Wall clock time and date at job start Tue Mar 31 2020 14:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35271 * 126.70844 * 2 1 4 4 C 1.41931 * 103.95699 * 179.97438 * 3 2 1 5 5 O 1.35709 * 126.87667 * 179.97438 * 4 3 2 6 6 C 1.42906 * 117.00162 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47172 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47119 * 90.00235 * 19 17 15 21 21 H 1.48504 * 109.47026 * 209.99971 * 19 17 15 22 22 H 1.48500 * 109.47048 * 329.99810 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 N 1.30612 * 106.24401 * 0.24352 * 4 3 2 26 26 O 1.20916 * 111.49942 * 359.57261 * 25 4 3 27 27 H 1.08999 * 109.46930 * 89.99587 * 1 2 3 28 28 H 1.08998 * 109.46899 * 209.99842 * 1 2 3 29 29 H 1.09004 * 109.46990 * 329.99676 * 1 2 3 30 30 H 1.08003 * 128.02106 * 359.96402 * 3 2 1 31 31 H 1.09001 * 109.46424 * 60.00298 * 6 5 4 32 32 H 1.09001 * 109.47169 * 300.00589 * 6 5 4 33 33 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 34 34 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 36 36 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 37 37 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 38 38 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 39 39 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 40 40 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 41 41 H 0.97003 * 120.00052 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 43 43 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 44 44 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 45 45 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5356 0.0006 5 8 4.7953 1.2217 0.0004 6 6 5.9989 0.4512 0.0005 7 6 7.1880 1.3770 0.0009 8 8 7.0212 2.5782 0.0014 9 7 8.4368 0.8700 0.0005 10 6 9.6059 1.7596 0.0003 11 6 10.5211 1.3765 1.1675 12 6 10.8627 -0.1153 1.0702 13 6 11.8035 -0.4975 2.2147 14 7 13.0782 0.2066 2.0548 15 6 14.0823 0.0203 2.9670 16 1 13.9344 -0.6453 3.8046 17 6 15.2904 0.6871 2.8153 18 7 15.4708 1.4979 1.7943 19 14 16.6604 0.4325 4.0593 20 1 17.5165 -0.7016 3.6276 21 1 17.4820 1.6662 4.1503 22 1 16.0719 0.1304 5.3888 23 6 9.5794 -0.9434 1.1670 24 6 8.6547 -0.5831 -0.0007 25 7 3.4764 -0.7621 -0.0044 26 8 2.3085 -1.0750 0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 2.0311 2.1263 -0.0005 31 1 6.0277 -0.1776 -0.8893 32 1 6.0278 -0.1772 0.8907 33 1 10.1474 1.6512 -0.9395 34 1 9.2789 2.7929 0.1163 35 1 11.4364 1.9665 1.1211 36 1 10.0095 1.5713 2.1101 37 1 11.3518 -0.3137 0.1165 38 1 11.3507 -0.2178 3.1659 39 1 11.9779 -1.5733 2.1978 40 1 13.2108 0.8047 1.3028 41 1 16.3148 1.9641 1.6884 42 1 9.0768 -0.7268 2.1096 43 1 9.8260 -2.0042 1.1216 44 1 7.7001 -1.0958 0.1172 45 1 9.1165 -0.8824 -0.9416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205484767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:39 Heat of formation + Delta-G solvation = 4.037011 kcal Electronic energy + Delta-G solvation = -26686.068689 eV Core-core repulsion = 22708.016153 eV Total energy + Delta-G solvation = -3978.052536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.25996 -40.54614 -39.02669 -37.59427 -35.02534 -34.25380 -33.00636 -32.83744 -31.36970 -30.54249 -28.92442 -28.15010 -26.52343 -23.89167 -23.78312 -23.24880 -22.05762 -21.56645 -20.26739 -19.16315 -18.36421 -18.22053 -17.30681 -17.18396 -16.79491 -16.50106 -16.01672 -14.95594 -14.77229 -14.62792 -14.39948 -14.28702 -13.97283 -13.78736 -13.74619 -13.71197 -13.35103 -13.20532 -12.92832 -12.83839 -12.46875 -12.22350 -12.08466 -11.83504 -11.48714 -11.23979 -11.01814 -10.83894 -10.53203 -10.40839 -10.21771 -10.00153 -9.94226 -9.92069 -9.65481 -9.56992 -8.87828 -8.75468 -6.92248 -5.77233 -3.05560 1.01916 1.90019 1.98430 2.34285 2.68951 3.07193 3.43256 3.48458 3.50175 3.80174 4.10674 4.35718 4.51549 4.56698 4.64673 4.65805 4.72609 4.79327 4.87008 4.90386 4.99483 5.12259 5.18727 5.24533 5.29835 5.38475 5.49595 5.52984 5.58876 5.74472 5.87544 5.91626 6.05229 6.12345 6.24945 6.29326 6.45889 6.58116 6.66800 6.76870 6.88793 7.17257 7.69604 7.85224 7.92895 8.41912 9.53105 10.11051 10.45613 11.45655 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035917 B = 0.001914 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.387694 B =14628.190789 C =14989.624398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.008 4.008 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.257 6.257 6 C 0.047 3.953 7 C 0.518 3.482 8 O -0.522 6.522 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.124 4.124 12 C -0.095 4.095 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.127 4.127 24 C 0.103 3.897 25 N -0.411 5.411 26 O 0.098 5.902 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.522 -4.980 -6.678 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.161 6.161 6 C -0.031 4.031 7 C 0.304 3.696 8 O -0.397 6.397 9 N -0.338 5.338 10 C -0.009 4.009 11 C -0.162 4.162 12 C -0.114 4.114 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.166 4.166 24 C -0.019 4.019 25 N -0.139 5.139 26 O 0.038 5.962 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.197 0.803 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.596 -5.086 -6.536 30.733 hybrid contribution 0.836 0.573 0.463 1.114 sum -28.760 -4.513 -6.073 29.739 Atomic orbital electron populations 1.20393 0.83433 1.05004 1.04437 1.24362 0.96512 0.85551 1.00789 1.21816 0.88263 1.01769 1.13608 1.22059 0.88435 0.88060 0.99871 1.86286 1.10011 1.30822 1.89030 1.22550 0.82324 0.93654 1.04615 1.19825 0.83640 0.88757 0.77386 1.90747 1.85112 1.15102 1.48779 1.48057 1.05108 1.07785 1.72808 1.21779 0.84924 0.94712 0.99491 1.21990 0.99817 0.96911 0.97498 1.21371 0.94812 0.94402 1.00774 1.20661 0.86725 0.95108 0.94436 1.42365 1.10554 1.53582 1.31107 1.19231 0.92509 1.21597 1.03760 0.91259 1.24734 0.98085 0.99758 0.98422 1.69653 1.25235 1.32646 1.30682 0.86189 0.82277 0.77007 0.80714 1.21746 1.21767 1.20811 1.21926 0.96094 1.00678 0.97881 1.21902 1.00463 0.79428 1.00143 1.74162 0.97974 1.14176 1.27611 1.84792 1.10281 1.31985 1.69119 0.89039 0.89466 0.88721 0.80348 0.88620 0.88503 0.91040 0.89003 0.89115 0.91777 0.90828 0.96444 0.96367 0.78245 0.93524 0.91397 0.90263 0.90276 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.45 36.01 0.38 0.22 16 2 C -0.01 -0.06 7.48 -35.36 -0.26 -0.32 16 3 C -0.23 -1.97 11.11 -39.23 -0.44 -2.41 16 4 C 0.21 2.46 8.01 -16.66 -0.13 2.32 16 5 O -0.26 -3.39 9.74 -38.74 -0.38 -3.77 16 6 C 0.05 0.53 4.49 36.00 0.16 0.69 16 7 C 0.52 7.17 7.77 -10.99 -0.09 7.09 16 8 O -0.52 -9.29 15.91 -14.35 -0.23 -9.52 16 9 N -0.60 -7.51 2.97 -172.74 -0.51 -8.02 16 10 C 0.11 1.54 6.42 -3.71 -0.02 1.51 16 11 C -0.12 -1.91 5.27 -26.45 -0.14 -2.05 16 12 C -0.09 -1.43 2.19 -90.42 -0.20 -1.63 16 13 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 14 N -0.73 -18.24 5.32 -59.91 -0.32 -18.55 16 15 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 19 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.13 -1.46 5.37 -26.59 -0.14 -1.60 16 24 C 0.10 1.01 6.34 -3.68 -0.02 0.99 16 25 N -0.41 -4.62 11.54 30.38 0.35 -4.27 16 26 O 0.10 0.91 11.19 17.06 0.19 1.10 16 27 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 32 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 35 H 0.09 1.60 7.16 -51.93 -0.37 1.23 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -35.14 372.98 -7.51 -42.65 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.75 Total: 4.18 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.18 Total: 0.53 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.24 Total: -58.25 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.41 Total: -12.19 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.14 -7.51 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205484767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.687 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds