Wall clock time and date at job start Tue Mar 31 2020 14:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35446 * 126.77959 * 2 1 4 4 C 1.41379 * 103.98652 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.80093 * 180.26598 * 4 3 2 6 6 O 1.42905 * 109.46953 * 359.70241 * 5 4 3 7 7 C 1.42902 * 113.99510 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46725 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00462 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99759 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63195 * 0.02562 * 10 8 7 12 12 C 1.53198 * 108.76791 * 233.58255 * 11 10 8 13 13 C 1.53034 * 109.31425 * 305.35914 * 12 11 10 14 14 C 1.53042 * 109.53754 * 61.37010 * 13 12 11 15 15 H 1.08996 * 109.49456 * 58.61686 * 14 13 12 16 16 N 1.46497 * 109.49851 * 178.68014 * 14 13 12 17 17 C 1.36936 * 120.00180 * 204.99824 * 16 14 13 18 18 H 1.07997 * 120.00096 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00212 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99793 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00161 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47013 * 59.99973 * 21 19 17 23 23 H 1.48493 * 109.46968 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46915 * 300.00072 * 21 19 17 25 25 C 1.46929 * 120.62573 * 179.71901 * 10 8 7 26 26 N 1.30174 * 106.39399 * 359.97438 * 4 3 2 27 27 O 1.20918 * 111.60837 * 0.02562 * 26 4 3 28 28 H 1.08994 * 109.47535 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46661 * 300.00123 * 1 2 3 30 30 H 1.09000 * 109.47511 * 59.99723 * 1 2 3 31 31 H 1.08001 * 128.00627 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.47712 * 119.70624 * 5 4 3 33 33 H 1.09004 * 109.46851 * 239.70844 * 5 4 3 34 34 H 1.09000 * 109.46836 * 299.99926 * 7 6 5 35 35 H 1.08996 * 109.47535 * 60.00179 * 7 6 5 36 36 H 1.08992 * 109.58273 * 353.36630 * 11 10 8 37 37 H 1.09000 * 109.58967 * 113.79429 * 11 10 8 38 38 H 1.08994 * 109.49586 * 65.31872 * 12 11 10 39 39 H 1.09008 * 109.49138 * 185.37795 * 12 11 10 40 40 H 1.09005 * 109.46313 * 181.38806 * 13 12 11 41 41 H 1.09003 * 109.46091 * 301.36230 * 13 12 11 42 42 H 0.97011 * 119.99945 * 25.00314 * 16 14 13 43 43 H 0.97000 * 119.99825 * 179.97438 * 20 19 17 44 44 H 1.09009 * 109.58338 * 246.20213 * 25 10 8 45 45 H 1.08992 * 109.58992 * 6.62693 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5371 0.0006 5 6 4.9211 1.2999 0.0065 6 8 4.6500 2.7030 0.0045 7 6 5.8216 3.5212 0.0092 8 6 5.4198 4.9736 0.0072 9 8 4.2458 5.2781 0.0019 10 7 6.3651 5.9343 0.0115 11 6 7.7913 5.5812 0.0174 12 6 8.4718 6.2983 1.1877 13 6 8.1967 7.8006 1.0897 14 6 6.6897 8.0519 1.1798 15 1 6.3102 7.6540 2.1209 16 7 6.4296 9.4922 1.1176 17 6 5.2874 10.0062 1.6710 18 1 4.5785 9.3499 2.1537 19 6 5.0411 11.3711 1.6125 20 7 5.9053 12.1711 1.0247 21 14 3.4833 12.0724 2.3681 22 1 3.4558 11.7648 3.8206 23 1 3.4576 13.5442 2.1727 24 1 2.2979 11.4655 1.7110 25 6 5.9889 7.3546 0.0035 26 7 3.4763 -0.7565 0.0015 27 8 2.3095 -1.0737 0.0010 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 2.0346 2.1270 -0.0004 32 1 5.4903 1.0410 0.8992 33 1 5.4987 1.0402 -0.8807 34 1 6.4097 3.3085 0.9018 35 1 6.4175 3.3076 -0.8781 36 1 7.9002 4.5033 0.1362 37 1 8.2495 5.8958 -0.9203 38 1 8.0754 5.9164 2.1284 39 1 9.5466 6.1214 1.1472 40 1 8.7003 8.3161 1.9075 41 1 8.5711 8.1770 0.1377 42 1 7.0665 10.0819 0.6843 43 1 5.7331 13.1248 0.9835 44 1 6.3035 7.8106 -0.9354 45 1 4.9085 7.4471 0.1130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208400786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:07 Heat of formation + Delta-G solvation = -1.852024 kcal Electronic energy + Delta-G solvation = -26858.992598 eV Core-core repulsion = 22880.684695 eV Total energy + Delta-G solvation = -3978.307903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.16864 -40.08200 -38.28360 -37.06319 -34.54536 -34.45791 -33.59949 -32.36732 -31.23951 -29.53347 -28.16251 -28.01041 -26.80152 -24.70490 -23.92171 -23.13205 -21.93783 -20.75851 -20.25145 -18.86614 -17.96467 -17.77870 -17.11572 -17.07511 -16.59120 -16.51554 -15.52958 -15.01414 -14.93473 -14.59442 -14.22632 -14.09337 -13.88500 -13.80678 -13.59486 -13.48845 -13.17009 -13.09943 -12.68619 -12.57202 -12.41843 -12.22731 -12.08023 -11.44916 -11.37098 -11.08557 -10.84480 -10.70513 -10.62923 -10.59966 -10.24819 -9.91923 -9.86752 -9.76053 -9.53044 -9.52780 -9.08566 -8.39158 -7.01771 -5.79877 -3.09834 1.20138 1.97400 2.53941 2.72314 2.86625 3.41673 3.45979 3.49305 3.51465 4.09603 4.32150 4.54059 4.56797 4.71620 4.76072 4.83827 4.86447 4.91507 4.98302 5.05594 5.06361 5.07151 5.13823 5.18951 5.43136 5.45410 5.48775 5.54470 5.56884 5.75224 5.86952 5.88985 5.98560 6.12280 6.17012 6.30502 6.44958 6.56401 6.74257 6.79903 6.98161 7.57702 7.70431 7.98016 8.33034 8.38649 9.50074 10.03614 10.38813 11.42237 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.002479 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.373010 B =11292.717951 C =12988.431321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.204 4.204 4 C 0.018 3.982 5 C 0.143 3.857 6 O -0.355 6.355 7 C 0.048 3.952 8 C 0.511 3.489 9 O -0.520 6.520 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.051 0.949 16 N -0.718 5.718 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.094 3.906 26 N -0.364 5.364 27 O 0.099 5.901 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.179 0.821 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -24.983 -3.315 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.226 4.226 4 C -0.140 4.140 5 C 0.066 3.934 6 O -0.273 6.273 7 C -0.032 4.032 8 C 0.297 3.703 9 O -0.395 6.395 10 N -0.342 5.342 11 C -0.018 4.018 12 C -0.169 4.169 13 C -0.165 4.165 14 C 0.057 3.943 15 H 0.070 0.930 16 N -0.358 5.358 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.030 4.030 26 N -0.069 5.069 27 O 0.032 5.968 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.196 0.804 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.509 -25.672 -3.220 25.878 hybrid contribution -0.540 1.355 0.184 1.470 sum -0.031 -24.317 -3.036 24.506 Atomic orbital electron populations 1.20346 0.83792 1.04514 1.04415 1.24558 0.96482 0.85902 1.03312 1.22477 0.90654 1.01626 1.07809 1.23109 0.97170 0.90098 1.03576 1.20307 0.90437 0.80708 1.01973 1.87973 1.29323 1.14453 1.95529 1.22317 0.88335 0.90036 1.02541 1.20042 0.86176 0.86555 0.77544 1.90736 1.17567 1.82813 1.48348 1.48245 1.05625 1.07343 1.72943 1.21771 0.81130 0.99326 0.99535 1.21888 1.00036 0.96718 0.98271 1.21829 0.97928 0.94369 1.02365 1.20587 0.91885 0.86344 0.95476 0.93048 1.42373 1.24717 1.00352 1.68386 1.19226 0.97722 0.91122 1.29423 0.91082 1.24751 0.98609 0.96121 1.01158 1.69651 1.36237 1.03607 1.48539 0.86257 0.83063 0.77860 0.78992 1.21193 1.21670 1.21068 1.22922 1.02884 0.76513 1.00701 1.73758 0.97445 1.15279 1.20444 1.84799 1.11032 1.33222 1.67746 0.89969 0.89010 0.89028 0.80362 0.90685 0.90733 0.90034 0.90138 0.90607 0.91111 0.91531 0.90903 0.91333 0.91972 0.78055 0.93398 0.91931 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 36.01 0.38 0.00 16 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.63 16 3 C -0.20 -2.30 10.45 -39.38 -0.41 -2.71 16 4 C 0.02 0.22 7.28 -82.10 -0.60 -0.38 16 5 C 0.14 1.42 6.56 36.01 0.24 1.65 16 6 O -0.36 -4.50 9.37 -55.14 -0.52 -5.01 16 7 C 0.05 0.51 4.76 36.00 0.17 0.68 16 8 C 0.51 7.95 7.78 -10.98 -0.09 7.86 16 9 O -0.52 -10.65 15.91 -14.35 -0.23 -10.88 16 10 N -0.61 -8.85 2.97 -172.48 -0.51 -9.36 16 11 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 12 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 13 C -0.13 -1.89 5.35 -26.69 -0.14 -2.03 16 14 C 0.17 3.26 2.94 -67.57 -0.20 3.07 16 15 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 16 N -0.72 -17.62 5.12 -53.08 -0.27 -17.90 16 17 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.09 1.74 6.05 -3.47 -0.02 1.72 16 26 N -0.36 -4.44 12.07 33.42 0.40 -4.03 16 27 O 0.10 1.09 11.20 17.17 0.19 1.28 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.18 2.05 8.05 -52.49 -0.42 1.62 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 35 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 36 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.39 9.93 7.80 -40.81 -0.32 9.62 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 45 H 0.09 2.01 7.00 -51.93 -0.36 1.65 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -35.05 375.73 -7.78 -42.83 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.84 Total: 5.59 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.37 Total: 1.39 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.34 Total: -58.45 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.55 Total: -14.61 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.05 -7.78 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208400786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.979 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds