Wall clock time and date at job start Tue Mar 31 2020 14:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35452 * 126.77596 * 2 1 4 4 C 1.41379 * 103.98472 * 180.10078 * 3 2 1 5 5 C 1.50701 * 126.79954 * 179.88728 * 4 3 2 6 6 O 1.42902 * 109.47141 * 359.71288 * 5 4 3 7 7 C 1.42899 * 114.00111 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47177 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00357 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99775 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99945 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.64074 * 31.85280 * 11 10 8 13 13 C 1.54337 * 110.84675 * 268.68914 * 11 10 8 14 14 N 1.47023 * 107.26268 * 219.67385 * 13 11 10 15 15 C 1.36934 * 125.64748 * 178.84941 * 14 13 11 16 16 H 1.08001 * 119.99975 * 185.72945 * 15 14 13 17 17 C 1.38805 * 120.00115 * 5.46021 * 15 14 13 18 18 N 1.31628 * 120.00029 * 353.47648 * 17 15 14 19 19 Si 1.86797 * 120.00348 * 173.48127 * 17 15 14 20 20 H 1.48504 * 109.47287 * 94.97875 * 19 17 15 21 21 H 1.48501 * 109.47209 * 214.98161 * 19 17 15 22 22 H 1.48504 * 109.47224 * 334.98137 * 19 17 15 23 23 C 1.47427 * 108.70434 * 358.58298 * 14 13 11 24 24 C 1.54910 * 104.83113 * 24.35664 * 23 14 13 25 25 H 1.09000 * 111.00154 * 81.06228 * 24 23 14 26 26 C 1.52996 * 111.00289 * 204.87661 * 24 23 14 27 27 N 1.30164 * 106.39412 * 359.62570 * 4 3 2 28 28 O 1.20920 * 111.61203 * 0.24358 * 27 4 3 29 29 H 1.08998 * 109.46577 * 180.30116 * 1 2 3 30 30 H 1.08995 * 109.46778 * 300.29494 * 1 2 3 31 31 H 1.08998 * 109.46986 * 60.30001 * 1 2 3 32 32 H 1.08001 * 128.00464 * 359.96184 * 3 2 1 33 33 H 1.08993 * 109.47040 * 239.70845 * 5 4 3 34 34 H 1.08999 * 109.47003 * 119.70861 * 5 4 3 35 35 H 1.09001 * 109.47182 * 59.99982 * 7 6 5 36 36 H 1.09002 * 109.47027 * 299.99864 * 7 6 5 37 37 H 0.96998 * 120.00136 * 359.97438 * 10 8 7 38 38 H 1.08992 * 109.99336 * 100.19869 * 13 11 10 39 39 H 1.09002 * 109.77643 * 339.02487 * 13 11 10 40 40 H 0.96998 * 120.00098 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.36568 * 143.19663 * 23 14 13 42 42 H 1.08999 * 110.37043 * 265.51851 * 23 14 13 43 43 H 1.09000 * 109.47211 * 58.54927 * 26 24 23 44 44 H 1.09003 * 109.46662 * 178.55175 * 26 24 23 45 45 H 1.09001 * 109.47573 * 298.54401 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9211 1.3001 -0.0058 6 8 4.6499 2.7031 -0.0130 7 6 5.8214 3.5215 -0.0162 8 6 5.4195 4.9739 -0.0244 9 8 4.2455 5.2783 -0.0278 10 7 6.3647 5.9346 -0.0291 11 6 5.9740 7.3466 -0.0365 12 1 5.0364 7.4886 0.5008 13 6 5.8598 7.8773 -1.4813 14 7 6.4133 9.2393 -1.4908 15 6 6.5176 10.0507 -2.5889 16 1 7.0239 11.0015 -2.5116 17 6 5.9775 9.6487 -3.8027 18 7 5.4795 8.4372 -3.9325 19 14 5.9573 10.8268 -5.2521 20 1 7.1484 10.5831 -6.1049 21 1 4.7241 10.6088 -6.0502 22 1 5.9834 12.2255 -4.7536 23 6 6.8315 9.5893 -0.1211 24 6 7.0950 8.2295 0.5727 25 1 8.0808 7.8433 0.3136 26 6 6.9371 8.3483 2.0899 27 7 3.4764 -0.7562 0.0046 28 8 2.3096 -1.0736 0.0060 29 1 -0.3632 -1.0277 0.0054 30 1 -0.3633 0.5184 0.8873 31 1 -0.3633 0.5092 -0.8926 32 1 2.0345 2.1271 -0.0006 33 1 5.4948 1.0363 -0.8942 34 1 5.4942 1.0454 0.8857 35 1 6.4142 3.3039 -0.9046 36 1 6.4128 3.3128 0.8754 37 1 7.3037 5.6912 -0.0268 38 1 4.8143 7.8998 -1.7884 39 1 6.4326 7.2397 -2.1547 40 1 5.1024 8.1561 -4.7808 41 1 7.7430 10.1866 -0.1437 42 1 6.0358 10.1292 0.3923 43 1 5.9307 8.6949 2.3245 44 1 7.1024 7.3739 2.5497 45 1 7.6660 9.0606 2.4764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207677437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:34 Heat of formation + Delta-G solvation = -15.700286 kcal Electronic energy + Delta-G solvation = -26906.523895 eV Core-core repulsion = 22927.615485 eV Total energy + Delta-G solvation = -3978.908409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.98053 -41.04158 -39.47211 -38.53358 -35.62406 -35.28173 -34.31196 -34.27312 -32.18033 -30.61282 -29.11711 -28.61709 -27.62399 -27.11573 -25.18526 -23.96280 -22.47469 -21.57460 -21.46989 -20.91619 -18.90476 -18.78277 -18.54379 -17.99813 -17.78108 -17.34804 -16.94783 -16.76047 -15.96957 -15.73370 -15.46610 -15.33662 -14.77946 -14.60104 -14.44164 -14.12233 -14.05442 -14.02331 -13.82101 -13.46563 -13.33523 -13.25487 -13.04773 -12.91514 -12.87971 -12.57419 -12.21951 -12.18632 -12.03311 -11.85755 -11.65419 -11.47380 -11.41980 -10.84208 -10.72664 -10.66933 -10.28203 -9.99749 -8.92663 -7.86955 -5.23394 0.43079 1.15382 1.43515 1.46423 1.55636 1.58682 1.69425 2.15728 2.47279 2.63256 3.31696 3.38523 3.56071 3.66742 3.73828 3.83820 4.05027 4.05895 4.12183 4.15744 4.22807 4.26632 4.37114 4.41150 4.46548 4.51703 4.63348 4.70992 4.73952 4.87443 4.88860 4.96946 5.07493 5.08629 5.21937 5.22278 5.28874 5.46224 5.51238 5.61849 5.76780 5.91127 6.15982 6.61823 7.05669 7.18347 7.30860 7.75114 8.39098 9.22666 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.002501 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.560349 B =11193.366716 C =12419.112799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.022 4.022 3 C -0.236 4.236 4 C 0.007 3.993 5 C 0.143 3.857 6 O -0.387 6.387 7 C 0.054 3.946 8 C 0.506 3.494 9 O -0.577 6.577 10 N -0.697 5.697 11 C 0.138 3.862 12 H 0.071 0.929 13 C 0.186 3.814 14 N -0.628 5.628 15 C -0.241 4.241 16 H 0.089 0.911 17 C -0.070 4.070 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.265 1.265 23 C 0.131 3.869 24 C -0.092 4.092 25 H 0.096 0.904 26 C -0.129 4.129 27 N -0.383 5.383 28 O 0.092 5.908 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.417 0.583 38 H -0.010 1.010 39 H 0.017 0.983 40 H 0.244 0.756 41 H 0.056 0.944 42 H 0.023 0.977 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -16.287 13.607 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.258 4.258 4 C -0.151 4.151 5 C 0.066 3.934 6 O -0.305 6.305 7 C -0.025 4.025 8 C 0.293 3.707 9 O -0.456 6.456 10 N -0.350 5.350 11 C 0.031 3.969 12 H 0.089 0.911 13 C 0.060 3.940 14 N -0.355 5.355 15 C -0.370 4.370 16 H 0.106 0.894 17 C -0.263 4.263 18 N -0.600 5.600 19 Si 0.806 3.194 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.190 1.190 23 C 0.006 3.994 24 C -0.112 4.112 25 H 0.115 0.885 26 C -0.187 4.187 27 N -0.091 5.091 28 O 0.027 5.973 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.186 0.814 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.255 0.745 38 H 0.008 0.992 39 H 0.035 0.965 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.140 -17.008 13.418 21.665 hybrid contribution -0.120 1.291 -1.431 1.931 sum -0.260 -15.718 11.988 19.769 Atomic orbital electron populations 1.20587 0.80745 1.06182 1.05517 1.25211 0.97949 0.84830 1.00591 1.22536 0.91349 1.01775 1.10142 1.23528 0.98259 0.90279 1.03052 1.20491 0.89886 0.79209 1.03831 1.87926 1.30778 1.15871 1.95934 1.22335 0.88120 0.85974 1.06098 1.20971 0.85633 0.88724 0.75402 1.90715 1.20322 1.84219 1.50327 1.45581 1.10136 1.04829 1.74489 1.22033 0.98473 0.80257 0.96110 0.91054 1.21131 0.95055 0.85595 0.92232 1.44733 1.72812 1.13631 1.04329 1.19498 1.30065 0.99650 0.87823 0.89364 1.25742 1.01045 0.98503 1.00976 1.70241 1.46589 1.18535 1.24599 0.85063 0.76610 0.78747 0.78936 1.21055 1.22546 1.18996 1.21872 0.97608 0.95703 0.84245 1.22539 0.97838 0.94326 0.96485 0.88546 1.21653 1.02080 1.02965 0.91959 1.73729 0.98093 1.15442 1.21860 1.84761 1.11010 1.33701 1.67835 0.88011 0.87599 0.87977 0.81372 0.89183 0.88239 0.87364 0.85530 0.74508 0.99177 0.96501 0.94689 0.92550 0.95897 0.93416 0.90948 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.45 71.24 0.74 0.01 16 2 C -0.02 -0.44 7.49 25.04 0.19 -0.25 16 3 C -0.24 -5.81 10.45 22.40 0.23 -5.58 16 4 C 0.01 0.17 7.28 43.58 0.32 0.48 16 5 C 0.14 2.91 6.56 71.24 0.47 3.37 16 6 O -0.39 -10.24 9.37 -129.94 -1.22 -11.46 16 7 C 0.05 1.12 6.42 71.23 0.46 1.58 16 8 C 0.51 16.30 7.91 87.66 0.69 17.00 16 9 O -0.58 -25.54 16.14 16.01 0.26 -25.28 16 10 N -0.70 -20.48 5.11 -436.90 -2.23 -22.71 16 11 C 0.14 5.16 2.78 46.18 0.13 5.29 16 12 H 0.07 2.97 7.42 -2.39 -0.02 2.95 16 13 C 0.19 9.60 5.14 86.73 0.45 10.05 16 14 N -0.63 -32.62 3.39 -691.97 -2.35 -34.96 16 15 C -0.24 -13.67 10.26 84.03 0.86 -12.81 16 16 H 0.09 4.69 7.84 -2.91 -0.02 4.67 16 17 C -0.07 -4.08 5.48 84.86 0.47 -3.61 16 18 N -0.95 -59.62 10.36 21.65 0.22 -59.40 16 19 Si 0.98 46.68 29.56 68.60 2.03 48.71 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C 0.13 5.10 6.70 86.86 0.58 5.69 16 24 C -0.09 -2.77 3.27 -9.40 -0.03 -2.80 16 25 H 0.10 2.58 8.01 -2.39 -0.02 2.56 16 26 C -0.13 -2.86 9.29 71.98 0.67 -2.19 16 27 N -0.38 -9.84 12.07 -49.56 -0.60 -10.43 16 28 O 0.09 2.11 11.20 71.63 0.80 2.91 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.17 4.42 8.05 -2.91 -0.02 4.40 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 8.65 8.56 -92.71 -0.79 7.86 16 38 H -0.01 -0.63 7.39 -2.39 -0.02 -0.65 16 39 H 0.02 0.95 7.41 -2.39 -0.02 0.93 16 40 H 0.24 15.00 8.31 -92.71 -0.77 14.22 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 43 H 0.05 1.15 8.11 -2.39 -0.02 1.13 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -85.04 378.55 3.34 -81.69 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.21 Total: 14.71 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 6.22 Total: 16.22 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -4.95 Total: -127.51 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.16 Total: -33.83 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -85.04 3.34 -81.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207677437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.994 kcal (2) G-P(sol) polarization free energy of solvation -85.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds