Wall clock time and date at job start Tue Mar 31 2020 14:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 126.78127 * 2 1 4 4 C 1.41372 * 103.98888 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.80161 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47184 * 359.97438 * 5 4 3 7 7 C 1.42902 * 113.99806 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46861 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99990 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00100 * 180.02562 * 8 7 6 11 11 C 1.47018 * 125.64981 * 179.97438 * 10 8 7 12 12 C 1.54325 * 107.40412 * 178.82520 * 11 10 8 13 13 H 1.09000 * 110.72188 * 96.24097 * 12 11 10 14 14 C 1.52995 * 110.72304 * 219.52316 * 12 11 10 15 15 C 1.55405 * 102.82616 * 337.97548 * 12 11 10 16 16 H 1.09000 * 110.89538 * 277.26533 * 15 12 11 17 17 N 1.46505 * 111.03913 * 153.47072 * 15 12 11 18 18 C 1.36935 * 120.00217 * 161.23025 * 17 15 12 19 19 H 1.08006 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00356 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47566 * 89.99661 * 22 20 18 24 24 H 1.48503 * 109.47218 * 210.00283 * 22 20 18 25 25 H 1.48502 * 109.47082 * 329.99719 * 22 20 18 26 26 C 1.47426 * 125.64500 * 359.95253 * 10 8 7 27 27 N 1.30176 * 106.39927 * 0.25811 * 4 3 2 28 28 O 1.20925 * 111.59801 * 359.54003 * 27 4 3 29 29 H 1.08999 * 109.46629 * 89.99968 * 1 2 3 30 30 H 1.08997 * 109.47112 * 210.00464 * 1 2 3 31 31 H 1.09003 * 109.46791 * 330.00428 * 1 2 3 32 32 H 1.08007 * 128.00044 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46937 * 239.99871 * 5 4 3 34 34 H 1.08996 * 109.47604 * 119.99708 * 5 4 3 35 35 H 1.08996 * 109.47181 * 60.00501 * 7 6 5 36 36 H 1.09002 * 109.47258 * 300.00266 * 7 6 5 37 37 H 1.09002 * 109.88241 * 298.32048 * 11 10 8 38 38 H 1.09000 * 109.88049 * 59.33177 * 11 10 8 39 39 H 1.08999 * 109.47083 * 58.54334 * 14 12 11 40 40 H 1.09002 * 109.47293 * 178.54343 * 14 12 11 41 41 H 1.09000 * 109.47062 * 298.54438 * 14 12 11 42 42 H 0.96998 * 119.99743 * 341.23259 * 17 15 12 43 43 H 0.96989 * 120.00348 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36956 * 323.01018 * 26 10 8 45 45 H 1.09001 * 110.36709 * 85.22211 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0003 6 8 4.6501 2.7030 0.0001 7 6 5.8216 3.5212 -0.0002 8 6 5.4198 4.9737 0.0009 9 8 4.2458 5.2781 0.0023 10 7 6.3651 5.9344 0.0003 11 6 6.1145 7.3831 0.0007 12 6 7.4865 8.0889 0.0299 13 1 7.7985 8.3675 -0.9766 14 6 7.4454 9.3148 0.9444 15 6 8.4246 6.9954 0.6125 16 1 8.3681 6.9743 1.7009 17 7 9.8053 7.1936 0.1643 18 6 10.8370 6.6013 0.8424 19 1 10.6329 5.9884 1.7079 20 6 12.1452 6.7895 0.4180 21 7 12.3939 7.5368 -0.6365 22 14 13.5525 5.9809 1.3426 23 1 13.8200 4.6401 0.7631 24 1 14.7703 6.8228 1.2254 25 1 13.1862 5.8371 2.7745 26 6 7.8216 5.7066 -0.0004 27 7 3.4764 -0.7565 -0.0065 28 8 2.3095 -1.0737 -0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 2.0345 2.1270 -0.0004 33 1 5.4944 1.0412 -0.8906 34 1 5.4947 1.0401 0.8893 35 1 6.4133 3.3083 -0.8905 36 1 6.4141 3.3078 0.8895 37 1 5.5714 7.6656 -0.9012 38 1 5.5368 7.6591 0.8828 39 1 7.1623 9.0076 1.9512 40 1 8.4298 9.7820 0.9703 41 1 6.7146 10.0280 0.5632 42 1 9.9885 7.7444 -0.6128 43 1 13.3079 7.6680 -0.9333 44 1 8.0706 4.8416 0.6144 45 1 8.1828 5.5637 -1.0189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214935881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:13 Heat of formation + Delta-G solvation = -1.941234 kcal Electronic energy + Delta-G solvation = -26665.968717 eV Core-core repulsion = 22687.656946 eV Total energy + Delta-G solvation = -3978.311772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.15409 -39.99689 -38.36040 -37.23509 -34.46619 -34.15045 -33.59674 -32.64001 -30.81974 -29.25795 -28.05323 -27.60405 -27.16793 -25.37179 -24.02639 -23.12737 -21.65051 -20.63227 -20.00019 -19.20047 -17.94904 -17.70675 -17.26348 -16.95240 -16.64335 -16.39498 -15.65902 -15.43091 -14.78025 -14.62100 -14.17671 -13.90043 -13.80561 -13.61235 -13.51741 -13.19096 -13.10987 -13.04655 -12.80145 -12.63609 -12.40783 -12.09040 -11.89719 -11.71985 -11.40001 -11.17456 -11.07063 -10.80897 -10.67388 -10.57080 -10.31687 -10.00670 -9.87209 -9.86180 -9.68594 -9.52652 -9.09049 -8.44174 -7.16717 -5.92352 -3.23627 1.21609 1.99265 2.53084 2.69253 2.87214 3.34069 3.39856 3.41630 3.47224 4.13494 4.35235 4.46422 4.59538 4.77323 4.85707 4.94463 4.97762 5.00304 5.03345 5.05674 5.10198 5.10848 5.16950 5.18282 5.43324 5.46720 5.54526 5.56933 5.67515 5.76589 5.85226 5.87610 5.94230 6.12987 6.17048 6.25633 6.38783 6.40625 6.53262 6.73828 6.79115 7.55823 7.66131 8.00621 8.23927 8.27140 9.37168 9.90225 10.25143 11.29371 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.002361 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.268017 B =11854.401557 C =13403.792820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.204 4.204 4 C 0.020 3.980 5 C 0.142 3.858 6 O -0.358 6.358 7 C 0.051 3.949 8 C 0.529 3.471 9 O -0.534 6.534 10 N -0.612 5.612 11 C 0.119 3.881 12 C -0.113 4.113 13 H 0.085 0.915 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.066 0.934 17 N -0.710 5.710 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.928 5.928 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.068 3.932 27 N -0.362 5.362 28 O 0.100 5.900 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.178 0.822 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.745 -9.586 0.835 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.225 4.225 4 C -0.138 4.138 5 C 0.065 3.935 6 O -0.276 6.276 7 C -0.029 4.029 8 C 0.316 3.684 9 O -0.411 6.411 10 N -0.347 5.347 11 C -0.003 4.003 12 C -0.133 4.133 13 H 0.104 0.896 14 C -0.192 4.192 15 C 0.065 3.935 16 H 0.084 0.916 17 N -0.350 5.350 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.575 5.575 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.058 4.058 27 N -0.067 5.067 28 O 0.032 5.968 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.195 0.805 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.598 -10.492 0.943 22.250 hybrid contribution 1.027 0.322 0.109 1.082 sum -18.571 -10.171 1.052 21.200 Atomic orbital electron populations 1.20330 0.83853 1.04658 1.04126 1.24551 0.96463 0.85986 1.03478 1.22456 0.90669 1.01481 1.07939 1.23124 0.97173 0.90095 1.03451 1.20325 0.90371 0.80546 1.02288 1.87908 1.29441 1.14568 1.95641 1.22204 0.88138 0.89258 1.03295 1.19691 0.85150 0.86300 0.77220 1.90693 1.17489 1.83110 1.49795 1.48425 1.07583 1.06304 1.72422 1.21972 0.97561 0.79174 1.01641 1.22524 0.93763 0.96021 1.00970 0.89650 1.21657 1.02343 0.96534 0.98625 1.21414 0.85389 0.89728 0.96967 0.91602 1.42297 0.98786 1.59117 1.34820 1.19215 0.85890 1.24387 1.08578 0.90984 1.24769 0.97429 1.00121 0.98079 1.69650 1.19598 1.42200 1.26060 0.86195 0.82151 0.78661 0.79165 1.21591 1.21685 1.20651 1.23615 0.77364 1.02692 1.02137 1.73785 0.97327 1.15312 1.20287 1.84803 1.11043 1.33182 1.67737 0.89411 0.89891 0.88904 0.80473 0.90548 0.90521 0.89741 0.89728 0.91876 0.91520 0.92795 0.91376 0.93117 0.77797 0.93280 0.91234 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.38 7.49 -35.30 -0.26 -0.65 16 3 C -0.20 -2.27 10.45 -39.39 -0.41 -2.68 16 4 C 0.02 0.24 7.28 -82.10 -0.60 -0.36 16 5 C 0.14 1.57 6.56 36.01 0.24 1.81 16 6 O -0.36 -4.78 9.37 -55.14 -0.52 -5.30 16 7 C 0.05 0.63 5.42 36.01 0.20 0.82 16 8 C 0.53 8.30 7.93 -10.98 -0.09 8.21 16 9 O -0.53 -10.12 16.83 -14.35 -0.24 -10.36 16 10 N -0.61 -9.24 3.33 -170.50 -0.57 -9.81 16 11 C 0.12 1.71 6.46 -3.07 -0.02 1.69 16 12 C -0.11 -1.67 3.19 -88.65 -0.28 -1.96 16 13 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 14 C -0.13 -1.80 9.14 37.15 0.34 -1.47 16 15 C 0.18 3.11 3.14 -65.63 -0.21 2.91 16 16 H 0.07 1.19 8.03 -51.93 -0.42 0.78 16 17 N -0.71 -15.85 5.28 -51.20 -0.27 -16.12 16 18 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 19 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.24 13.06 55.49 0.72 -25.52 16 22 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.07 1.06 6.39 -2.51 -0.02 1.05 16 27 N -0.36 -4.63 12.07 33.42 0.40 -4.22 16 28 O 0.10 1.12 11.20 17.17 0.19 1.31 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.18 1.94 8.05 -52.48 -0.42 1.51 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 39 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.39 9.29 7.72 -40.82 -0.31 8.98 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.07 1.02 7.48 -51.93 -0.39 0.64 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -31.80 382.00 -7.49 -39.29 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.97 Total: 6.25 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.98 Total: 2.66 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.29 Total: -55.67 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.57 Total: -14.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.80 -7.49 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214935881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.351 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds