Wall clock time and date at job start Tue Mar 31 2020 13:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47378 * 2 1 4 4 C 1.34223 * 117.00198 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00267 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99865 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46870 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.47095 * 54.99988 * 7 6 4 9 9 C 1.50700 * 109.46892 * 174.99853 * 7 6 4 10 10 H 1.07998 * 120.00009 * 239.99536 * 9 7 6 11 11 C 1.37878 * 120.00001 * 60.00124 * 9 7 6 12 12 N 1.31514 * 119.99825 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00067 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47001 * 60.00025 * 13 11 9 15 15 H 1.48501 * 109.47174 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47404 * 300.00183 * 13 11 9 17 17 O 1.42903 * 109.47037 * 294.99842 * 7 6 4 18 18 C 1.42902 * 114.00129 * 150.00291 * 17 7 6 19 19 C 1.50690 * 109.47604 * 180.02562 * 18 17 7 20 20 N 1.31980 * 119.58866 * 270.02370 * 19 18 17 21 21 C 1.31944 * 121.86527 * 179.97438 * 20 19 18 22 22 C 1.37994 * 120.82068 * 359.71759 * 21 20 19 23 23 C 1.39245 * 119.09026 * 0.55368 * 22 21 20 24 24 O 1.35744 * 120.84713 * 179.73416 * 23 22 21 25 25 C 1.42903 * 116.99709 * 359.72012 * 24 23 22 26 26 C 1.37948 * 119.59074 * 89.99352 * 19 18 17 27 27 C 1.50703 * 120.45135 * 0.02562 * 26 19 18 28 28 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47520 * 300.00815 * 1 2 3 30 30 H 1.09007 * 109.46395 * 60.00248 * 1 2 3 31 31 H 1.08995 * 109.47509 * 239.99731 * 2 1 3 32 32 H 1.08998 * 109.46584 * 119.99573 * 2 1 3 33 33 H 1.09003 * 109.46821 * 59.99874 * 6 4 3 34 34 H 1.09003 * 109.46797 * 299.99392 * 6 4 3 35 35 H 0.97005 * 119.99563 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.47197 * 59.99295 * 18 17 7 37 37 H 1.09007 * 109.46750 * 300.00465 * 18 17 7 38 38 H 1.08004 * 119.59013 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.45528 * 180.31260 * 22 21 20 40 40 H 1.09002 * 109.47382 * 60.00137 * 25 24 23 41 41 H 1.09001 * 109.46938 * 300.00123 * 25 24 23 42 42 H 1.09004 * 109.46926 * 180.02562 * 25 24 23 43 43 H 1.08995 * 109.47451 * 270.01433 * 27 26 19 44 44 H 1.09000 * 109.47077 * 30.01960 * 27 26 19 45 45 H 1.09007 * 109.46792 * 150.01935 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7807 2.2493 -0.8425 9 6 6.0244 4.2444 -0.1255 10 1 6.6592 4.4924 -0.9633 11 6 5.7407 5.1969 0.8302 12 7 4.9673 4.8950 1.8501 13 14 6.4549 6.9161 0.6763 14 1 5.9921 7.5325 -0.5931 15 1 6.0019 7.7447 1.8223 16 1 7.9378 6.8380 0.6767 17 8 5.8945 2.2643 1.2204 18 6 7.1177 1.5354 1.1001 19 6 7.4911 0.9559 2.4401 20 7 8.2438 1.6576 3.2665 21 6 8.5971 1.1943 4.4504 22 6 8.1830 -0.0520 4.8743 23 6 7.3924 -0.8263 4.0292 24 8 6.9696 -2.0594 4.4078 25 6 7.3780 -2.5173 5.6984 26 6 7.0414 -0.3009 2.7879 27 6 6.1822 -1.0948 1.8378 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.5851 3.4698 0.8888 34 1 3.5845 3.4692 -0.8913 35 1 4.7680 5.5650 2.5227 36 1 7.9078 2.2050 0.7604 37 1 6.9902 0.7284 0.3784 38 1 9.2146 1.7997 5.0974 39 1 8.4715 -0.4233 5.8466 40 1 7.0061 -1.8332 6.4612 41 1 8.4665 -2.5542 5.7432 42 1 6.9734 -3.5139 5.8752 43 1 5.1320 -0.8697 2.0230 44 1 6.4351 -0.8296 0.8112 45 1 6.3582 -2.1594 1.9919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223620068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:24 Heat of formation + Delta-G solvation = -135.480087 kcal Electronic energy + Delta-G solvation = -28380.455522 eV Core-core repulsion = 24364.060320 eV Total energy + Delta-G solvation = -4016.395202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45703 -39.62855 -38.16633 -36.70731 -35.58313 -33.43013 -32.56284 -31.50430 -31.20984 -29.83599 -27.78836 -27.08160 -26.01943 -25.27507 -23.09991 -21.99277 -21.55376 -20.99864 -19.72181 -17.72526 -17.11291 -16.95353 -16.43733 -16.04514 -15.84643 -15.52769 -15.00976 -14.91752 -14.58944 -14.39381 -14.01068 -13.77070 -13.43260 -13.26797 -13.10009 -12.74594 -12.52044 -12.38097 -12.19480 -12.07487 -11.78087 -11.58095 -11.48821 -11.38274 -11.19114 -11.06155 -10.88110 -10.74611 -10.51164 -10.45503 -10.03889 -9.77934 -9.48612 -9.17356 -8.97812 -8.67783 -8.52673 -8.29638 -7.84116 -5.99940 -4.18087 1.42287 1.69455 3.16339 3.20002 3.32904 3.38942 3.40471 3.46302 4.09310 4.43090 4.72707 4.81314 5.01790 5.02325 5.08810 5.14022 5.20487 5.23947 5.31368 5.43381 5.44172 5.48871 5.56561 5.75645 5.81684 5.95168 6.01867 6.03281 6.10213 6.14896 6.20453 6.40767 6.45748 6.55426 6.61847 6.75221 6.77301 6.95852 7.03113 7.14046 7.36553 7.54836 7.86421 8.19075 8.53882 8.62951 8.70266 9.04783 9.58034 11.01932 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.005515 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.813881 B = 5075.868976 C = 7919.675682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.369 6.369 4 C 0.458 3.542 5 O -0.513 6.513 6 C -0.101 4.101 7 C 0.233 3.767 8 H 0.015 0.985 9 C -0.561 4.561 10 H 0.060 0.940 11 C 0.089 3.911 12 N -0.856 5.856 13 Si 0.890 3.110 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.275 1.275 17 O -0.351 6.351 18 C 0.121 3.879 19 C 0.181 3.819 20 N -0.480 5.480 21 C 0.124 3.876 22 C -0.267 4.267 23 C 0.154 3.846 24 O -0.310 6.310 25 C 0.027 3.973 26 C -0.148 4.148 27 C -0.092 4.092 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.153 0.847 39 H 0.132 0.868 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -12.623 3.854 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.287 6.287 4 C 0.303 3.697 5 O -0.401 6.401 6 C -0.139 4.139 7 C 0.177 3.823 8 H 0.034 0.966 9 C -0.598 4.598 10 H 0.078 0.922 11 C -0.117 4.117 12 N -0.491 5.491 13 Si 0.717 3.283 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.200 1.200 17 O -0.270 6.270 18 C 0.044 3.956 19 C 0.044 3.956 20 N -0.192 5.192 21 C -0.034 4.034 22 C -0.289 4.289 23 C 0.101 3.899 24 O -0.222 6.222 25 C -0.068 4.068 26 C -0.150 4.150 27 C -0.149 4.149 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.170 0.830 39 H 0.150 0.850 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.791 -12.197 3.835 12.810 hybrid contribution 0.405 0.002 0.623 0.743 sum -0.386 -12.195 4.459 12.990 Atomic orbital electron populations 1.21775 0.93530 1.02191 1.03260 1.22807 0.94700 0.82064 1.01869 1.86593 1.26537 1.30721 1.84854 1.24986 0.79237 0.94471 0.71016 1.90533 1.60112 1.43565 1.45877 1.21898 0.97730 0.87748 1.06532 1.19330 0.87896 0.91961 0.83090 0.96649 1.21413 1.32695 0.95795 1.09883 0.92174 1.24963 0.93876 0.98450 0.94450 1.69870 1.34628 1.33919 1.10707 0.86711 0.79937 0.84133 0.77491 1.20185 1.21228 1.20030 1.88067 1.35753 1.68346 1.34847 1.20830 0.90992 0.94654 0.89172 1.21026 0.90432 0.88395 0.95716 1.67606 1.13072 1.34868 1.03654 1.22491 0.95955 0.92204 0.92738 1.22086 1.06330 0.98674 1.01762 1.19103 0.93080 0.84431 0.93310 1.86044 1.70981 1.29928 1.35222 1.23052 1.00246 1.00341 0.83141 1.20228 1.03128 0.97232 0.94462 1.20538 0.98962 0.97583 0.97854 0.90974 0.91680 0.91773 0.91987 0.91869 0.84579 0.88819 0.92706 0.92478 0.93170 0.83002 0.85015 0.92605 0.92709 0.88307 0.90719 0.90604 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.29 37.16 0.38 -1.29 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.91 10.22 -39.24 -0.40 -7.31 16 4 C 0.46 9.75 7.84 36.01 0.28 10.03 16 5 O -0.51 -11.35 15.11 -24.05 -0.36 -11.71 16 6 C -0.10 -2.33 5.22 -27.88 -0.15 -2.48 16 7 C 0.23 5.85 1.82 -27.88 -0.05 5.79 16 8 H 0.02 0.38 7.60 -51.93 -0.39 -0.02 16 9 C -0.56 -15.02 8.90 -34.44 -0.31 -15.32 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.09 2.41 5.24 -17.82 -0.09 2.32 16 12 N -0.86 -23.87 10.93 55.43 0.61 -23.26 16 13 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 O -0.35 -9.10 8.60 -49.66 -0.43 -9.52 16 18 C 0.12 2.76 5.62 36.00 0.20 2.97 16 19 C 0.18 3.87 6.41 -82.64 -0.53 3.34 16 20 N -0.48 -10.17 10.27 -9.55 -0.10 -10.26 16 21 C 0.12 2.10 11.17 -17.59 -0.20 1.90 16 22 C -0.27 -4.01 9.11 -39.30 -0.36 -4.37 16 23 C 0.15 2.57 6.70 -38.82 -0.26 2.31 16 24 O -0.31 -4.49 9.68 -18.94 -0.18 -4.68 16 25 C 0.03 0.26 9.84 101.05 0.99 1.25 16 26 C -0.15 -2.82 5.91 -104.34 -0.62 -3.44 16 27 C -0.09 -1.64 9.42 36.01 0.34 -1.30 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.14 3.46 6.22 -51.93 -0.32 3.14 16 34 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 1.06 5.88 -51.93 -0.31 0.76 16 38 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 39 H 0.13 1.48 6.47 -52.48 -0.34 1.14 16 40 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 41 H 0.05 0.44 7.72 -51.93 -0.40 0.04 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 44 H 0.08 1.37 5.95 -51.93 -0.31 1.06 16 45 H 0.06 0.90 7.62 -51.93 -0.40 0.51 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -31.98 377.87 -6.96 -38.94 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.64 Total: 3.40 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.13 Total: 2.81 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.51 Total: -33.53 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.37 Total: -33.22 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.98 -6.96 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223620068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.539 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds