Wall clock time and date at job start Tue Mar 31 2020 14:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35458 * 126.77882 * 2 1 4 4 C 1.41379 * 103.98745 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.80250 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.47152 * 0.02562 * 5 4 3 7 7 C 1.42894 * 113.99904 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47142 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99970 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00492 * 179.97438 * 8 7 6 11 11 C 1.46928 * 120.62818 * 359.97438 * 10 8 7 12 12 C 1.53198 * 108.77528 * 126.43452 * 11 10 8 13 13 C 1.53038 * 109.31265 * 54.63209 * 12 11 10 14 14 C 1.53038 * 109.54199 * 298.63895 * 13 12 11 15 15 H 1.09005 * 109.49608 * 301.37795 * 14 13 12 16 16 N 1.46496 * 109.50091 * 181.31360 * 14 13 12 17 17 C 1.36939 * 120.00077 * 155.06253 * 16 14 13 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 14 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48490 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 119.99875 * 21 19 17 24 24 H 1.48504 * 109.46636 * 239.99434 * 21 19 17 25 25 C 1.46937 * 120.60890 * 180.02562 * 10 8 7 26 26 N 1.30179 * 106.39763 * 0.26287 * 4 3 2 27 27 O 1.20929 * 111.60232 * 359.53501 * 26 4 3 28 28 H 1.09001 * 109.46880 * 89.99834 * 1 2 3 29 29 H 1.09004 * 109.46665 * 209.99895 * 1 2 3 30 30 H 1.09001 * 109.47006 * 329.99781 * 1 2 3 31 31 H 1.07993 * 128.00393 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47239 * 240.00267 * 5 4 3 33 33 H 1.09004 * 109.47534 * 119.99773 * 5 4 3 34 34 H 1.08998 * 109.47764 * 59.99616 * 7 6 5 35 35 H 1.09003 * 109.47288 * 299.99354 * 7 6 5 36 36 H 1.09002 * 109.58398 * 6.64772 * 11 10 8 37 37 H 1.08998 * 109.58914 * 246.21594 * 11 10 8 38 38 H 1.08999 * 109.49305 * 294.68610 * 12 11 10 39 39 H 1.08994 * 109.52217 * 174.60501 * 12 11 10 40 40 H 1.09000 * 109.46171 * 178.61569 * 13 12 11 41 41 H 1.09002 * 109.44894 * 58.65055 * 13 12 11 42 42 H 0.97004 * 120.00009 * 335.06870 * 16 14 13 43 43 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.55844 * 113.76295 * 25 10 8 45 45 H 1.08999 * 109.60997 * 353.34010 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9211 1.3000 -0.0014 6 8 4.6500 2.7031 -0.0009 7 6 5.8215 3.5214 -0.0021 8 6 5.4197 4.9738 -0.0021 9 8 4.2456 5.2783 -0.0015 10 7 6.3649 5.9345 -0.0026 11 6 7.7911 5.5815 -0.0028 12 6 8.4765 6.2987 -1.1701 13 6 8.2008 7.8009 -1.0732 14 6 6.6943 8.0522 -1.1695 15 1 6.3186 7.6544 -2.1123 16 7 6.4338 9.4925 -1.1082 17 6 5.2932 10.0064 -1.6651 18 1 4.5879 9.3503 -2.1535 19 6 5.0467 11.3712 -1.6074 20 7 5.9066 12.1707 -1.0126 21 14 3.4945 12.0731 -2.3739 22 1 2.6990 10.9735 -2.9763 23 1 2.6888 12.7516 -1.3272 24 1 3.8622 13.0525 -3.4279 25 6 5.9881 7.3548 -0.0020 26 7 3.4764 -0.7564 -0.0066 27 8 2.3095 -1.0737 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 2.0345 2.1270 -0.0004 32 1 5.4940 1.0406 -0.8917 33 1 5.4950 1.0409 0.8883 34 1 6.4126 3.3083 -0.8928 35 1 6.4146 3.3081 0.8872 36 1 7.9006 4.5034 -0.1212 37 1 8.2455 5.8960 0.9367 38 1 8.0839 5.9169 -2.1126 39 1 9.5512 6.1223 -1.1255 40 1 8.7078 8.3165 -1.8889 41 1 8.5715 8.1772 -0.1197 42 1 7.0693 10.0822 -0.6731 43 1 5.7341 13.1244 -0.9720 44 1 6.2953 7.8134 0.9378 45 1 4.9084 7.4469 -0.1202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208400788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:09 Heat of formation + Delta-G solvation = -26.176918 kcal Electronic energy + Delta-G solvation = -26861.247910 eV Core-core repulsion = 22881.885200 eV Total energy + Delta-G solvation = -3979.362710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.97426 -41.26467 -39.27028 -38.32703 -36.23211 -35.29084 -34.29451 -33.95676 -32.73396 -30.81459 -29.43050 -28.63128 -27.75242 -25.92326 -25.75054 -23.96247 -23.24545 -21.85034 -21.32667 -20.05008 -19.13689 -18.78020 -18.66598 -18.04209 -17.54946 -17.38681 -16.86036 -16.42865 -15.99530 -15.83687 -15.50959 -15.43377 -15.15430 -14.96823 -14.51348 -14.31429 -14.14927 -13.97628 -13.93121 -13.65218 -13.44977 -13.26982 -13.12393 -12.92693 -12.86066 -12.50329 -12.18857 -12.17629 -12.02200 -11.88614 -11.67388 -11.43031 -11.34116 -11.13073 -10.77017 -10.67177 -10.28695 -9.75684 -9.02748 -8.00574 -5.29561 0.42732 1.15535 1.42606 1.44202 1.53664 1.55486 1.59888 2.14148 2.46626 2.54156 3.31239 3.32978 3.53241 3.67516 3.76567 4.00575 4.04478 4.07266 4.08708 4.20673 4.22698 4.25897 4.33830 4.35953 4.39740 4.40964 4.46914 4.62727 4.70105 4.76925 4.87311 4.88665 4.91572 4.96527 5.05212 5.16695 5.21315 5.39255 5.42521 5.47455 5.55585 5.91276 6.22767 6.45497 7.16304 7.17925 7.29205 8.01783 8.26563 9.22226 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.002478 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.451297 B =11295.040353 C =12989.581602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.236 4.236 4 C 0.007 3.993 5 C 0.143 3.857 6 O -0.389 6.389 7 C 0.055 3.945 8 C 0.500 3.500 9 O -0.585 6.585 10 N -0.603 5.603 11 C 0.099 3.901 12 C -0.122 4.122 13 C -0.120 4.120 14 C 0.166 3.834 15 H 0.031 0.969 16 N -0.730 5.730 17 C -0.244 4.244 18 H 0.064 0.936 19 C -0.069 4.069 20 N -0.963 5.963 21 Si 0.967 3.033 22 H -0.274 1.274 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.109 3.891 26 N -0.383 5.383 27 O 0.091 5.909 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.378 0.622 43 H 0.253 0.747 44 H 0.059 0.941 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -27.692 3.370 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.258 4.258 4 C -0.151 4.151 5 C 0.066 3.934 6 O -0.307 6.307 7 C -0.024 4.024 8 C 0.289 3.711 9 O -0.464 6.464 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.161 4.161 13 C -0.158 4.158 14 C 0.057 3.943 15 H 0.049 0.951 16 N -0.370 5.370 17 C -0.376 4.376 18 H 0.082 0.918 19 C -0.261 4.261 20 N -0.613 5.613 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.017 4.017 26 N -0.091 5.091 27 O 0.026 5.974 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.210 0.790 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.001 -28.471 3.257 28.727 hybrid contribution -0.999 2.132 -0.197 2.363 sum 1.002 -26.339 3.060 26.535 Atomic orbital electron populations 1.20583 0.80863 1.06082 1.05558 1.25199 0.97913 0.84885 1.00596 1.22545 0.91406 1.01687 1.10173 1.23550 0.98280 0.90271 1.02979 1.20505 0.89794 0.79070 1.03990 1.87934 1.30893 1.15949 1.95935 1.22411 0.88092 0.85777 1.06084 1.21097 0.85287 0.88842 0.75867 1.90711 1.20402 1.84074 1.51227 1.48270 1.07943 1.05279 1.72237 1.22217 0.77699 1.02209 1.00102 1.21891 1.02623 0.92918 0.98628 1.21752 0.93666 0.98040 1.02326 1.20687 0.95406 0.83518 0.94734 0.95117 1.42532 1.23855 1.02582 1.68050 1.19536 0.98590 0.91322 1.28103 0.91801 1.25484 1.01640 0.96562 1.02447 1.69794 1.37993 1.03480 1.50082 0.85165 0.79468 0.78120 0.77594 1.19837 1.21818 1.21402 1.22204 0.99823 0.79751 0.99921 1.73747 0.98039 1.15459 1.21822 1.84760 1.11043 1.33688 1.67928 0.87823 0.87963 0.87939 0.81423 0.88614 0.88436 0.86381 0.86072 0.85855 0.89353 0.91648 0.86885 0.92170 0.91453 0.78984 0.93814 0.92275 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 71.24 0.74 0.10 16 2 C -0.02 -0.41 7.49 25.04 0.19 -0.22 16 3 C -0.24 -5.35 10.45 22.40 0.23 -5.11 16 4 C 0.01 0.16 7.28 43.57 0.32 0.48 16 5 C 0.14 2.48 6.56 71.23 0.47 2.95 16 6 O -0.39 -9.16 9.37 -129.94 -1.22 -10.38 16 7 C 0.06 0.98 4.76 71.24 0.34 1.32 16 8 C 0.50 15.09 7.77 87.66 0.68 15.78 16 9 O -0.58 -24.95 15.91 15.98 0.25 -24.70 16 10 N -0.60 -16.76 2.97 -818.77 -2.43 -19.19 16 11 C 0.10 1.56 6.34 86.36 0.55 2.10 16 12 C -0.12 -2.16 6.08 30.67 0.19 -1.98 16 13 C -0.12 -3.41 5.35 30.62 0.16 -3.24 16 14 C 0.17 6.58 2.92 45.08 0.13 6.71 16 15 H 0.03 1.33 8.08 -2.38 -0.02 1.31 16 16 N -0.73 -37.12 5.12 -322.50 -1.65 -38.78 16 17 C -0.24 -14.01 9.93 84.03 0.83 -13.17 16 18 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 20 N -0.96 -59.06 13.06 21.65 0.28 -58.77 16 21 Si 0.97 47.64 29.55 68.60 2.03 49.67 16 22 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 C 0.11 4.16 6.02 86.38 0.52 4.67 16 26 N -0.38 -9.01 12.07 -49.55 -0.60 -9.61 16 27 O 0.09 1.92 11.20 71.56 0.80 2.72 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.17 4.08 8.05 -2.91 -0.02 4.05 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.12 1.26 7.69 -2.39 -0.02 1.24 16 35 H 0.12 1.20 7.94 -2.39 -0.02 1.18 16 36 H 0.12 0.87 5.93 -2.39 -0.01 0.86 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.38 20.11 7.80 -92.71 -0.72 19.39 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.04 2.12 7.01 -2.39 -0.02 2.10 16 Total: -1.00 -83.06 375.70 3.57 -79.50 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.28 Total: 22.70 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.82 Total: 6.84 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -4.40 Total: -126.35 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.16 Total: -32.35 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -83.06 3.57 -79.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208400788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.320 kcal (2) G-P(sol) polarization free energy of solvation -83.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds