Wall clock time and date at job start Tue Mar 31 2020 14:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35446 * 126.77959 * 2 1 4 4 C 1.41379 * 103.98652 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.80093 * 180.26598 * 4 3 2 6 6 O 1.42905 * 109.46953 * 359.70241 * 5 4 3 7 7 C 1.42902 * 113.99510 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46725 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00462 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99759 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63195 * 0.02562 * 10 8 7 12 12 C 1.53198 * 108.76791 * 233.58255 * 11 10 8 13 13 C 1.53034 * 109.31425 * 305.35914 * 12 11 10 14 14 C 1.53042 * 109.53754 * 61.37010 * 13 12 11 15 15 H 1.08996 * 109.49456 * 58.61686 * 14 13 12 16 16 N 1.46497 * 109.49851 * 178.68014 * 14 13 12 17 17 C 1.36936 * 120.00180 * 204.99824 * 16 14 13 18 18 H 1.07997 * 120.00096 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00212 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99793 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00161 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47013 * 59.99973 * 21 19 17 23 23 H 1.48493 * 109.46968 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46915 * 300.00072 * 21 19 17 25 25 C 1.46929 * 120.62573 * 179.71901 * 10 8 7 26 26 N 1.30174 * 106.39399 * 359.97438 * 4 3 2 27 27 O 1.20918 * 111.60837 * 0.02562 * 26 4 3 28 28 H 1.08994 * 109.47535 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46661 * 300.00123 * 1 2 3 30 30 H 1.09000 * 109.47511 * 59.99723 * 1 2 3 31 31 H 1.08001 * 128.00627 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.47712 * 119.70624 * 5 4 3 33 33 H 1.09004 * 109.46851 * 239.70844 * 5 4 3 34 34 H 1.09000 * 109.46836 * 299.99926 * 7 6 5 35 35 H 1.08996 * 109.47535 * 60.00179 * 7 6 5 36 36 H 1.08992 * 109.58273 * 353.36630 * 11 10 8 37 37 H 1.09000 * 109.58967 * 113.79429 * 11 10 8 38 38 H 1.08994 * 109.49586 * 65.31872 * 12 11 10 39 39 H 1.09008 * 109.49138 * 185.37795 * 12 11 10 40 40 H 1.09005 * 109.46313 * 181.38806 * 13 12 11 41 41 H 1.09003 * 109.46091 * 301.36230 * 13 12 11 42 42 H 0.97011 * 119.99945 * 25.00314 * 16 14 13 43 43 H 0.97000 * 119.99825 * 179.97438 * 20 19 17 44 44 H 1.09009 * 109.58338 * 246.20213 * 25 10 8 45 45 H 1.08992 * 109.58992 * 6.62693 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5371 0.0006 5 6 4.9211 1.2999 0.0065 6 8 4.6500 2.7030 0.0045 7 6 5.8216 3.5212 0.0092 8 6 5.4198 4.9736 0.0072 9 8 4.2458 5.2781 0.0019 10 7 6.3651 5.9343 0.0115 11 6 7.7913 5.5812 0.0174 12 6 8.4718 6.2983 1.1877 13 6 8.1967 7.8006 1.0897 14 6 6.6897 8.0519 1.1798 15 1 6.3102 7.6540 2.1209 16 7 6.4296 9.4922 1.1176 17 6 5.2874 10.0062 1.6710 18 1 4.5785 9.3499 2.1537 19 6 5.0411 11.3711 1.6125 20 7 5.9053 12.1711 1.0247 21 14 3.4833 12.0724 2.3681 22 1 3.4558 11.7648 3.8206 23 1 3.4576 13.5442 2.1727 24 1 2.2979 11.4655 1.7110 25 6 5.9889 7.3546 0.0035 26 7 3.4763 -0.7565 0.0015 27 8 2.3095 -1.0737 0.0010 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 2.0346 2.1270 -0.0004 32 1 5.4903 1.0410 0.8992 33 1 5.4987 1.0402 -0.8807 34 1 6.4097 3.3085 0.9018 35 1 6.4175 3.3076 -0.8781 36 1 7.9002 4.5033 0.1362 37 1 8.2495 5.8958 -0.9203 38 1 8.0754 5.9164 2.1284 39 1 9.5466 6.1214 1.1472 40 1 8.7003 8.3161 1.9075 41 1 8.5711 8.1770 0.1377 42 1 7.0665 10.0819 0.6843 43 1 5.7331 13.1248 0.9835 44 1 6.3035 7.8106 -0.9354 45 1 4.9085 7.4471 0.1130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208400786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:06 Heat of formation + Delta-G solvation = -25.960715 kcal Electronic energy + Delta-G solvation = -26860.038030 eV Core-core repulsion = 22880.684695 eV Total energy + Delta-G solvation = -3979.353335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.97766 -41.25983 -39.26310 -38.32222 -36.22614 -35.29050 -34.29404 -33.95229 -32.72687 -30.80905 -29.42442 -28.63286 -27.75291 -25.91562 -25.74179 -23.95958 -23.24364 -21.84677 -21.32908 -20.05149 -19.13183 -18.78033 -18.66445 -18.04082 -17.54859 -17.38579 -16.85530 -16.42756 -15.99596 -15.83252 -15.49959 -15.43121 -15.15597 -14.96512 -14.51676 -14.30524 -14.14800 -13.98823 -13.92285 -13.64825 -13.45153 -13.26256 -13.11471 -12.89190 -12.85820 -12.49383 -12.26586 -12.18482 -12.01254 -11.88536 -11.66983 -11.43061 -11.34329 -11.11289 -10.76893 -10.67089 -10.28472 -9.75613 -9.02275 -7.99913 -5.29012 0.42780 1.15394 1.43134 1.45961 1.52090 1.55460 1.59811 2.14520 2.46852 2.54483 3.31358 3.33220 3.53246 3.67421 3.76943 4.00910 4.04685 4.07389 4.09190 4.20671 4.23183 4.25723 4.33687 4.35772 4.39793 4.40793 4.46460 4.62823 4.70061 4.77058 4.86714 4.88615 4.91600 4.96610 5.05294 5.16738 5.21616 5.39140 5.42304 5.47563 5.55574 5.91266 6.23009 6.45576 7.16372 7.18077 7.29494 8.02270 8.27060 9.22435 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.002479 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.373010 B =11292.717951 C =12988.431321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.022 4.022 3 C -0.237 4.237 4 C 0.007 3.993 5 C 0.143 3.857 6 O -0.389 6.389 7 C 0.055 3.945 8 C 0.500 3.500 9 O -0.585 6.585 10 N -0.603 5.603 11 C 0.099 3.901 12 C -0.122 4.122 13 C -0.120 4.120 14 C 0.167 3.833 15 H 0.031 0.969 16 N -0.730 5.730 17 C -0.247 4.247 18 H 0.064 0.936 19 C -0.068 4.068 20 N -0.963 5.963 21 Si 0.968 3.032 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.108 3.892 26 N -0.383 5.383 27 O 0.091 5.909 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.377 0.623 43 H 0.253 0.747 44 H 0.059 0.941 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -27.602 -3.351 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.259 4.259 4 C -0.151 4.151 5 C 0.066 3.934 6 O -0.307 6.307 7 C -0.024 4.024 8 C 0.289 3.711 9 O -0.464 6.464 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.161 4.161 13 C -0.158 4.158 14 C 0.057 3.943 15 H 0.049 0.951 16 N -0.370 5.370 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.261 4.261 20 N -0.613 5.613 21 Si 0.796 3.204 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.017 4.017 26 N -0.091 5.091 27 O 0.026 5.974 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.210 0.790 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.007 -28.365 -3.250 28.621 hybrid contribution -1.013 2.104 0.188 2.343 sum 0.994 -26.262 -3.062 26.458 Atomic orbital electron populations 1.20584 0.80864 1.06159 1.05493 1.25195 0.97915 0.84882 1.00588 1.22529 0.91414 1.01712 1.10200 1.23552 0.98274 0.90255 1.02982 1.20505 0.89794 0.79073 1.03986 1.87936 1.30892 1.15949 1.95934 1.22413 0.88091 0.85785 1.06080 1.21095 0.85285 0.88841 0.75869 1.90709 1.20409 1.84070 1.51229 1.48275 1.07943 1.05297 1.72233 1.22216 0.77723 1.02205 1.00082 1.21890 1.02639 0.92920 0.98602 1.21754 0.93683 0.98032 1.02318 1.20768 0.95398 0.83499 0.94656 0.95066 1.42519 1.23646 1.02590 1.68246 1.19470 0.98452 0.91322 1.28597 0.91815 1.25486 1.01615 0.96546 1.02413 1.69780 1.37858 1.03485 1.50190 0.85307 0.79631 0.76975 0.78456 1.20353 1.21490 1.21010 1.22294 0.99812 0.79723 0.99903 1.73737 0.98051 1.15465 1.21841 1.84765 1.11045 1.33700 1.67880 0.88055 0.87866 0.87777 0.81425 0.88604 0.88452 0.86380 0.86078 0.85863 0.89362 0.91647 0.86894 0.92185 0.91457 0.78994 0.93797 0.92238 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.45 71.24 0.74 0.10 16 2 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.24 -5.36 10.45 22.40 0.23 -5.13 16 4 C 0.01 0.17 7.28 43.58 0.32 0.48 16 5 C 0.14 2.48 6.56 71.24 0.47 2.95 16 6 O -0.39 -9.17 9.37 -129.94 -1.22 -10.39 16 7 C 0.06 0.98 4.76 71.24 0.34 1.32 16 8 C 0.50 15.11 7.78 87.66 0.68 15.79 16 9 O -0.58 -24.98 15.91 16.01 0.25 -24.72 16 10 N -0.60 -16.79 2.97 -817.99 -2.43 -19.21 16 11 C 0.10 1.56 6.34 86.36 0.55 2.11 16 12 C -0.12 -2.17 6.08 30.67 0.19 -1.98 16 13 C -0.12 -3.41 5.35 30.62 0.16 -3.25 16 14 C 0.17 6.60 2.94 45.23 0.13 6.73 16 15 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 16 N -0.73 -37.16 5.12 -321.83 -1.65 -38.81 16 17 C -0.25 -14.19 9.93 84.03 0.83 -13.36 16 18 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.96 -59.05 13.06 21.65 0.28 -58.76 16 21 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 25 C 0.11 4.15 6.05 86.52 0.52 4.67 16 26 N -0.38 -9.03 12.07 -49.55 -0.60 -9.63 16 27 O 0.09 1.93 11.20 71.60 0.80 2.73 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.17 4.09 8.05 -2.91 -0.02 4.06 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.12 1.26 7.69 -2.39 -0.02 1.24 16 35 H 0.12 1.20 7.94 -2.39 -0.02 1.18 16 36 H 0.12 0.88 5.93 -2.39 -0.01 0.86 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.38 20.13 7.80 -92.70 -0.72 19.40 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 45 H 0.04 2.11 7.00 -2.39 -0.02 2.09 16 Total: -1.00 -83.00 375.73 3.58 -79.41 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.28 Total: 23.03 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.83 Total: 6.73 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -4.39 Total: -126.41 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.16 Total: -32.38 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -83.00 3.58 -79.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208400786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.454 kcal (2) G-P(sol) polarization free energy of solvation -82.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds