Wall clock time and date at job start Tue Mar 31 2020 14:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 126.78127 * 2 1 4 4 C 1.41372 * 103.98888 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.80161 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47184 * 359.97438 * 5 4 3 7 7 C 1.42902 * 113.99806 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46861 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99990 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00100 * 180.02562 * 8 7 6 11 11 C 1.47018 * 125.64981 * 179.97438 * 10 8 7 12 12 C 1.54325 * 107.40412 * 178.82520 * 11 10 8 13 13 H 1.09000 * 110.72188 * 96.24097 * 12 11 10 14 14 C 1.52995 * 110.72304 * 219.52316 * 12 11 10 15 15 C 1.55405 * 102.82616 * 337.97548 * 12 11 10 16 16 H 1.09000 * 110.89538 * 277.26533 * 15 12 11 17 17 N 1.46505 * 111.03913 * 153.47072 * 15 12 11 18 18 C 1.36935 * 120.00217 * 161.23025 * 17 15 12 19 19 H 1.08006 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00356 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47566 * 89.99661 * 22 20 18 24 24 H 1.48503 * 109.47218 * 210.00283 * 22 20 18 25 25 H 1.48502 * 109.47082 * 329.99719 * 22 20 18 26 26 C 1.47426 * 125.64500 * 359.95253 * 10 8 7 27 27 N 1.30176 * 106.39927 * 0.25811 * 4 3 2 28 28 O 1.20925 * 111.59801 * 359.54003 * 27 4 3 29 29 H 1.08999 * 109.46629 * 89.99968 * 1 2 3 30 30 H 1.08997 * 109.47112 * 210.00464 * 1 2 3 31 31 H 1.09003 * 109.46791 * 330.00428 * 1 2 3 32 32 H 1.08007 * 128.00044 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46937 * 239.99871 * 5 4 3 34 34 H 1.08996 * 109.47604 * 119.99708 * 5 4 3 35 35 H 1.08996 * 109.47181 * 60.00501 * 7 6 5 36 36 H 1.09002 * 109.47258 * 300.00266 * 7 6 5 37 37 H 1.09002 * 109.88241 * 298.32048 * 11 10 8 38 38 H 1.09000 * 109.88049 * 59.33177 * 11 10 8 39 39 H 1.08999 * 109.47083 * 58.54334 * 14 12 11 40 40 H 1.09002 * 109.47293 * 178.54343 * 14 12 11 41 41 H 1.09000 * 109.47062 * 298.54438 * 14 12 11 42 42 H 0.96998 * 119.99743 * 341.23259 * 17 15 12 43 43 H 0.96989 * 120.00348 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36956 * 323.01018 * 26 10 8 45 45 H 1.09001 * 110.36709 * 85.22211 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0003 6 8 4.6501 2.7030 0.0001 7 6 5.8216 3.5212 -0.0002 8 6 5.4198 4.9737 0.0009 9 8 4.2458 5.2781 0.0023 10 7 6.3651 5.9344 0.0003 11 6 6.1145 7.3831 0.0007 12 6 7.4865 8.0889 0.0299 13 1 7.7985 8.3675 -0.9766 14 6 7.4454 9.3148 0.9444 15 6 8.4246 6.9954 0.6125 16 1 8.3681 6.9743 1.7009 17 7 9.8053 7.1936 0.1643 18 6 10.8370 6.6013 0.8424 19 1 10.6329 5.9884 1.7079 20 6 12.1452 6.7895 0.4180 21 7 12.3939 7.5368 -0.6365 22 14 13.5525 5.9809 1.3426 23 1 13.8200 4.6401 0.7631 24 1 14.7703 6.8228 1.2254 25 1 13.1862 5.8371 2.7745 26 6 7.8216 5.7066 -0.0004 27 7 3.4764 -0.7565 -0.0065 28 8 2.3095 -1.0737 -0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 2.0345 2.1270 -0.0004 33 1 5.4944 1.0412 -0.8906 34 1 5.4947 1.0401 0.8893 35 1 6.4133 3.3083 -0.8905 36 1 6.4141 3.3078 0.8895 37 1 5.5714 7.6656 -0.9012 38 1 5.5368 7.6591 0.8828 39 1 7.1623 9.0076 1.9512 40 1 8.4298 9.7820 0.9703 41 1 6.7146 10.0280 0.5632 42 1 9.9885 7.7444 -0.6128 43 1 13.3079 7.6680 -0.9333 44 1 8.0706 4.8416 0.6144 45 1 8.1828 5.5637 -1.0189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214935881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:12 Heat of formation + Delta-G solvation = -21.615704 kcal Electronic energy + Delta-G solvation = -26666.821866 eV Core-core repulsion = 22687.656946 eV Total energy + Delta-G solvation = -3979.164921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.99609 -41.23151 -39.45812 -38.45637 -35.85617 -35.30547 -34.29959 -34.00668 -32.52482 -30.25918 -29.11621 -28.63854 -28.13486 -26.46760 -25.79872 -23.98000 -23.05061 -21.49153 -21.31372 -20.37802 -19.09139 -18.80266 -18.61741 -18.00337 -17.77866 -17.40538 -16.89211 -16.64509 -16.15191 -15.73000 -15.43798 -15.30497 -14.74541 -14.53617 -14.49451 -14.40980 -14.26845 -14.03687 -13.94660 -13.54777 -13.28636 -13.19224 -13.05998 -12.92581 -12.88643 -12.81501 -12.20322 -12.17835 -12.13947 -11.98579 -11.69739 -11.47521 -11.36279 -11.04359 -10.86263 -10.72221 -10.29086 -9.72759 -9.02583 -7.92714 -5.22073 0.43421 1.14761 1.48012 1.48581 1.51629 1.52959 1.60094 2.15526 2.43397 2.59263 3.23933 3.39219 3.44496 3.64460 3.76035 3.78987 3.94707 4.02255 4.08954 4.11735 4.18872 4.22612 4.27273 4.39474 4.40449 4.45766 4.48179 4.58644 4.69500 4.72648 4.88079 4.88755 4.90590 4.96581 5.08243 5.14345 5.17922 5.23313 5.34498 5.46929 5.57872 5.81986 6.28060 6.42686 7.04078 7.18956 7.36436 8.07932 8.31813 9.29948 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.002361 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.268017 B =11854.401557 C =13403.792820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.023 4.023 3 C -0.231 4.231 4 C 0.005 3.995 5 C 0.141 3.859 6 O -0.378 6.378 7 C 0.053 3.947 8 C 0.526 3.474 9 O -0.571 6.571 10 N -0.610 5.610 11 C 0.120 3.880 12 C -0.103 4.103 13 H 0.080 0.920 14 C -0.129 4.129 15 C 0.170 3.830 16 H 0.064 0.936 17 N -0.720 5.720 18 C -0.238 4.238 19 H 0.081 0.919 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.270 1.270 26 C 0.081 3.919 27 N -0.386 5.386 28 O 0.092 5.908 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.084 0.916 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 -10.590 1.592 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.253 4.253 4 C -0.153 4.153 5 C 0.064 3.936 6 O -0.297 6.297 7 C -0.026 4.026 8 C 0.315 3.685 9 O -0.450 6.450 10 N -0.344 5.344 11 C -0.002 4.002 12 C -0.122 4.122 13 H 0.098 0.902 14 C -0.187 4.187 15 C 0.059 3.941 16 H 0.082 0.918 17 N -0.359 5.359 18 C -0.370 4.370 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.796 3.204 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.195 1.195 26 C -0.045 4.045 27 N -0.093 5.093 28 O 0.027 5.973 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.192 0.808 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.968 -11.523 1.731 23.988 hybrid contribution 1.278 0.646 -0.111 1.437 sum -19.689 -10.876 1.620 22.552 Atomic orbital electron populations 1.20596 0.80564 1.06171 1.05631 1.25270 0.98027 0.84800 1.00572 1.22547 0.90858 1.01904 1.09996 1.23448 0.98169 0.90286 1.03363 1.20458 0.90202 0.79312 1.03594 1.87877 1.30198 1.15698 1.95884 1.22261 0.88123 0.86993 1.05245 1.20267 0.84533 0.87567 0.76122 1.90676 1.18932 1.83850 1.51553 1.48429 1.07224 1.06663 1.72085 1.21993 0.97119 0.78879 1.02241 1.22433 0.93172 0.95845 1.00785 0.90152 1.21619 1.01984 0.96271 0.98819 1.21578 0.83743 0.91784 0.96972 0.91782 1.42394 1.00260 1.58904 1.34348 1.19587 0.86521 1.22815 1.08039 0.90142 1.25472 0.99780 1.01644 0.99318 1.69792 1.19317 1.44490 1.27973 0.85250 0.79152 0.77393 0.78597 1.21540 1.22841 1.19454 1.23307 0.77485 1.01885 1.01807 1.73769 0.98177 1.15596 1.21764 1.84765 1.10954 1.33838 1.67758 0.87707 0.88121 0.87597 0.80775 0.89213 0.89094 0.87763 0.87537 0.91356 0.90883 0.92157 0.93218 0.90831 0.79040 0.94109 0.89813 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.45 71.24 0.74 0.22 16 2 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.23 -5.05 10.45 22.40 0.23 -4.82 16 4 C 0.01 0.12 7.28 43.58 0.32 0.44 16 5 C 0.14 2.95 6.56 71.24 0.47 3.42 16 6 O -0.38 -9.65 9.37 -129.94 -1.22 -10.87 16 7 C 0.05 1.20 5.42 71.24 0.39 1.59 16 8 C 0.53 15.70 7.93 87.66 0.69 16.39 16 9 O -0.57 -21.17 16.83 16.01 0.27 -20.91 16 10 N -0.61 -17.33 3.33 -811.74 -2.70 -20.03 16 11 C 0.12 3.25 6.46 86.73 0.56 3.81 16 12 C -0.10 -2.91 3.19 -9.52 -0.03 -2.94 16 13 H 0.08 2.39 8.00 -2.39 -0.02 2.37 16 14 C -0.13 -3.30 9.14 71.98 0.66 -2.64 16 15 C 0.17 5.74 3.14 46.48 0.15 5.89 16 16 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 17 N -0.72 -31.82 5.28 -315.91 -1.67 -33.48 16 18 C -0.24 -11.82 9.98 84.03 0.84 -10.98 16 19 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 20 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 21 N -0.97 -55.37 13.06 21.65 0.28 -55.09 16 22 Si 0.97 43.24 29.55 68.60 2.03 45.27 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.08 2.38 6.39 86.86 0.56 2.93 16 27 N -0.39 -9.70 12.07 -49.57 -0.60 -10.30 16 28 O 0.09 2.01 11.20 71.59 0.80 2.81 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.17 3.82 8.05 -2.91 -0.02 3.80 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.11 1.95 7.85 -2.39 -0.02 1.93 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.91 7.82 -2.39 -0.02 1.89 16 39 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.38 18.21 7.72 -92.71 -0.72 17.50 16 43 H 0.25 14.10 8.31 -92.72 -0.77 13.33 16 44 H 0.08 2.25 7.48 -2.39 -0.02 2.23 16 45 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.61 382.00 3.71 -64.91 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.28 Total: 27.81 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.23 Total: 9.87 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.68 Total: -118.90 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.15 Total: -28.96 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -68.61 3.71 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214935881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.294 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds