999.010093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.466 3.534 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.523 5.523 8 C 0.182 3.818 9 C -0.558 4.558 10 H 0.057 0.943 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.879 3.121 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.098 3.902 18 C -0.029 4.029 19 C -0.127 4.127 20 C -0.118 4.118 21 C 0.059 3.941 22 O -0.492 6.492 23 C 0.098 3.902 24 O -0.315 6.315 25 C 0.023 3.977 26 C -0.161 4.161 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.380 0.620 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 1.101 -8.435 8.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.372 6.372 6 C -0.062 4.062 7 N -0.247 5.247 8 C 0.057 3.943 9 C -0.597 4.597 10 H 0.075 0.925 11 C -0.133 4.133 12 N -0.519 5.519 13 Si 0.707 3.293 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.029 4.029 18 C -0.030 4.030 19 C -0.146 4.146 20 C -0.136 4.136 21 C 0.014 3.986 22 O -0.301 6.301 23 C 0.052 3.948 24 O -0.228 6.228 25 C -0.072 4.072 26 C -0.180 4.180 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.234 0.766 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.626 0.899 -8.705 8.901 hybrid contribution -0.795 0.550 1.800 2.043 sum -2.421 1.449 -6.905 7.460 Atomic orbital electron populations 1.21780 0.93175 1.02493 1.03284 1.22878 0.94827 0.81125 1.02336 1.86478 1.25595 1.31600 1.84975 1.23798 0.79767 0.93280 0.72469 1.90636 1.60009 1.42906 1.43609 1.21425 0.91484 0.89815 1.03429 1.62262 1.03709 1.28010 1.30761 1.19929 0.98126 0.95850 0.80430 1.21689 1.35423 1.08713 0.93837 0.92491 1.24905 0.94867 0.95408 0.98119 1.69963 1.37124 1.28854 1.15956 0.86857 0.79453 0.82292 0.80711 1.20129 1.21096 1.20122 1.20912 0.89863 0.92152 0.99945 1.19532 0.95249 0.95932 0.92284 1.20760 0.93648 1.02181 0.98023 1.21047 0.93580 1.01538 0.97463 1.17689 0.83144 1.07075 0.90723 1.84850 1.18274 1.34779 1.92158 1.19444 0.90166 0.98604 0.86567 1.86041 1.35471 1.83745 1.17545 1.23121 0.98867 1.00778 0.84446 1.21442 0.91288 1.04431 1.00837 0.91750 0.90677 0.91555 0.91698 0.91433 0.89491 0.88646 0.94668 0.93661 0.92650 0.92228 0.91575 0.85894 0.85493 0.76612 0.88982 0.90754 0.93007 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.15 0.38 -1.12 16 2 C 0.06 0.86 6.19 37.15 0.23 1.09 16 3 O -0.37 -6.15 10.22 -39.25 -0.40 -6.56 16 4 C 0.47 8.96 7.54 36.00 0.27 9.23 16 5 O -0.49 -10.91 14.90 -18.75 -0.28 -11.19 16 6 C 0.07 1.22 5.42 -4.98 -0.03 1.19 16 7 N -0.52 -10.64 4.29 -238.96 -1.03 -11.67 16 8 C 0.18 4.47 4.38 -4.97 -0.02 4.45 16 9 C -0.56 -13.86 6.73 -34.44 -0.23 -14.09 16 10 H 0.06 1.37 5.96 -52.48 -0.31 1.06 16 11 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.88 -24.10 13.29 55.43 0.74 -23.36 16 13 Si 0.88 19.79 29.54 -169.99 -5.02 14.77 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 C 0.10 1.75 4.90 -4.97 -0.02 1.73 16 18 C -0.03 -0.53 4.89 -104.61 -0.51 -1.05 16 19 C -0.13 -2.06 9.69 -39.58 -0.38 -2.44 16 20 C -0.12 -1.84 9.98 -39.46 -0.39 -2.23 16 21 C 0.06 1.02 6.72 -39.12 -0.26 0.76 16 22 O -0.49 -7.71 13.29 -34.24 -0.46 -8.17 16 23 C 0.10 1.86 6.70 -39.12 -0.26 1.60 16 24 O -0.31 -5.89 10.28 -34.24 -0.35 -6.24 16 25 C 0.02 0.38 9.81 101.05 0.99 1.38 16 26 C -0.16 -3.15 6.94 -39.46 -0.27 -3.42 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.09 1.63 6.38 -51.93 -0.33 1.30 16 33 H 0.10 1.36 7.81 -51.93 -0.41 0.96 16 34 H 0.04 0.99 6.58 -51.93 -0.34 0.65 16 35 H 0.05 1.21 6.17 -51.93 -0.32 0.89 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.06 1.12 6.32 -51.93 -0.33 0.79 16 38 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.38 4.31 9.06 45.56 0.41 4.73 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.44 7.65 -51.93 -0.40 1.04 16 44 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 45 H 0.15 3.15 5.65 -52.49 -0.30 2.85 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -31.34 373.11 -7.43 -38.77 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.64 Total: 9.25 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.61 Total: -1.22 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.29 Total: -35.03 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.49 Total: -32.16 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.34 -7.43 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204119812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.981 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds