Wall clock time and date at job start Tue Mar 31 2020 13:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45197 * 109.47321 * 2 1 4 4 C 1.34228 * 117.00151 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99977 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00038 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47215 * 174.20724 * 6 4 3 8 8 C 1.46907 * 111.00206 * 287.91508 * 7 6 4 9 9 C 1.50701 * 109.46852 * 295.77586 * 8 7 6 10 10 H 1.08004 * 119.99986 * 5.07490 * 9 8 7 11 11 C 1.37878 * 120.00009 * 185.06845 * 9 8 7 12 12 N 1.31518 * 119.99642 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47287 * 60.00438 * 13 11 9 15 15 H 1.48501 * 109.46951 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47319 * 300.00120 * 13 11 9 17 17 C 1.46908 * 111.00196 * 163.96315 * 7 6 4 18 18 C 1.50698 * 109.47175 * 190.00241 * 17 7 6 19 19 C 1.38248 * 119.93074 * 89.99495 * 18 17 7 20 20 C 1.38239 * 120.15031 * 180.02562 * 19 18 17 21 21 C 1.38563 * 119.99773 * 359.97438 * 20 19 18 22 22 O 1.35998 * 120.07595 * 179.97438 * 21 20 19 23 23 C 1.39151 * 119.85422 * 0.02562 * 21 20 19 24 24 O 1.35998 * 120.07475 * 180.02562 * 23 21 20 25 25 C 1.42905 * 117.00259 * 180.02562 * 24 23 21 26 26 C 1.38250 * 119.92324 * 270.25081 * 18 17 7 27 27 H 1.08993 * 109.47588 * 59.99647 * 1 2 3 28 28 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47078 * 299.99753 * 1 2 3 30 30 H 1.09007 * 109.46860 * 239.99740 * 2 1 3 31 31 H 1.09001 * 109.47782 * 120.00121 * 2 1 3 32 32 H 1.08997 * 109.47342 * 54.20575 * 6 4 3 33 33 H 1.09003 * 109.47211 * 294.20779 * 6 4 3 34 34 H 1.08991 * 109.46970 * 55.77365 * 8 7 6 35 35 H 1.08998 * 109.47301 * 175.77860 * 8 7 6 36 36 H 0.97004 * 119.99440 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47144 * 69.99726 * 17 7 6 38 38 H 1.09006 * 109.46662 * 309.99761 * 17 7 6 39 39 H 1.08000 * 119.92694 * 0.02562 * 19 18 17 40 40 H 1.07995 * 120.00264 * 179.97438 * 20 19 18 41 41 H 0.96699 * 113.99612 * 270.02724 * 22 21 20 42 42 H 1.08995 * 109.47076 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47229 * 59.99325 * 25 24 23 44 44 H 1.09003 * 109.46559 * 299.99348 * 25 24 23 45 45 H 1.07990 * 120.00041 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 7 5.3812 2.8632 0.1381 8 6 5.7607 2.4663 1.5007 9 6 5.3227 3.5302 2.4741 10 1 4.7421 4.3726 2.1281 11 6 5.6633 3.4281 3.8062 12 7 6.3707 2.4025 4.2273 13 14 5.1199 4.7464 5.0128 14 1 3.6369 4.8240 5.0266 15 1 5.6108 4.4058 6.3723 16 1 5.6803 6.0578 4.5988 17 6 6.0109 4.1373 -0.2337 18 6 7.5044 3.9542 -0.3164 19 6 8.0885 3.5815 -1.5128 20 6 9.4580 3.4118 -1.5936 21 6 10.2487 3.6158 -0.4742 22 8 11.5961 3.4487 -0.5518 23 6 9.6609 3.9910 0.7300 24 8 10.4327 4.1929 1.8314 25 6 9.7609 4.5759 3.0331 26 6 8.2870 4.1543 0.8056 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.5045 3.5031 0.8324 33 1 3.6699 3.4339 -0.9385 34 1 5.2770 1.5225 1.7522 35 1 6.8426 2.3463 1.5562 36 1 6.6105 2.3309 5.1645 37 1 5.7783 4.8908 0.5188 38 1 5.6304 4.4616 -1.2023 39 1 7.4734 3.4226 -2.3861 40 1 9.9117 3.1201 -2.5293 41 1 11.8930 2.5499 -0.3542 42 1 10.4908 4.7046 3.8322 43 1 9.0475 3.8009 3.3134 44 1 9.2319 5.5149 2.8701 45 1 7.8278 4.4409 1.7400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204119812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:40 Heat of formation + Delta-G solvation = -154.230081 kcal Electronic energy + Delta-G solvation = -28293.332932 eV Core-core repulsion = 24276.124669 eV Total energy + Delta-G solvation = -4017.208263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49493 -41.23687 -39.08421 -38.57912 -37.55566 -36.75436 -34.55853 -32.70909 -31.77959 -31.05711 -29.65840 -28.76048 -27.62369 -25.97019 -24.39726 -23.31515 -23.18320 -22.06328 -21.29666 -19.50645 -18.98116 -18.37353 -18.11996 -17.66271 -17.32668 -17.04327 -16.88124 -16.59146 -16.09232 -16.07670 -15.74716 -15.24911 -15.01966 -14.85070 -14.74141 -14.38843 -14.08930 -13.58353 -13.36268 -13.18352 -13.07079 -13.02337 -12.95741 -12.77497 -12.57276 -12.53162 -12.44556 -12.29371 -12.15894 -11.98592 -11.83856 -11.64513 -11.45881 -11.41585 -11.24819 -10.56829 -9.63049 -9.07496 -8.95718 -8.11807 -6.31126 0.29620 0.52310 1.36019 1.36484 1.38465 1.44641 1.74015 2.35163 2.36477 2.68731 3.13190 3.36637 3.50671 3.92795 3.95498 4.01053 4.02081 4.14772 4.22796 4.31432 4.36156 4.36636 4.38448 4.50121 4.62790 4.64719 4.72465 4.75829 4.87654 4.92298 4.94735 5.06651 5.16466 5.20888 5.36712 5.40071 5.40795 5.54371 5.75662 5.80640 5.86288 6.00449 6.20202 6.29272 6.38482 6.87986 6.91156 6.96584 7.39123 8.90239 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.004648 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.382323 B = 6023.209093 C = 7999.010093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.528 6.528 6 C 0.067 3.933 7 N -0.529 5.529 8 C 0.207 3.793 9 C -0.553 4.553 10 H 0.067 0.933 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.940 3.060 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.264 1.264 17 C 0.101 3.899 18 C -0.048 4.048 19 C -0.121 4.121 20 C -0.110 4.110 21 C 0.056 3.944 22 O -0.497 6.497 23 C 0.072 3.928 24 O -0.325 6.325 25 C 0.029 3.971 26 C -0.176 4.176 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.143 0.857 34 H -0.010 1.010 35 H 0.015 0.985 36 H 0.262 0.738 37 H 0.046 0.954 38 H 0.108 0.892 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.399 0.601 42 H 0.122 0.878 43 H 0.040 0.960 44 H 0.054 0.946 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 2.257 -10.489 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.416 6.416 6 C -0.062 4.062 7 N -0.253 5.253 8 C 0.081 3.919 9 C -0.592 4.592 10 H 0.085 0.915 11 C -0.177 4.177 12 N -0.558 5.558 13 Si 0.766 3.234 14 H -0.197 1.197 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.025 4.025 18 C -0.048 4.048 19 C -0.139 4.139 20 C -0.128 4.128 21 C 0.011 3.989 22 O -0.308 6.308 23 C 0.026 3.974 24 O -0.239 6.239 25 C -0.065 4.065 26 C -0.196 4.196 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.008 0.992 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.256 0.744 42 H 0.140 0.860 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.623 2.067 -10.776 11.282 hybrid contribution -0.487 0.119 2.366 2.419 sum -3.110 2.186 -8.410 9.229 Atomic orbital electron populations 1.21797 0.89853 1.04360 1.03780 1.23223 0.97382 0.79645 1.01875 1.86475 1.24104 1.33396 1.84286 1.24115 0.80342 0.93374 0.71375 1.90621 1.61085 1.44189 1.45667 1.21584 0.89721 0.89407 1.05501 1.62106 1.05549 1.29846 1.27793 1.19374 0.95584 0.93905 0.83075 1.21896 1.34657 1.08673 0.93952 0.91512 1.25642 0.94922 0.97183 0.99955 1.70104 1.38643 1.30901 1.16109 0.85880 0.79015 0.80212 0.78319 1.19689 1.21384 1.18876 1.21007 0.89729 0.90306 1.01493 1.19716 0.95486 0.96848 0.92794 1.21085 0.94291 1.00559 0.97977 1.21413 0.93305 1.00006 0.98082 1.17914 0.83944 1.06499 0.90548 1.84788 1.17394 1.36599 1.92065 1.19760 0.90235 0.99968 0.87416 1.86007 1.35854 1.84086 1.17920 1.23112 0.99080 0.99543 0.84806 1.21297 0.91909 1.05923 1.00433 0.90502 0.88125 0.91743 0.91140 0.93081 0.90154 0.83934 0.99216 0.96730 0.92898 0.93615 0.87402 0.82952 0.82077 0.74381 0.85985 0.94170 0.92685 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.05 1.41 6.19 71.98 0.45 1.86 16 3 O -0.37 -11.93 10.22 -51.40 -0.53 -12.45 16 4 C 0.46 17.83 7.54 71.24 0.54 18.37 16 5 O -0.53 -24.26 14.90 21.98 0.33 -23.93 16 6 C 0.07 2.31 5.42 85.56 0.46 2.77 16 7 N -0.53 -21.41 4.29 -909.93 -3.91 -25.31 16 8 C 0.21 10.60 4.38 85.56 0.38 10.97 16 9 C -0.55 -28.20 6.73 25.60 0.17 -28.02 16 10 H 0.07 3.21 5.96 -2.91 -0.02 3.20 16 11 C 0.02 1.23 5.46 84.65 0.46 1.69 16 12 N -0.92 -52.58 13.29 21.45 0.28 -52.29 16 13 Si 0.94 41.25 29.54 68.60 2.03 43.27 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 17 C 0.10 3.47 4.90 85.55 0.42 3.89 16 18 C -0.05 -1.72 4.89 -19.86 -0.10 -1.81 16 19 C -0.12 -3.61 9.69 22.27 0.22 -3.39 16 20 C -0.11 -3.15 9.98 22.35 0.22 -2.93 16 21 C 0.06 1.89 6.72 22.57 0.15 2.04 16 22 O -0.50 -14.81 13.29 -79.66 -1.06 -15.87 16 23 C 0.07 2.77 6.70 22.57 0.15 2.93 16 24 O -0.32 -12.48 10.28 -79.66 -0.82 -13.30 16 25 C 0.03 1.03 9.81 113.37 1.11 2.14 16 26 C -0.18 -7.11 6.94 22.35 0.16 -6.96 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.81 8.13 -2.38 -0.02 1.79 16 31 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.08 2.94 6.38 -2.39 -0.02 2.92 16 33 H 0.14 3.56 7.81 -2.39 -0.02 3.55 16 34 H -0.01 -0.62 6.58 -2.39 -0.02 -0.63 16 35 H 0.01 0.83 6.17 -2.39 -0.01 0.82 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.05 1.69 6.32 -2.39 -0.02 1.68 16 38 H 0.11 2.78 7.80 -2.38 -0.02 2.76 16 39 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 41 H 0.40 8.45 9.06 -74.06 -0.67 7.77 16 42 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.04 1.67 7.65 -2.39 -0.02 1.65 16 44 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 45 H 0.12 5.47 5.65 -2.92 -0.02 5.45 16 Total: -1.00 -71.58 373.11 2.20 -69.38 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.35 Total: 28.75 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.53 Total: 1.76 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -3.62 Total: -77.61 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -2.08 Total: -65.55 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -71.58 2.20 -69.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204119812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.855 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds